genome.fa.s2.2.7.7.80.10.50.1000.275.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  275  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93885523--93885589	34	2.0	34	96	0	125	34	11	16	37	1.85
93889539--93889641	52	2.0	52	98	0	197	44	18	7	29	1.77
93890321--93890570	29	8.4	29	78	5	214	20	26	13	40	1.89
93890229--93890641	30	13.8	30	72	12	158	21	26	14	37	1.92
93890264--93890631	149	2.5	148	85	3	506	21	27	13	37	1.91
93893357--93893504	41	3.7	40	88	4	199	36	17	26	19	1.94
93900545--93900569	11	2.3	11	100	0	50	52	28	0	20	1.47
93910692--93910785	44	2.1	45	94	4	172	32	2	12	52	1.52
93913072--93913110	20	2.0	20	94	0	69	23	41	23	12	1.88
93916201--93916258	12	5.0	11	83	4	53	74	0	6	18	1.04
93916201--93916239	6	6.7	6	91	2	62	79	0	2	17	0.84
93916762--93916800	18	2.2	18	100	0	78	69	5	5	20	1.28
93919453--93919484	14	2.3	14	100	0	64	37	12	15	34	1.85
93923433--93923604	79	2.2	78	83	7	213	25	22	28	24	1.99
93923380--93923602	40	5.6	39	79	7	207	25	21	27	24	1.99
93923460--93923637	79	2.2	80	82	3	200	25	22	28	23	1.99
93931305--93931561	40	6.5	38	76	12	191	26	21	27	24	1.99
93931385--93931561	78	2.3	79	81	4	189	25	22	27	23	2.00
93937368--93937426	30	1.9	31	86	3	84	16	28	33	20	1.95
93938411--93938526	33	3.5	33	82	1	135	25	25	15	32	1.95
93938510--93938684	33	5.3	33	85	6	203	30	20	10	38	1.86
93938539--93938684	66	2.2	66	90	0	238	30	19	10	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93939354--93939401	21	2.2	22	82	14	64	35	18	0	45	1.50
93939853--93939878	13	2.0	13	100	0	52	53	7	0	38	1.30
93945045--93945115	26	2.8	26	80	8	83	26	21	21	30	1.98
93945060--93945128	26	2.7	25	82	10	77	30	18	20	30	1.97
93952909--93952958	25	2.0	25	88	0	73	30	20	20	30	1.97
93953349--93953432	31	2.7	31	90	1	134	30	17	25	26	1.97
93957076--93957217	32	4.4	32	84	6	153	27	21	14	36	1.92
93957044--93957220	65	2.7	65	79	8	173	25	22	15	36	1.93
93957076--93957320	33	7.5	31	80	12	158	29	21	12	36	1.90
93957142--93957315	33	5.3	33	88	6	178	28	21	11	38	1.88
93957928--93957975	21	2.2	21	82	14	62	33	18	0	47	1.49
93961488--93961539	26	2.0	26	88	7	79	38	0	13	48	1.43
93965969--93966013	19	2.4	19	81	7	56	24	26	0	48	1.51
93972070--93972100	16	1.9	16	93	0	53	32	25	12	29	1.93
93972298--93972393	32	3.0	33	86	11	146	26	13	28	32	1.94
93972309--93972403	32	3.2	27	83	14	84	26	13	30	29	1.94
93976980--93977031	27	1.9	27	88	7	79	30	19	19	30	1.96
93979373--93979497	14	8.6	14	75	8	81	46	32	1	20	1.60
93979373--93979472	7	14.0	7	78	4	92	48	33	1	18	1.55
93979373--93979464	21	4.3	21	79	8	105	47	32	1	18	1.56
93980414--93980486	38	1.9	38	86	5	103	38	6	20	34	1.79
93985857--93985911	22	2.5	22	96	0	101	14	10	12	61	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93988025--93988087	32	2.0	32	100	0	126	34	9	12	42	1.76
93990247--93990328	14	5.7	14	68	18	53	47	0	2	50	1.14
93990192--93990389	62	3.3	60	83	11	255	42	1	3	53	1.25
93990556--93990610	16	3.4	16	82	9	76	27	21	5	45	1.74
93990556--93990622	32	2.1	32	88	0	98	25	25	4	44	1.72
93991164--93991220	30	1.9	30	82	7	71	40	24	3	31	1.72
93992345--93992442	22	4.5	22	77	10	94	44	22	18	14	1.85
93992563--93992638	32	2.4	32	82	4	82	40	27	14	17	1.88
93993025--93993123	27	3.7	27	87	0	135	28	11	19	41	1.85
93993018--93993123	54	2.0	54	86	0	149	28	12	19	39	1.88
93993345--93993395	19	2.8	18	77	19	52	23	39	21	15	1.92
93996123--93996164	18	2.3	19	84	12	52	42	2	7	47	1.43
93999224--93999466	4	60.8	4	96	0	423	25	2	24	47	1.63
94006126--94006272	40	3.7	40	83	5	120	25	27	21	25	2.00
94006172--94006352	80	2.3	80	83	9	219	27	27	20	23	1.99
94006169--94006352	40	4.6	40	81	7	196	28	27	20	23	1.99
94013995--94014101	40	2.7	40	84	5	119	25	27	20	27	1.99
94014001--94014221	80	2.8	80	79	7	193	27	27	20	25	1.99
94014041--94014221	80	2.3	80	83	9	219	27	27	20	23	1.99
94014038--94014221	40	4.6	40	81	7	196	28	27	20	23	1.99
94019758--94019788	3	10.3	3	100	0	62	64	0	0	35	0.94
94026598--94026756	43	3.7	43	82	8	173	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94046625--94046799	46	3.8	46	76	13	187	28	29	21	21	1.98
94046633--94046804	93	1.8	93	91	0	281	27	29	21	20	1.98
94046630--94046819	46	4.1	47	72	9	131	28	28	21	21	1.98
94050552--94050582	15	2.0	16	93	6	55	38	0	6	54	1.26
94050852--94050912	18	3.4	18	69	0	59	29	9	18	42	1.82
94051533--94051597	17	3.8	17	83	4	78	32	9	13	44	1.76
94063778--94063904	51	2.5	50	87	5	184	35	8	20	35	1.83
94074439--94074535	29	3.4	28	71	13	90	32	17	11	38	1.85
94074438--94074548	57	1.9	57	94	0	195	33	18	9	38	1.83
94074409--94074535	29	4.4	28	71	13	78	34	18	10	37	1.84
94075767--94075971	101	2.0	101	94	0	356	38	17	18	25	1.92
94079490--94079563	30	2.5	29	84	4	85	41	2	5	50	1.39
94082280--94082317	20	1.9	20	88	0	58	34	18	13	34	1.89
94083069--94083128	10	6.0	10	84	11	79	23	8	0	68	1.16
94083744--94083777	18	1.9	18	94	5	61	26	11	5	55	1.58
94086749--94086794	6	7.5	6	79	20	51	21	2	0	76	0.90
94087755--94087788	11	3.1	11	91	0	50	85	0	14	0	0.60
94088410--94088469	20	3.0	19	80	9	75	23	8	1	66	1.28
94089198--94089231	18	1.9	18	94	5	61	26	11	5	55	1.58
94094186--94094276	28	3.3	28	78	1	94	30	21	34	13	1.92
94094211--94094284	28	2.6	28	76	0	76	27	20	40	12	1.87
94100450--94100483	12	2.8	12	90	0	50	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94101519--94101579	23	2.7	22	75	7	61	34	1	0	63	1.04
94101573--94101659	40	2.1	41	85	2	113	22	2	9	65	1.33
94102637--94102770	38	3.5	38	79	4	144	35	26	19	18	1.95
94106999--94107038	3	13.3	3	100	0	80	67	0	0	32	0.91
94115940--94115978	14	2.7	15	76	8	53	43	10	5	41	1.61
94119551--94119725	46	3.8	46	78	7	192	29	30	19	21	1.97
94119559--94119730	93	1.8	93	91	0	281	28	30	19	20	1.97
94120377--94120436	29	2.1	29	100	0	120	40	21	0	38	1.54
94126122--94126179	30	2.0	29	93	3	98	32	10	18	37	1.85
94130642--94130693	25	2.1	25	96	0	95	19	44	11	25	1.84
94134277--94134320	22	2.0	22	100	0	88	18	22	4	54	1.61
94138429--94138490	32	1.9	32	96	0	115	29	9	22	38	1.86
94143380--94143416	15	2.5	15	100	0	74	29	5	8	56	1.51
94145244--94145298	24	2.4	21	72	18	56	40	9	0	50	1.34
94147515--94147560	9	5.1	9	82	10	58	56	0	0	43	0.99
94147515--94147560	18	2.6	18	89	6	67	56	0	0	43	0.99
94148420--94148449	13	2.3	13	100	0	60	83	0	6	10	0.81
94151053--94151223	46	3.6	49	82	12	198	34	12	22	29	1.92
94151186--94151332	37	4.0	37	92	1	235	36	15	22	25	1.93
94152824--94152850	13	2.1	13	100	0	54	14	37	33	14	1.88
94154932--94155006	27	2.8	26	76	15	73	69	1	9	20	1.23
94157243--94157280	19	2.0	19	90	10	60	71	0	7	21	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94166045--94166082	15	2.4	16	82	8	51	57	18	5	18	1.58
94172978--94173012	15	2.3	15	90	0	52	31	2	0	65	1.07
94177446--94177558	50	2.2	52	90	3	185	38	14	15	31	1.87
94190048--94190130	41	2.0	41	90	0	130	26	12	24	37	1.90
94191779--94191813	18	1.9	18	88	0	52	28	20	8	42	1.81
94191846--94191885	21	2.0	21	95	5	73	40	17	10	32	1.83
94199690--94199715	7	3.7	7	100	0	52	23	0	0	76	0.78
94203535--94203635	33	3.1	33	81	2	98	5	9	24	59	1.52
94203535--94203635	22	4.7	22	83	3	116	5	9	24	59	1.52
94203535--94203635	11	9.4	11	81	3	80	5	9	24	59	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295