genome.fa.s2.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  126  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43171796--43171820	2	12.5	2	100	0	50	52	0	0	48	1.00
43201656--43201879	119	1.9	120	83	6	294	26	26	21	25	2.00
43201655--43201879	40	5.7	40	84	6	278	26	27	21	24	2.00
43207942--43208145	27	7.5	27	85	4	259	26	14	27	30	1.95
43213104--43213328	119	1.9	120	82	6	287	26	27	21	24	1.99
43213085--43213328	40	6.1	40	83	6	282	25	27	21	25	1.99
43216423--43216485	28	2.2	28	91	0	99	31	30	6	31	1.83
43221759--43221821	28	2.2	28	88	0	90	31	28	6	33	1.82
43224404--43224433	6	5.0	6	100	0	60	66	0	0	33	0.92
43230272--43230473	39	5.2	39	88	0	278	31	28	19	20	1.97
43237394--43237445	26	2.0	26	100	0	104	26	19	15	38	1.91
43239300--43239330	15	2.1	15	100	0	62	32	45	0	22	1.53
43241175--43241290	44	2.6	44	90	0	178	29	11	25	34	1.90
43249132--43249200	31	2.3	30	95	5	129	30	8	15	44	1.77
43249668--43249701	14	2.4	14	100	0	68	20	0	17	61	1.34
43250246--43250553	160	1.9	160	82	3	388	31	15	15	37	1.89
43251461--43251521	31	2.0	31	93	0	104	47	11	13	27	1.77
43254517--43255308	47	16.6	47	93	2	1332	33	8	29	29	1.86
43254517--43255308	96	8.3	94	95	0	1332	33	8	29	29	1.86
43254517--43255308	239	3.3	239	95	2	1398	33	8	29	29	1.86
43262801--43262849	25	2.0	25	83	0	62	34	18	12	34	1.88
43284585--43284678	29	3.3	29	86	1	127	32	31	10	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43284891--43284925	16	2.2	16	89	0	52	14	20	14	51	1.76
43297007--43297053	23	2.0	23	100	0	94	48	25	0	25	1.51
43297207--43297256	25	2.0	25	96	0	91	36	26	0	38	1.57
43297431--43297479	25	1.9	26	84	12	66	0	28	0	71	0.86
43297591--43297637	23	2.1	22	84	4	58	48	8	10	31	1.68
43299648--43299672	12	2.1	12	100	0	50	8	44	32	16	1.76
43300910--43300945	2	18.0	2	94	0	54	44	0	5	50	1.25
43308562--43308936	48	7.9	47	74	12	200	27	18	30	24	1.98
43308565--43308731	46	3.6	46	83	7	189	28	17	29	23	1.97
43308523--43308731	46	4.5	45	77	10	172	28	16	30	24	1.97
43308704--43308883	50	3.7	50	79	3	179	25	18	31	25	1.97
43316605--43316916	46	6.6	47	77	12	191	27	16	29	25	1.97
43316651--43316921	48	5.7	46	74	10	165	26	16	30	26	1.96
43316694--43316916	48	4.6	47	75	12	166	27	16	30	26	1.97
43324646--43325060	48	8.8	47	71	13	207	22	28	20	28	1.98
43343826--43343888	27	2.3	27	88	0	90	26	20	31	20	1.98
43350235--43350316	31	2.6	31	82	1	92	58	19	6	15	1.58
43350548--43350641	21	4.6	21	72	17	90	3	48	15	31	1.61
43351235--43351272	19	2.1	18	85	9	51	52	0	7	39	1.31
43356215--43356574	9	41.1	9	68	9	120	36	1	16	45	1.55
43356322--43356647	33	10.0	33	67	15	149	36	1	14	47	1.52
43356241--43356675	130	3.3	130	95	0	762	36	1	15	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43359127--43359339	43	4.8	43	85	7	291	26	18	31	23	1.98
43359228--43359328	50	2.0	50	98	0	193	23	17	35	22	1.95
43360171--43360319	37	4.0	37	97	0	271	25	30	18	24	1.98
43360525--43361007	47	10.1	47	88	4	678	26	30	12	31	1.93
43360525--43361007	194	2.5	192	92	2	794	26	30	12	31	1.93
43360858--43360933	24	3.2	24	63	17	59	25	32	13	28	1.93
43368564--43368665	9	11.4	9	84	2	125	36	0	13	49	1.49
43368997--43369064	24	2.8	24	89	8	111	44	7	20	27	1.78
43373545--43373576	15	2.1	15	94	0	55	31	9	0	59	1.29
43373993--43374043	18	2.8	18	85	8	68	49	1	3	45	1.32
43374349--43374702	41	8.6	41	89	1	521	26	30	20	22	1.98
43374709--43374797	41	2.2	41	87	0	124	21	20	22	35	1.96
43376196--43376230	17	2.0	18	88	5	54	65	0	0	34	0.93
43376346--43376417	26	2.7	26	85	6	83	48	4	4	43	1.41
43379591--43379698	26	4.2	26	88	4	164	37	23	6	33	1.80
43380874--43381030	68	2.3	68	83	3	192	26	13	18	42	1.87
43383690--43383806	43	2.7	43	94	0	198	11	21	33	34	1.89
43383978--43384079	29	3.5	29	65	15	84	24	19	25	30	1.98
43384007--43384106	29	3.4	29	66	10	78	23	17	30	30	1.96
43384065--43384161	28	3.4	28	71	7	79	21	18	32	26	1.97
43383975--43384143	58	2.9	58	91	0	277	23	18	28	28	1.98
43386462--43386618	68	2.3	68	83	3	192	26	13	18	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43388797--43388843	15	3.1	16	88	8	64	48	34	4	12	1.61
43388879--43388934	7	7.9	7	75	11	51	51	28	0	19	1.47
43388976--43389059	29	2.9	29	85	1	105	35	39	1	23	1.63
43389013--43389057	22	2.0	22	82	0	54	42	33	0	24	1.55
43388971--43389067	7	13.4	7	73	6	50	31	42	1	24	1.62
43389431--43389485	28	1.9	29	82	10	69	58	7	0	34	1.26
43404819--43404919	29	3.6	30	75	12	90	22	24	32	19	1.97
43407007--43407082	21	3.6	21	78	0	80	39	19	6	34	1.78
43407033--43407090	21	2.8	21	82	10	73	37	17	8	36	1.80
43416143--43416255	41	2.8	41	76	10	104	21	19	26	32	1.97
43423946--43424127	7	24.9	7	68	17	77	76	0	0	22	0.82
43424000--43424137	18	7.3	18	76	16	111	80	0	0	18	0.76
43423993--43424094	5	20.4	5	75	16	70	81	0	0	18	0.69
43423992--43424125	37	3.8	33	76	18	112	79	0	0	19	0.77
43423994--43424130	41	3.4	40	82	8	145	79	0	0	19	0.78
43423940--43424123	68	2.6	70	79	13	193	76	0	0	22	0.82
43423990--43424125	45	3.0	45	80	15	131	78	0	0	20	0.79
43479713--43479890	27	6.6	27	84	3	205	29	28	15	26	1.96
43479734--43479889	82	1.9	81	88	3	233	29	28	15	26	1.96
43498449--43498541	40	2.3	40	83	9	118	27	23	15	33	1.95
43502037--43502074	11	3.5	11	79	13	51	60	0	0	39	0.97
43506980--43507046	31	2.2	31	86	5	91	17	5	14	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43509243--43509337	40	2.4	38	77	3	91	14	12	34	37	1.84
43517552--43517593	20	2.1	20	90	0	66	50	16	11	21	1.77
43523456--43523485	11	2.7	11	100	0	60	43	30	0	26	1.55
43531582--43531641	29	2.0	31	90	6	97	20	35	0	45	1.51
43532482--43532513	6	5.3	6	100	0	64	18	34	31	15	1.93
43532482--43532520	18	2.2	18	90	0	60	23	33	30	12	1.92
43536447--43536486	21	2.0	20	90	5	62	77	2	5	15	1.04
43540770--43540815	24	2.0	24	86	4	67	60	13	10	15	1.58
43540764--43540816	24	2.2	25	80	10	65	60	13	9	16	1.58
43544417--43544448	15	2.1	16	94	5	57	78	0	0	21	0.76
43549507--43549702	87	2.3	86	84	6	254	42	11	15	30	1.83
43549409--43550129	291	2.5	292	87	2	1033	43	11	13	32	1.79
43549805--43549988	87	2.1	87	83	2	226	44	10	11	33	1.76
43550054--43550203	74	2.0	73	87	1	210	46	9	12	32	1.74
43557026--43557221	87	2.3	86	84	6	254	42	11	15	30	1.83
43556928--43557648	291	2.5	292	87	2	1042	43	10	13	32	1.79
43557324--43557507	87	2.1	87	83	2	226	44	10	11	33	1.76
43557573--43557722	74	2.0	73	87	1	210	46	9	12	32	1.74
43567391--43567421	2	15.5	2	100	0	62	51	0	48	0	1.00
43568329--43568377	4	12.2	4	83	16	66	73	0	26	0	0.83
43568314--43568375	18	3.4	18	81	14	74	67	0	32	0	0.91
43568308--43568367	28	2.2	28	85	8	79	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43568308--43568377	24	3.0	23	82	17	74	68	0	31	0	0.90
43568976--43569008	10	3.3	10	95	0	57	33	0	3	63	1.10
43572039--43572071	14	2.4	14	94	0	57	51	6	0	42	1.26
43571930--43572150	62	3.5	63	87	4	304	38	5	8	47	1.56
43573164--43573197	14	2.4	14	100	0	68	44	5	14	35	1.70
43575236--43575296	8	7.2	8	78	9	50	0	36	0	63	0.94
43576908--43577229	46	6.8	48	73	13	190	22	29	18	28	1.98
43578660--43579207	109	5.2	107	78	13	547	24	1	14	60	1.41
43578821--43579207	112	3.6	106	76	13	357	25	1	13	60	1.40
43578933--43579135	101	2.1	99	85	4	268	26	1	14	57	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295