genome.fa.s2.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  178  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61133973--61134205	47	4.8	49	79	4	172	28	18	28	24	1.98
61134077--61134202	47	2.7	47	85	2	173	28	19	25	26	1.99
61143737--61143796	27	2.3	26	85	2	75	20	23	21	35	1.96
61151543--61151664	47	2.6	47	82	5	138	27	16	27	28	1.97
61161073--61161256	101	1.8	99	84	2	251	29	26	17	26	1.98
61164068--61164117	15	3.3	15	86	8	66	56	18	12	14	1.68
61166849--61166974	50	2.6	49	89	3	182	30	26	15	27	1.96
61166849--61167032	101	1.8	99	84	2	251	29	25	17	27	1.98
61172267--61172308	22	1.9	22	95	0	75	38	0	14	47	1.44
61176972--61177042	25	2.8	24	89	4	97	28	25	21	25	1.99
61177098--61177150	11	5.0	11	81	6	65	32	16	13	37	1.88
61177090--61177148	31	1.9	32	86	6	86	35	16	10	37	1.83
61177090--61177138	21	2.3	21	96	0	89	36	18	10	34	1.85
61178310--61178334	13	1.9	13	100	0	50	84	0	16	0	0.63
61179648--61179717	32	2.2	32	89	0	104	15	24	35	24	1.94
61187994--61188218	40	5.6	40	83	2	272	25	24	26	23	2.00
61187994--61188254	120	2.2	120	83	6	325	26	23	26	24	2.00
61192275--61192352	27	2.9	28	75	7	72	37	26	6	29	1.81
61192344--61192530	27	6.9	27	88	0	239	33	16	21	28	1.95
61192336--61192530	81	2.4	81	86	0	273	34	16	20	28	1.95
61192736--61192801	25	2.6	25	92	0	114	27	28	21	22	1.99
61196147--61196199	26	2.0	26	100	0	106	47	22	7	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61200701--61200742	21	2.0	21	86	4	59	28	19	7	45	1.76
61201834--61201924	25	3.6	25	94	2	157	23	23	27	26	2.00
61202131--61202300	27	6.3	26	82	9	173	28	21	14	35	1.93
61202130--61202300	54	3.2	53	89	3	243	28	21	15	35	1.93
61202283--61202717	27	16.1	27	78	7	240	31	9	19	39	1.84
61202309--61202704	81	4.9	81	79	1	409	31	9	19	39	1.84
61202309--61202703	54	7.3	54	76	2	346	31	9	19	39	1.84
61202640--61202960	81	4.0	81	82	1	277	37	6	22	33	1.80
61202696--61202987	27	10.8	27	83	1	325	39	6	22	31	1.81
61202309--61202730	161	2.6	161	81	2	418	31	9	20	39	1.83
61202696--61202987	81	3.6	81	82	3	363	39	6	22	31	1.81
61203809--61203903	25	3.8	25	95	0	163	26	23	25	25	2.00
61204107--61204277	27	6.3	27	83	1	191	27	19	17	35	1.94
61204108--61204277	54	3.2	53	87	3	241	27	19	17	35	1.94
61204206--61204710	27	18.7	26	74	9	253	30	10	19	38	1.86
61204206--61204724	54	9.6	54	75	5	368	31	10	20	38	1.87
61204314--61204710	81	4.9	80	78	4	359	31	10	19	38	1.85
61204297--61204724	27	15.8	27	79	3	324	31	10	19	38	1.85
61204675--61204913	27	8.9	27	86	0	271	37	9	23	29	1.86
61204703--61204913	27	7.8	27	87	0	278	38	9	24	27	1.86
61204703--61204913	81	2.6	81	87	0	323	38	9	24	27	1.86
61206053--61206082	4	7.2	4	92	7	51	26	23	0	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61217929--61218184	128	2.0	128	97	0	485	35	22	19	22	1.96
61245424--61245643	40	5.6	40	88	3	304	26	23	27	22	2.00
61245424--61245643	79	2.8	80	85	4	304	26	23	27	22	2.00
61252555--61252646	42	2.2	42	92	0	148	34	21	14	29	1.93
61252779--61252912	25	5.3	26	85	7	181	26	23	21	28	1.99
61252779--61252912	50	2.7	51	92	7	215	26	23	21	28	1.99
61252961--61253067	20	5.3	20	93	2	171	30	17	11	40	1.85
61252978--61253056	11	7.7	11	64	16	53	30	18	10	40	1.84
61252978--61253074	9	9.8	10	66	16	51	31	18	9	40	1.82
61253421--61253459	20	1.9	21	94	5	71	23	33	20	23	1.97
61253774--61253867	27	3.5	26	85	9	118	21	24	20	34	1.97
61253774--61253857	27	3.1	27	89	3	125	21	25	22	30	1.98
61253897--61254242	27	12.8	27	73	7	245	31	8	19	39	1.83
61254007--61254242	81	2.9	81	89	1	323	30	8	20	40	1.81
61254233--61254363	27	4.9	27	87	0	172	41	8	19	29	1.81
61254209--61254363	54	2.9	54	82	0	157	40	8	19	31	1.81
61265772--61265845	29	2.6	29	89	4	105	25	16	32	25	1.96
61274133--61274206	29	2.6	29	89	4	105	25	16	32	25	1.96
61281785--61281827	22	2.0	22	85	0	59	16	27	25	30	1.97
61287294--61287345	20	2.6	20	90	0	77	25	30	26	17	1.97
61303452--61303584	65	2.0	65	98	0	257	27	29	21	21	1.98
61304707--61304745	17	2.3	17	81	0	51	15	7	2	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61310283--61310335	20	2.7	20	100	0	106	18	33	32	15	1.92
61310730--61310793	18	3.6	18	80	0	74	42	12	20	25	1.87
61310816--61310858	22	1.9	23	90	4	70	25	53	2	18	1.56
61314747--61314911	47	3.5	44	73	14	136	29	16	29	24	1.97
61314744--61314959	94	2.3	94	88	1	317	27	17	30	24	1.97
61314793--61314958	47	3.5	47	68	19	137	27	16	30	25	1.96
61314744--61315014	94	2.9	94	80	3	260	29	17	28	24	1.97
61317724--61317895	93	1.8	93	93	0	299	27	29	22	20	1.98
61317717--61317892	46	3.8	46	78	12	189	28	29	21	20	1.98
61324157--61324358	55	3.7	56	80	9	213	23	24	16	35	1.95
61324699--61324757	30	2.0	30	86	0	82	32	23	3	40	1.71
61328271--61328399	46	2.8	46	86	0	168	20	21	25	31	1.98
61333481--61333529	22	2.3	22	78	3	55	36	14	30	18	1.90
61336034--61336078	24	1.9	24	95	4	83	66	6	0	26	1.16
61336039--61336087	24	2.0	24	88	4	71	69	6	0	24	1.11
61354436--61354508	34	2.2	34	87	2	103	28	19	21	30	1.98
61354452--61354532	34	2.4	33	79	6	90	24	19	27	28	1.99
61355569--61355628	22	2.7	23	73	19	63	66	6	0	26	1.16
61355578--61355611	4	8.0	4	90	9	50	73	2	0	23	0.97
61362039--61362098	22	2.7	23	73	19	63	66	6	0	26	1.16
61362048--61362081	4	8.0	4	90	9	50	73	2	0	23	0.97
61363358--61363449	42	2.2	42	92	0	148	34	21	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61363594--61363717	26	4.8	26	91	4	198	25	23	23	27	2.00
61364520--61364603	27	3.1	27	87	3	116	21	25	22	30	1.98
61364665--61364750	27	3.1	27	75	17	86	34	11	16	37	1.85
61364752--61364858	27	4.0	27	81	3	144	30	8	20	40	1.82
61364755--61364879	27	4.6	27	79	7	137	29	8	20	40	1.83
61375276--61375317	20	2.0	21	81	9	59	38	14	23	23	1.92
61379394--61379431	18	2.1	18	100	0	76	42	5	7	44	1.56
61385284--61385364	29	2.8	28	85	5	108	32	23	16	28	1.96
61388109--61388188	24	3.5	22	75	24	62	13	8	3	73	1.20
61389622--61389684	31	2.0	31	87	0	90	22	25	17	34	1.95
61389894--61389976	25	3.4	25	85	8	82	25	21	22	30	1.99
61389910--61389976	25	2.7	25	88	6	100	23	22	26	26	2.00
61397775--61397835	22	2.9	22	80	4	72	34	18	26	21	1.96
61404390--61404423	17	1.9	18	94	5	61	23	8	5	61	1.47
61418303--61418389	27	3.3	27	85	7	115	41	22	8	27	1.82
61418318--61418430	53	2.1	53	80	6	122	41	18	10	29	1.84
61430715--61430744	15	1.9	16	93	6	53	46	0	16	36	1.47
61439984--61440018	17	2.1	17	94	5	63	65	0	0	34	0.93
61440269--61440307	15	2.6	15	95	0	69	12	12	46	28	1.79
61447192--61447232	17	2.4	17	88	8	57	73	0	14	12	1.11
61449574--61449741	40	4.2	40	83	4	106	25	27	23	23	2.00
61449597--61449741	40	3.6	40	85	4	193	23	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61457564--61457731	40	4.2	40	83	4	106	25	27	23	23	2.00
61457587--61457731	40	3.6	40	85	4	193	23	26	24	25	2.00
61460681--61460834	47	3.3	47	93	0	263	29	29	6	33	1.83
61462677--61462701	13	1.9	13	100	0	50	36	16	16	32	1.90
61469738--61469809	36	2.0	36	100	0	144	41	16	11	30	1.83
61481103--61481150	25	1.9	25	86	0	69	35	29	12	22	1.91
61481197--61481229	16	2.1	16	100	0	66	36	12	18	33	1.88
61481278--61481447	24	7.0	24	89	3	243	30	23	20	25	1.99
61481279--61481447	49	3.5	48	87	4	250	30	23	20	26	1.99
61481279--61481427	73	2.0	73	94	0	262	31	22	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295