genome.fa.s2.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  171  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58403946--58403999	21	2.6	21	87	0	81	20	29	18	31	1.96
58405331--58405427	44	2.2	43	81	7	106	23	16	25	34	1.95
58405391--58405497	42	2.5	40	77	14	117	25	16	25	32	1.96
58406961--58407022	30	2.1	30	96	0	115	35	16	12	35	1.87
58409586--58409624	20	1.9	20	84	5	51	51	17	5	25	1.66
58415034--58415209	46	3.8	45	76	11	187	21	20	29	28	1.98
58415030--58415201	93	1.8	93	91	2	283	20	20	30	27	1.98
58418130--58418198	15	4.6	15	83	0	84	11	17	13	57	1.64
58418121--58418208	30	3.0	30	81	8	99	10	17	15	56	1.66
58420580--58420753	46	3.8	45	78	6	188	20	20	29	28	1.98
58425544--58425621	33	2.4	33	86	4	104	23	20	16	39	1.92
58426047--58426224	43	4.2	43	79	4	182	31	25	12	30	1.92
58429397--58429438	22	2.0	21	85	4	57	28	7	14	50	1.69
58430163--58430227	32	2.0	32	100	0	130	24	20	18	36	1.94
58437176--58437393	45	4.9	45	93	1	368	22	20	29	27	1.98
58445512--58445634	43	2.9	43	80	9	144	34	26	15	24	1.95
58446123--58446165	16	2.6	16	88	3	59	27	27	6	37	1.83
58453426--58453589	45	3.7	45	81	4	183	23	15	26	34	1.95
58456457--58456513	20	2.9	19	74	12	53	47	15	0	36	1.46
58459512--58459540	12	2.4	12	100	0	58	17	0	0	82	0.66
58461977--58462201	122	1.9	120	88	3	344	40	11	18	30	1.85
58465861--58465938	29	2.7	28	84	11	104	25	15	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58465891--58466217	173	1.9	174	93	0	566	29	14	24	31	1.94
58474024--58474101	29	2.7	28	80	11	95	25	14	30	29	1.94
58474054--58474380	173	1.9	174	94	0	575	29	14	24	31	1.94
58478689--58478714	11	2.4	11	100	0	52	53	19	0	26	1.45
58479200--58479342	27	5.3	27	80	6	80	32	11	18	38	1.86
58479215--58479580	81	4.5	80	78	7	366	30	9	21	39	1.84
58479243--58479580	27	12.6	27	79	9	300	29	9	21	39	1.84
58483710--58483876	46	3.6	46	74	13	162	31	29	18	20	1.96
58483717--58483889	93	1.9	93	88	0	265	30	29	19	20	1.97
58486436--58486582	42	3.4	41	79	10	136	32	23	17	26	1.97
58490059--58490119	30	2.0	30	83	0	77	29	24	3	42	1.70
58495950--58496030	41	2.0	41	92	0	135	22	29	14	33	1.94
58499410--58499721	48	6.5	48	82	4	382	30	18	28	23	1.97
58499407--58499721	144	2.2	143	87	4	456	29	18	28	23	1.98
58502925--58503080	48	3.2	48	81	0	159	25	17	30	25	1.97
58510268--58510634	48	7.6	48	87	2	497	28	19	29	22	1.98
58511975--58512149	49	3.5	48	81	6	224	29	25	17	26	1.98
58511967--58512163	100	2.0	101	92	2	333	29	25	18	26	1.98
58528072--58528296	49	4.5	49	86	2	288	29	27	17	25	1.98
58528070--58528296	99	2.3	100	85	2	296	29	27	17	25	1.98
58542172--58542231	29	2.1	28	84	12	77	68	0	3	28	1.05
58546300--58546397	24	4.0	24	87	1	142	34	5	37	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58552628--58552721	24	3.9	24	90	0	143	37	5	36	21	1.76
58555048--58555211	46	3.6	45	70	18	124	25	17	25	32	1.97
58555038--58555212	93	1.9	93	87	7	257	25	17	26	31	1.97
58556936--58556966	15	2.1	15	93	0	53	41	35	0	22	1.54
58561262--58561288	10	2.7	10	100	0	54	18	0	18	62	1.32
58566941--58567098	43	3.7	43	77	5	151	34	25	16	24	1.95
58569776--58569865	29	3.1	29	88	1	119	26	16	30	26	1.97
58569789--58569899	57	1.9	57	83	1	141	27	17	30	25	1.97
58578929--58578968	14	2.9	14	85	7	55	55	10	12	22	1.67
58579437--58579481	20	2.2	21	84	11	58	4	26	15	53	1.61
58586157--58586195	19	2.1	19	100	0	78	33	20	20	25	1.97
58599314--58599356	20	2.2	20	95	0	77	23	41	25	9	1.84
58601287--58601343	8	7.1	8	100	0	114	24	24	0	50	1.49
58612501--58612577	38	2.0	38	97	0	145	33	20	10	35	1.87
58627100--58627194	34	2.8	33	87	9	129	25	24	22	28	1.99
58627190--58627227	18	2.1	18	90	0	58	42	15	15	26	1.87
58627597--58627716	27	4.5	27	83	3	145	23	18	18	40	1.92
58627582--58627716	54	2.5	53	83	3	164	24	17	19	39	1.92
58627582--58627716	27	5.0	27	79	7	141	24	17	19	39	1.92
58627675--58627734	26	2.3	26	85	2	75	30	20	15	35	1.93
58628805--58628842	19	2.0	20	85	15	53	39	23	0	36	1.55
58629072--58629241	93	1.8	92	93	1	295	28	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58629067--58629238	45	3.7	46	79	11	208	29	27	20	22	1.98
58672569--58672715	42	3.5	42	75	7	136	29	25	18	26	1.98
58673082--58673106	8	3.1	8	100	0	50	24	24	0	52	1.48
58685848--58686025	27	6.6	27	84	3	205	29	28	15	26	1.96
58685869--58686024	82	1.9	81	88	3	233	29	28	15	26	1.96
58702372--58702466	34	2.8	34	86	0	127	27	26	20	26	1.99
58702841--58702990	27	5.6	27	84	2	169	24	19	17	39	1.92
58702841--58702989	81	1.9	80	84	4	201	23	19	17	39	1.92
58702949--58703008	26	2.3	26	82	8	68	30	18	15	36	1.91
58705061--58705647	293	2.0	291	96	0	1093	30	10	20	38	1.87
58706118--58706152	10	3.5	10	96	0	61	0	25	0	74	0.82
58707348--58707394	20	2.3	20	92	7	78	36	10	19	34	1.86
58707442--58707549	25	4.4	24	87	8	130	27	21	22	28	1.99
58707442--58707561	49	2.4	51	85	9	151	26	22	22	28	1.99
58707758--58707821	31	2.1	31	93	0	110	37	15	23	23	1.93
58715485--58715551	20	3.3	20	91	4	109	35	10	17	35	1.85
58715496--58715551	11	5.5	11	71	16	57	35	10	17	35	1.85
58715485--58715565	40	2.0	40	81	13	96	35	11	17	35	1.85
58715624--58715706	25	3.4	25	93	6	143	27	19	21	31	1.97
58715599--58715706	25	4.4	24	89	5	137	27	20	22	29	1.98
58715624--58715718	49	1.9	50	85	10	133	26	21	22	30	1.98
58715915--58715978	31	2.1	31	90	0	101	37	17	21	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58726860--58727009	40	3.7	40	84	3	185	36	28	14	21	1.93
58726860--58727009	80	1.9	82	87	5	225	36	28	14	21	1.93
58736223--58736274	21	2.5	21	93	0	86	21	26	38	13	1.90
58739641--58739798	68	2.3	68	79	13	162	21	27	15	35	1.94
58740197--58740262	34	1.9	34	100	0	132	30	18	19	31	1.96
58762535--58762587	25	2.1	25	82	6	63	26	26	22	24	2.00
58768563--58768619	30	1.9	29	96	3	105	19	43	0	36	1.51
58776811--58776947	46	3.0	46	86	0	184	23	29	10	35	1.89
58776921--58777159	47	5.1	47	91	1	336	25	30	11	32	1.91
58777011--58777085	22	3.3	22	68	17	71	25	30	13	30	1.94
58777125--58777193	34	2.0	34	97	0	129	31	27	5	34	1.81
58777078--58777240	81	2.0	81	95	0	290	28	28	10	33	1.90
58777031--58777287	128	2.0	128	93	0	442	26	28	11	33	1.91
58777159--58777288	47	2.8	47	96	0	233	26	26	12	35	1.91
58782110--58782181	35	2.1	35	97	0	135	27	11	22	38	1.88
58782565--58782604	21	2.0	20	85	9	55	35	7	0	57	1.27
58786236--58786287	26	2.0	26	85	10	72	48	1	0	50	1.12
58786233--58786294	26	2.5	24	78	16	65	48	1	0	50	1.10
58786308--58786351	14	3.1	14	87	9	54	61	0	0	38	0.96
58786310--58786354	22	2.2	20	88	8	63	62	0	0	37	0.96
58786308--58786364	19	2.9	19	70	29	57	57	0	0	42	0.98
58786446--58786501	15	3.5	15	71	19	51	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58789848--58789888	22	1.9	22	90	5	66	17	29	41	12	1.85
58798281--58798311	7	4.4	7	91	0	53	16	51	0	32	1.44
58809210--58809465	40	6.4	40	90	3	376	24	22	27	25	2.00
58809205--58809465	119	2.2	119	88	4	384	25	21	26	26	2.00
58815213--58815241	7	4.1	7	100	0	58	13	55	0	31	1.39
58817507--58817728	46	4.7	46	77	11	168	25	30	18	26	1.98
58826583--58826669	42	2.1	42	88	0	129	21	28	29	19	1.98
58834289--58834403	43	2.6	44	74	8	110	38	26	14	20	1.91
58837128--58837169	21	2.0	21	100	0	84	23	9	19	47	1.78
58838301--58838416	45	2.6	45	83	1	144	22	20	29	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295