genome.fa.s2.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  119  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40904886--40904928	21	2.0	21	82	13	52	16	13	6	62	1.51
40912880--40913135	46	5.5	47	75	13	187	24	28	16	29	1.97
40914902--40914933	16	2.0	16	100	0	64	31	12	12	43	1.80
40915199--40915233	18	1.9	18	88	0	52	42	20	0	37	1.52
40918986--40919034	21	2.3	21	85	0	62	24	24	14	36	1.93
40920220--40920289	35	1.9	38	83	13	94	38	17	12	31	1.87
40923662--40923717	9	6.2	9	71	8	51	21	3	3	71	1.17
40923783--40923818	12	2.8	12	91	8	54	41	0	0	58	0.98
40923797--40923856	20	3.0	20	85	7	79	36	0	0	63	0.95
40923775--40924095	156	2.1	155	81	9	368	37	1	3	57	1.26
40923938--40924025	29	3.1	28	81	4	104	31	0	4	63	1.14
40923932--40924020	20	4.8	18	76	12	74	30	0	4	65	1.13
40923986--40924020	18	2.0	17	88	5	52	28	0	0	71	0.86
40924087--40924136	22	2.4	21	84	15	68	44	0	0	56	0.99
40926216--40926251	2	18.5	2	94	5	65	50	50	0	0	1.00
40927078--40927199	41	2.9	42	79	4	129	31	25	17	26	1.97
40927077--40927210	43	3.2	42	77	5	119	32	26	16	25	1.96
40927790--40927819	15	2.0	15	93	0	51	56	23	0	20	1.42
40933574--40933617	19	2.3	19	88	4	61	47	9	2	40	1.48
40933672--40933717	19	2.5	18	85	3	56	52	0	4	43	1.21
40933846--40933910	20	3.2	20	74	22	55	55	0	1	43	1.09
40933851--40933915	21	3.0	22	77	18	75	60	1	1	36	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40933854--40933908	22	2.7	20	83	13	67	61	0	1	36	1.06
40933906--40933953	22	2.2	22	82	10	55	56	4	0	39	1.19
40933857--40933970	56	2.1	55	83	8	142	58	3	0	36	1.21
40933986--40934056	4	16.5	4	72	18	54	71	4	5	18	1.22
40933976--40934058	23	3.7	23	73	12	73	69	4	6	19	1.27
40934769--40934814	24	1.9	24	91	8	76	32	0	2	65	1.05
40934769--40934821	24	2.2	24	86	10	72	37	0	3	58	1.16
40936241--40936292	24	2.2	24	89	0	77	55	9	1	32	1.43
40938210--40938261	24	2.2	24	89	0	77	55	9	1	32	1.43
40942437--40942468	15	2.1	15	100	0	64	28	6	46	18	1.73
40944676--40944845	48	3.6	47	82	1	187	29	16	27	27	1.97
40944850--40944930	42	1.9	42	87	0	117	28	20	25	24	1.99
40949686--40949762	39	2.0	40	82	7	95	59	7	5	27	1.46
40949792--40949834	22	2.0	21	81	4	50	44	0	32	23	1.54
40949886--40949915	15	2.0	15	100	0	60	66	0	6	26	1.16
40954911--40954989	32	2.5	32	89	0	113	29	3	16	50	1.62
40956009--40956059	21	2.5	22	75	12	54	50	3	3	41	1.39
40971793--40971828	18	2.1	18	89	5	56	63	8	0	27	1.23
40976921--40976950	3	10.0	3	92	0	51	63	0	3	33	1.11
40981665--40981797	62	2.1	62	95	0	239	39	15	19	24	1.91
40982062--40982178	58	2.0	58	100	0	234	50	3	8	37	1.50
40989857--40989906	25	2.0	25	100	0	100	24	24	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40996329--40996362	18	1.9	18	88	5	52	29	17	11	41	1.85
41004941--41005016	27	2.8	28	89	4	127	27	32	13	26	1.93
41005056--41005089	18	1.9	18	88	5	52	17	38	23	20	1.93
41005502--41005541	21	1.9	21	84	0	53	35	25	10	30	1.88
41019772--41019803	16	2.0	16	93	0	55	34	18	0	46	1.49
41020012--41020340	50	6.6	49	73	10	238	31	25	17	26	1.97
41020064--41020341	101	2.8	101	87	3	357	31	25	17	26	1.97
41020006--41020290	151	1.9	151	86	5	407	30	24	18	27	1.98
41020127--41020345	100	2.2	101	91	0	359	31	24	17	26	1.97
41020961--41021019	30	2.0	30	82	0	73	25	27	6	40	1.80
41026437--41026479	18	2.4	18	92	3	70	44	0	20	34	1.52
41032090--41032558	250	1.9	250	83	3	613	24	19	18	37	1.94
41032920--41032955	18	2.0	19	89	10	58	50	0	13	36	1.43
41035679--41035819	31	4.5	31	88	1	194	27	24	16	31	1.96
41036022--41036091	25	2.8	25	91	0	113	27	22	24	25	2.00
41036139--41036207	11	6.7	11	77	14	76	33	18	11	36	1.87
41036139--41036195	20	2.8	20	100	0	114	33	19	10	36	1.86
41042710--41042894	79	2.3	81	82	7	218	25	27	22	25	2.00
41042691--41042894	40	5.1	40	78	11	197	25	26	22	25	2.00
41048855--41048906	27	2.0	26	84	3	68	34	21	26	17	1.95
41050620--41050663	22	2.0	22	95	0	79	25	36	4	34	1.76
41051280--41051421	27	5.3	27	82	5	162	24	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41051284--41051425	54	2.6	54	87	1	205	24	21	16	37	1.94
41053153--41053195	18	2.4	18	92	3	70	46	0	18	34	1.50
41059225--41059301	39	2.0	39	92	0	127	35	19	5	40	1.74
41070940--41070970	16	1.9	16	100	0	62	51	25	6	16	1.68
41072458--41072517	28	2.1	28	81	3	66	26	16	30	26	1.97
41075878--41075930	25	2.1	25	92	0	88	41	16	11	30	1.84
41082331--41082548	54	4.0	54	81	4	215	22	22	14	39	1.91
41082354--41082548	55	3.6	55	82	4	209	23	23	15	37	1.93
41082527--41082648	47	2.6	47	89	0	181	26	22	13	36	1.92
41088731--41088928	51	3.9	51	91	0	324	32	11	24	30	1.91
41094979--41095122	28	5.4	27	80	12	156	33	13	25	27	1.94
41094980--41095122	52	2.7	55	85	8	174	33	13	25	26	1.94
41095146--41095343	51	3.9	51	88	1	281	32	10	25	31	1.90
41098113--41098235	46	2.7	44	79	9	140	27	17	28	26	1.97
41098208--41098429	49	4.7	49	75	8	199	28	19	25	26	1.99
41106458--41106526	27	2.5	28	88	2	104	28	33	11	26	1.91
41112007--41112077	13	5.4	13	72	3	52	42	4	19	33	1.71
41112005--41112077	27	2.8	26	72	4	74	42	4	19	34	1.70
41113418--41113702	134	2.1	134	83	3	351	27	24	15	32	1.95
41113422--41113702	67	4.2	67	78	4	298	27	24	14	33	1.95
41123359--41123432	30	2.5	29	79	14	80	40	13	5	40	1.67
41123774--41123910	66	2.1	66	84	0	175	24	24	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41127100--41127131	15	2.1	15	100	0	64	31	18	18	31	1.95
41127611--41127662	3	17.3	3	100	0	104	32	0	0	67	0.91
41133630--41133838	55	3.9	53	78	7	215	34	15	25	23	1.95
41133638--41133838	108	1.8	110	86	4	291	34	16	25	23	1.95
41138631--41138885	126	2.0	126	97	0	483	30	15	24	30	1.95
41140878--41141093	55	4.0	54	80	7	242	35	16	25	22	1.95
41140886--41141085	108	1.8	110	88	4	307	34	17	26	22	1.96
41147499--41147559	25	2.4	25	91	0	95	29	22	24	22	1.99
41151253--41151346	40	2.3	41	85	7	122	25	15	29	28	1.96
41159869--41159916	19	2.5	19	93	0	78	50	18	20	10	1.76
41159906--41159949	21	2.1	21	91	0	70	47	11	18	22	1.80
41160784--41160923	70	2.0	70	95	0	253	38	22	15	24	1.92
41163045--41163156	4	28.0	4	94	0	152	42	0	50	6	1.27
41163045--41163156	6	18.7	6	84	0	152	42	0	50	6	1.27
41163156--41163186	2	15.5	2	100	0	62	0	0	51	48	1.00
41165812--41166122	47	6.6	48	75	12	220	23	28	19	27	1.98
41165954--41166122	46	3.6	46	82	6	216	22	30	19	27	1.98
41169104--41169202	28	3.5	28	87	4	119	27	15	27	30	1.96
41176376--41176407	16	2.0	16	100	0	64	43	31	12	12	1.80
41177337--41177447	55	2.0	55	94	0	195	21	20	19	37	1.94
41179526--41179562	17	2.1	17	90	10	56	67	5	2	24	1.25
41179566--41179599	14	2.4	14	90	0	50	67	5	2	23	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41182986--41183015	11	2.6	11	94	5	51	36	0	6	56	1.26
41185683--41185725	22	2.0	22	90	0	68	62	6	9	20	1.48
41193378--41193426	25	1.9	26	84	12	66	71	0	6	22	1.08
41193485--41193521	16	2.2	17	86	13	51	67	0	29	2	1.04
41195864--41196085	46	4.8	46	84	9	299	21	20	28	29	1.98
41195910--41196078	93	1.8	93	94	0	302	21	21	28	28	1.98
41203479--41203653	45	3.8	46	79	13	207	21	20	29	29	1.98
41203476--41203645	46	3.7	47	79	15	194	21	21	28	28	1.99
41205549--41205582	17	2.0	17	94	0	59	26	35	26	11	1.91
41211281--41211328	21	2.3	20	80	13	53	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295