genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  100  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32158896--32158952	9	5.9	9	73	15	51	35	21	8	35	1.84
32158892--32158954	20	3.2	20	95	0	117	31	19	12	36	1.89
32166817--32166945	24	5.4	24	87	5	172	30	19	17	32	1.95
32166817--32166945	47	2.7	48	89	6	190	30	19	17	32	1.95
32166803--32166940	71	1.9	72	85	7	192	30	20	19	29	1.97
32166999--32167041	20	2.2	20	95	0	77	30	18	13	37	1.90
32167078--32167125	25	1.9	25	91	0	78	25	14	25	35	1.94
32168860--32168931	37	1.9	37	94	0	126	25	12	11	51	1.72
32177058--32177082	12	2.1	12	100	0	50	16	16	40	28	1.89
32183348--32183384	18	2.1	18	100	0	74	56	5	16	21	1.59
32185074--32185113	21	1.9	21	94	0	71	15	35	22	27	1.94
32185076--32185121	21	2.2	21	88	0	65	15	34	23	26	1.94
32190848--32191020	42	4.1	42	72	3	125	31	26	15	27	1.96
32190848--32191020	84	2.1	84	80	4	188	31	26	15	27	1.96
32195242--32195417	88	2.0	88	100	0	352	27	20	15	36	1.93
32197216--32197328	40	2.8	39	82	5	129	30	24	23	22	1.99
32217400--32217514	42	2.7	42	74	5	124	30	23	16	29	1.96
32222730--32222995	47	5.7	47	77	12	185	28	19	29	22	1.98
32222774--32222993	93	2.3	93	83	8	268	28	19	29	22	1.98
32225740--32225878	36	3.9	35	72	13	97	26	22	22	28	1.99
32232126--32232166	11	3.7	11	80	0	55	21	14	7	56	1.63
32232387--32232420	12	2.9	12	95	4	61	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32235868--32235908	2	20.5	2	100	0	82	51	0	48	0	1.00
32236139--32236192	21	2.5	21	76	8	56	51	1	3	42	1.30
32236168--32236229	32	2.0	31	84	9	81	51	0	1	46	1.10
32238192--32238237	22	2.1	22	91	0	74	26	26	8	39	1.85
32240721--32240827	25	4.3	26	77	7	80	26	23	18	31	1.97
32251650--32251702	20	2.7	20	93	0	97	18	33	33	13	1.90
32261903--32261953	16	3.1	16	80	2	57	50	31	1	15	1.55
32263202--32263248	8	5.9	8	79	0	58	44	23	23	8	1.80
32263202--32263256	16	3.4	16	87	0	83	45	21	23	9	1.80
32263482--32263555	29	2.6	29	82	0	85	27	18	27	27	1.98
32263482--32263590	57	1.9	57	82	1	137	26	16	29	27	1.97
32263504--32263581	29	2.7	29	80	5	79	24	15	29	30	1.95
32268390--32268457	23	2.8	24	80	10	77	32	17	26	23	1.97
32278864--32278976	29	3.9	29	80	1	129	30	29	15	24	1.95
32282938--32283253	47	6.7	47	94	1	519	31	8	30	28	1.87
32283371--32283449	37	2.1	37	88	4	115	25	18	30	25	1.98
32285349--32285422	29	2.6	29	89	4	105	25	16	32	25	1.96
32285765--32285849	39	2.1	40	91	4	136	25	20	27	27	1.99
32285765--32285869	40	2.6	41	86	6	142	27	21	25	24	2.00
32285732--32285869	40	3.5	40	82	7	140	26	22	26	24	2.00
32296192--32296343	40	3.8	40	87	2	180	25	27	21	25	1.99
32296192--32296343	80	1.9	80	84	2	207	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32302262--32302347	26	3.2	28	69	21	92	27	9	15	47	1.75
32302257--32302365	53	2.1	53	98	0	209	26	9	15	48	1.75
32307532--32307595	33	2.0	33	84	9	87	28	23	20	28	1.99
32309013--32309049	5	7.2	5	93	6	65	78	0	21	0	0.75
32308986--32309049	15	4.0	16	78	13	78	70	0	26	3	1.02
32324431--32324634	28	7.3	28	90	0	318	23	15	33	27	1.94
32324951--32325369	27	15.6	27	83	8	471	39	18	7	33	1.80
32325324--32325411	26	3.3	26	82	9	106	36	15	17	30	1.91
32333119--32333151	17	2.0	17	88	5	50	87	3	0	9	0.63
32334314--32334892	287	2.0	287	97	0	1095	23	17	30	28	1.97
32335163--32335254	27	3.4	27	83	0	121	30	22	7	39	1.82
32335258--32335411	80	1.9	80	83	7	197	40	22	9	27	1.85
32335253--32335407	53	2.9	53	83	5	179	40	20	10	28	1.86
32335253--32335411	27	5.9	27	81	6	180	39	21	10	28	1.87
32335447--32335498	27	1.9	27	88	7	79	40	13	11	34	1.81
32336424--32336518	25	3.8	25	90	4	138	26	26	24	23	2.00
32336424--32336545	25	5.0	23	83	10	109	27	24	23	23	2.00
32336739--32336817	31	2.5	31	93	0	140	29	17	25	27	1.98
32339116--32339207	27	3.4	27	83	5	123	27	23	8	40	1.84
32339091--32339221	54	2.4	53	75	3	138	31	22	9	36	1.87
32339239--32339362	27	4.6	27	74	7	101	39	21	9	29	1.85
32340353--32340447	25	3.8	25	88	4	138	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32340353--32340474	25	5.0	23	83	8	100	27	23	22	25	2.00
32340667--32340741	31	2.4	31	90	0	123	26	16	26	30	1.96
32342086--32342186	45	2.3	45	81	5	107	43	13	21	20	1.87
32342325--32342436	27	4.1	27	73	19	108	41	21	20	16	1.91
32345028--32345172	27	5.4	27	86	0	173	35	16	21	26	1.94
32345028--32345187	54	3.0	53	87	3	221	34	16	20	28	1.95
32345497--32345590	28	3.4	28	83	0	116	24	22	23	29	1.99
32349985--32350067	41	2.0	41	100	0	166	31	4	22	40	1.75
32350117--32350261	72	2.0	72	91	0	236	22	24	28	24	1.99
32354380--32354417	7	5.4	7	93	0	58	21	50	0	28	1.49
32360743--32361034	145	2.0	145	91	2	480	47	12	11	28	1.76
32361930--32361978	24	2.0	24	92	0	80	22	16	22	38	1.92
32361934--32361989	24	2.3	24	84	6	69	23	23	19	33	1.97
32372561--32372601	19	2.2	19	100	0	82	14	39	19	26	1.90
32373850--32373917	25	2.7	25	86	4	84	29	22	26	22	1.99
32376142--32376182	21	2.0	20	90	9	66	26	2	26	43	1.67
32377765--32377873	43	2.6	42	85	2	155	31	17	24	26	1.97
32384590--32384700	46	2.4	46	89	0	168	31	18	23	27	1.97
32388358--32388631	46	6.0	46	91	0	397	39	14	22	22	1.91
32391059--32391106	10	4.8	10	86	0	60	22	8	4	64	1.38
32391380--32391450	35	2.0	35	94	0	124	19	16	16	46	1.84
32396810--32396889	5	16.0	5	83	14	103	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32396810--32396889	25	3.2	25	91	7	119	17	0	0	82	0.67
32396810--32396890	16	4.9	16	78	19	87	17	0	0	82	0.66
32396971--32397130	75	2.1	75	86	2	223	28	33	11	26	1.91
32400344--32400393	10	5.0	10	81	13	59	22	8	2	68	1.26
32406626--32406896	94	2.8	95	78	8	266	27	30	17	24	1.97
32408115--32408162	20	2.4	19	83	10	60	10	33	20	35	1.87
32409991--32410115	48	2.7	47	81	7	139	24	28	17	29	1.97
32411604--32411639	13	2.8	13	91	0	54	30	50	16	2	1.60
32412937--32412998	26	2.3	26	89	8	90	46	22	14	16	1.83
32413888--32413929	21	2.0	21	100	0	84	28	23	0	47	1.52
32429526--32429565	12	3.3	12	86	6	55	12	2	2	82	0.87
32431441--32431494	25	2.2	24	77	9	56	16	7	5	70	1.30
32437018--32437148	66	2.0	66	95	1	237	39	19	2	38	1.64
32443223--32443427	27	7.6	27	85	4	252	26	15	28	29	1.96
32447188--32447280	26	3.5	26	84	5	98	26	17	29	26	1.97
32447188--32447340	80	1.9	79	84	4	200	25	16	29	28	1.97
32447188--32447340	27	5.7	27	78	9	145	25	16	29	28	1.97
32447214--32447361	27	5.5	26	73	13	79	25	15	30	28	1.96
32455141--32455343	79	2.6	79	86	5	268	21	22	29	26	1.99
32455141--32455343	40	5.1	40	87	3	270	21	22	29	26	1.99
32466075--32466172	23	4.1	23	79	15	92	45	4	2	47	1.33
32466100--32466165	28	2.3	29	75	15	75	46	3	1	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32467719--32467750	15	2.1	15	100	0	64	68	6	6	18	1.32
32473408--32473456	6	8.2	6	88	0	62	28	12	20	38	1.89
32481210--32481243	16	2.1	16	100	0	68	29	5	29	35	1.81
32481774--32481810	19	1.9	19	88	0	56	35	24	8	32	1.85
32487372--32487423	26	2.0	26	92	0	86	42	30	7	19	1.79
32502091--32502253	42	3.9	42	78	6	170	30	15	25	29	1.96
32502091--32502253	84	2.0	83	85	3	220	30	15	25	29	1.96
32514846--32514972	46	2.8	46	77	8	125	23	24	19	32	1.98
32518354--32518433	42	1.9	42	87	5	117	26	17	27	28	1.98
32525267--32525741	238	2.0	238	100	0	950	34	12	20	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295