genome.fa.s2.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  128  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43905414--43905507	40	2.3	40	81	3	118	31	26	15	25	1.96
43909712--43909775	32	2.0	32	96	0	119	12	14	28	45	1.81
43926932--43927016	21	4.0	22	77	9	86	35	27	22	15	1.94
43926936--43927016	44	1.9	41	82	7	99	33	28	23	14	1.94
43927209--43927271	23	2.7	23	100	0	126	44	34	4	15	1.68
43927209--43927302	23	3.9	23	84	13	116	44	34	4	17	1.68
43927985--43928018	16	2.1	16	88	0	50	29	14	5	50	1.67
43930845--43930996	76	2.0	76	97	0	286	34	13	19	33	1.90
43938927--43939059	62	2.2	58	85	6	178	40	3	4	51	1.40
43984438--43984644	53	3.8	53	74	3	180	39	16	22	21	1.92
43987446--43987561	43	2.7	43	77	4	128	34	25	16	23	1.95
43991954--43992066	47	2.4	47	85	7	142	30	23	23	22	1.99
43993260--43993300	22	1.9	22	90	5	66	9	41	29	19	1.83
44019263--44019426	43	3.8	43	77	10	165	32	23	15	27	1.95
44019263--44019411	42	3.5	43	77	11	162	30	24	16	28	1.97
44019615--44019649	16	2.2	16	100	0	70	31	11	5	51	1.61
44027844--44027925	42	2.0	42	85	4	112	24	34	21	19	1.97
44028119--44028168	23	2.3	22	80	12	59	46	26	6	22	1.74
44031185--44031228	15	2.9	15	82	0	52	6	2	36	54	1.40
44031576--44031654	39	2.0	39	97	0	149	25	18	30	25	1.98
44034600--44034639	3	13.3	3	100	0	80	67	0	0	32	0.91
44035280--44035318	7	5.4	7	81	6	51	61	2	0	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44035562--44035603	18	2.5	17	85	11	59	69	0	0	30	0.89
44035568--44035606	20	2.0	20	90	10	62	66	0	0	33	0.92
44036516--44036560	13	3.3	13	82	11	54	17	2	35	44	1.62
44036563--44036625	28	2.2	29	94	2	110	36	0	22	41	1.54
44036795--44036836	14	3.0	14	76	13	50	54	4	9	30	1.53
44050391--44050519	23	5.3	23	75	10	91	34	18	20	25	1.96
44050792--44050833	20	2.1	20	86	0	57	40	11	7	40	1.69
44051961--44052011	9	5.7	9	77	6	50	60	1	1	35	1.19
44055957--44056001	17	2.6	17	96	0	81	62	6	26	4	1.39
44065496--44065540	23	2.0	23	82	8	56	44	2	4	48	1.35
44066822--44066946	61	2.0	63	87	3	182	30	4	8	56	1.51
44067441--44067485	3	15.0	3	100	0	90	0	33	0	66	0.92
44073863--44073937	28	2.6	28	80	16	75	62	2	4	30	1.27
44074383--44074421	16	2.4	16	87	8	53	66	0	7	25	1.18
44075783--44076008	44	5.1	46	70	9	121	28	23	18	29	1.98
44075703--44076040	177	1.9	176	84	3	455	28	23	19	28	1.98
44080787--44080830	21	2.1	21	91	0	70	47	6	15	29	1.72
44088222--44088303	24	3.2	24	76	13	76	59	4	3	31	1.36
44088707--44088745	16	2.4	16	87	8	53	66	0	7	25	1.18
44096170--44096224	19	2.8	19	67	22	51	36	0	3	60	1.15
44097974--44098017	22	1.9	23	86	9	63	25	20	0	54	1.45
44103843--44103901	26	2.3	25	85	8	82	40	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44103856--44103911	15	4.0	15	73	17	57	44	0	0	55	0.99
44103882--44103950	22	3.3	22	69	22	67	43	2	0	53	1.15
44103828--44103968	17	8.6	17	67	22	61	45	1	0	52	1.14
44104196--44104263	16	4.2	16	92	0	118	35	36	0	27	1.58
44104939--44104976	18	2.1	18	90	0	58	42	44	2	10	1.52
44104953--44104977	13	1.9	13	100	0	50	40	48	0	12	1.40
44105002--44105042	6	6.5	6	83	10	55	78	2	0	19	0.87
44105002--44105046	20	2.2	20	88	0	63	77	2	0	20	0.87
44105061--44105101	9	4.6	9	87	0	55	29	7	19	43	1.78
44106695--44106901	57	3.6	57	79	5	213	32	22	16	28	1.95
44116727--44116877	29	5.2	29	84	0	212	22	25	15	37	1.93
44121151--44123967	94	30.0	94	82	1	2684	28	19	17	34	1.95
44121397--44121645	44	5.4	44	66	24	111	27	18	18	34	1.95
44121685--44121830	44	3.2	44	70	21	118	29	22	15	32	1.94
44122131--44122393	44	5.7	44	65	17	131	27	18	16	38	1.92
44122115--44122351	44	5.0	48	65	19	156	29	18	16	36	1.92
44123179--44123345	44	3.7	43	72	17	131	31	18	17	32	1.95
44123137--44123301	50	3.4	48	71	18	139	34	18	16	30	1.93
44129512--44129537	11	2.4	11	100	0	52	73	0	7	19	1.07
44129709--44129737	8	3.8	8	90	9	51	86	0	0	13	0.58
44129709--44129737	15	1.9	15	100	0	58	86	0	0	13	0.58
44130605--44130653	20	2.4	21	80	16	59	8	10	10	71	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44142955--44143009	26	2.1	27	93	3	94	52	10	9	27	1.66
44142998--44143024	13	2.1	13	100	0	54	70	0	14	14	1.17
44143515--44143541	7	3.9	7	100	0	54	88	0	0	11	0.50
44145654--44145715	28	2.2	28	97	0	115	29	8	9	53	1.62
44145664--44145721	28	2.1	27	87	6	82	31	8	10	50	1.67
44151231--44151366	40	3.4	40	90	3	204	24	20	29	25	1.99
44156336--44156513	27	6.6	27	83	3	205	26	15	28	29	1.96
44156337--44156492	82	1.9	81	88	3	233	26	15	28	29	1.96
44156333--44156513	82	2.2	81	83	2	229	27	15	27	29	1.96
44164525--44164700	27	6.6	27	83	6	196	26	15	28	29	1.96
44164525--44164675	55	2.8	54	82	5	182	27	15	28	28	1.96
44170719--44170855	40	3.5	39	89	5	195	24	21	29	24	1.99
44178193--44178957	242	3.1	245	78	12	825	44	7	9	38	1.66
44178498--44178558	27	2.3	24	78	15	59	39	4	6	49	1.50
44177987--44179120	244	4.7	242	79	12	953	44	7	9	37	1.66
44179458--44179511	27	2.0	27	82	7	65	25	1	25	46	1.63
44180599--44180686	44	2.0	44	100	0	176	36	18	13	31	1.90
44181356--44181411	21	2.7	21	82	0	76	26	10	35	26	1.89
44183529--44183574	20	2.3	20	82	14	60	28	28	17	26	1.98
44185076--44185438	180	2.0	180	97	0	681	34	20	19	25	1.96
44189735--44189862	32	4.0	32	93	0	229	45	9	10	34	1.72
44190583--44190616	7	4.9	7	100	0	68	41	0	14	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44192107--44192155	24	2.1	22	88	7	71	20	0	6	73	1.04
44193384--44193441	28	2.1	28	100	0	116	24	6	22	46	1.76
44195214--44195348	42	3.2	41	76	6	128	24	12	20	42	1.87
44195293--44195399	43	2.5	43	87	0	151	19	14	25	41	1.89
44195383--44195480	43	2.3	43	82	7	119	21	16	20	41	1.90
44199066--44199103	11	3.2	12	85	14	53	52	0	0	47	1.00
44206290--44206339	18	2.7	18	81	6	55	20	26	38	16	1.92
44211716--44211766	9	5.4	9	77	15	50	62	3	1	31	1.24
44214816--44214864	13	3.8	12	80	19	55	81	0	18	0	0.69
44214814--44214863	6	8.2	6	77	18	50	80	0	20	0	0.72
44214817--44214864	25	2.0	24	88	12	71	81	0	18	0	0.70
44221124--44221155	16	2.0	16	100	0	64	31	6	18	43	1.75
44230280--44230312	17	1.9	17	93	0	57	21	12	21	45	1.84
44242209--44242272	31	2.1	31	87	0	92	26	23	14	35	1.93
44242465--44242632	24	7.0	24	87	7	234	29	20	19	30	1.97
44242689--44242765	9	7.9	9	72	16	64	35	20	9	35	1.85
44242677--44242767	20	4.6	20	95	0	164	32	20	10	35	1.88
44242682--44242756	11	7.4	11	71	17	72	32	20	12	36	1.89
44250348--44250411	31	2.1	31	90	0	101	25	23	15	35	1.94
44250600--44250719	24	5.0	24	87	8	163	26	20	20	32	1.97
44250600--44250719	49	2.5	48	87	6	163	26	20	20	32	1.97
44250776--44250852	9	7.9	9	72	16	64	35	20	9	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44250772--44250854	20	4.2	20	96	0	157	32	19	12	36	1.88
44250772--44250843	11	7.1	11	70	17	66	31	19	12	36	1.89
44250891--44250938	25	1.9	25	91	0	78	25	14	25	35	1.94
44260462--44260628	46	3.6	45	84	8	176	25	29	17	28	1.97
44263687--44263805	41	2.8	43	78	12	122	27	17	23	31	1.97
44268893--44269120	81	2.8	82	82	4	241	33	19	20	26	1.96
44268910--44269077	41	4.1	41	85	4	216	35	19	19	25	1.95
44269396--44269445	21	2.3	22	77	16	59	46	26	0	28	1.53
44269875--44269983	7	15.7	7	71	9	62	19	0	32	47	1.56
44269926--44269982	21	2.7	21	86	5	80	15	1	35	47	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295