genome.fa.s2.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  163  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55661194--55661426	43	5.5	43	68	13	160	26	27	17	29	1.97
55661253--55661383	41	3.1	41	65	23	101	26	25	19	29	1.98
55661205--55661439	84	2.8	84	89	0	371	26	27	17	28	1.98
55661190--55661467	84	3.3	82	78	10	292	26	28	17	27	1.98
55663316--55663345	15	2.1	15	93	6	53	36	26	6	30	1.82
55670659--55670701	22	2.0	21	82	13	52	30	20	4	44	1.72
55675986--55676036	24	2.1	24	100	0	102	39	0	7	52	1.30
55680535--55680692	49	3.2	48	95	2	273	31	7	31	30	1.85
55680810--55680888	37	2.1	37	90	0	122	24	18	31	25	1.98
55682753--55682855	43	2.4	43	100	0	206	22	15	35	26	1.94
55682837--55682910	29	2.6	29	89	4	105	25	16	32	25	1.96
55683296--55683652	40	8.9	40	91	0	507	24	22	27	25	2.00
55683255--55683647	80	4.9	80	89	1	495	25	22	27	25	2.00
55683816--55683865	24	2.0	25	84	3	66	32	8	30	30	1.86
55687121--55687278	49	3.2	48	95	2	273	31	7	31	30	1.85
55687396--55687474	37	2.1	37	90	0	122	24	18	31	25	1.98
55694479--55694593	29	4.0	28	76	8	115	28	28	15	26	1.96
55697957--55697991	17	2.0	17	88	5	52	65	11	0	22	1.24
55699042--55699118	29	2.7	29	89	0	109	28	27	19	24	1.99
55699354--55699387	8	4.2	8	92	0	59	8	26	26	38	1.85
55702055--55702125	33	2.2	33	84	0	88	25	8	23	42	1.82
55702069--55702132	33	1.9	33	96	0	119	21	10	20	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55718194--55718438	49	4.9	49	83	4	294	28	27	18	25	1.98
55718210--55718438	100	2.3	98	85	4	307	29	28	17	24	1.97
55719085--55719144	30	2.0	30	83	6	77	30	25	8	36	1.85
55746770--55746794	12	2.1	12	100	0	50	24	20	24	32	1.98
55747596--55747881	48	5.8	48	83	5	302	28	29	15	25	1.96
55747616--55747805	103	1.8	103	90	0	308	29	30	15	25	1.96
55747566--55747853	151	1.9	150	85	2	389	28	29	14	26	1.95
55749143--55749313	93	1.8	93	89	0	270	22	22	26	28	1.99
55749147--55749318	46	3.7	46	77	10	179	22	22	26	29	1.99
55753290--55753514	49	4.5	49	83	4	281	30	26	17	25	1.97
55753290--55753514	100	2.3	98	86	2	297	30	26	17	25	1.97
55760859--55761033	45	4.0	45	86	3	232	21	22	29	26	1.99
55780497--55780672	46	3.8	46	79	12	216	20	21	29	28	1.98
55780494--55780665	93	1.8	93	96	0	317	20	21	29	27	1.98
55785964--55785989	13	2.0	13	100	0	52	30	0	7	61	1.24
55786387--55786452	20	3.3	20	77	8	71	21	27	16	34	1.95
55786386--55786486	39	2.5	40	83	1	132	20	23	16	38	1.93
55787786--55787824	18	2.2	18	90	0	60	30	0	0	69	0.89
55793033--55793106	34	2.2	34	92	0	121	32	28	13	25	1.94
55793161--55793222	27	2.3	27	88	0	88	22	25	12	38	1.90
55793314--55793460	31	4.7	31	91	0	240	28	27	17	26	1.97
55793454--55793566	33	3.5	32	80	13	124	26	22	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55795250--55795302	11	4.7	11	75	13	54	64	3	0	32	1.12
55795250--55795315	34	2.0	33	82	8	82	59	4	0	36	1.18
55801669--55801697	7	4.1	7	100	0	58	0	0	41	58	0.98
55803212--55803296	29	2.9	29	77	3	91	28	12	25	32	1.93
55815216--55815258	18	2.4	18	84	7	52	55	0	4	39	1.20
55816547--55816724	88	2.0	88	93	0	302	31	14	17	35	1.91
55818829--55818857	14	2.1	14	100	0	58	20	13	31	34	1.92
55823331--55823471	44	3.2	44	69	11	135	19	26	21	31	1.98
55823295--55824230	88	10.7	87	85	3	1189	21	23	21	33	1.97
55823295--55824230	263	3.6	263	85	2	1227	21	23	21	33	1.97
55824297--55824424	64	2.0	64	87	0	184	36	15	17	29	1.91
55826173--55826244	12	6.2	12	71	19	55	43	0	2	54	1.15
55844593--55844629	9	4.1	9	92	0	65	45	13	10	29	1.77
55853346--55853380	13	2.7	13	100	0	70	48	0	31	20	1.50
55853489--55853598	26	4.2	26	97	0	184	33	5	24	36	1.79
55855162--55855213	26	2.0	26	92	0	86	15	23	32	28	1.95
55857617--55857691	26	2.8	26	85	4	87	34	21	12	32	1.90
55857795--55857915	27	4.4	27	88	1	170	18	25	23	33	1.97
55857795--55857934	54	2.6	55	87	2	185	18	25	22	34	1.96
55857795--55857934	27	5.2	28	86	7	157	18	25	22	34	1.96
55861273--55861335	3	20.7	3	83	3	72	34	6	0	58	1.23
55861684--55861983	155	2.0	152	90	4	469	40	4	12	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55865164--55865215	16	3.3	16	67	5	52	32	1	7	57	1.38
55865152--55865224	31	2.4	31	100	0	146	36	2	5	54	1.38
55865152--55865294	11	13.0	11	65	23	54	38	3	3	54	1.35
55868053--55868147	27	3.5	27	85	2	129	37	14	20	27	1.91
55870634--55870781	42	3.5	42	78	7	138	30	22	16	30	1.96
55870693--55870797	42	2.5	42	87	0	138	30	20	15	34	1.93
55875514--55875572	16	3.4	16	75	24	66	50	27	0	22	1.49
55875516--55875583	20	3.6	20	77	22	92	51	26	0	22	1.48
55875514--55875586	36	2.0	36	100	0	146	49	28	0	21	1.50
55882103--55882129	2	13.5	2	100	0	54	0	48	0	51	1.00
55888416--55888460	22	2.0	22	91	0	72	33	2	15	48	1.57
55892141--55892185	22	2.0	22	91	0	72	33	2	15	48	1.57
55894447--55894476	14	2.1	14	93	0	51	80	0	20	0	0.72
55895704--55895745	4	11.0	4	90	10	54	78	21	0	0	0.75
55900499--55900583	27	3.1	27	94	0	143	24	10	24	40	1.87
55905147--55905177	14	2.3	14	94	5	55	67	0	3	29	1.06
55907595--55907646	24	2.1	25	82	10	63	36	17	3	42	1.67
55907988--55908070	40	2.1	40	97	0	157	13	16	10	59	1.62
55912298--55912337	20	2.0	20	85	0	53	35	2	7	55	1.42
55917756--55917794	17	2.3	17	86	8	53	35	7	0	56	1.28
55923202--55923321	39	3.1	39	92	0	186	23	21	29	25	1.99
55923206--55923354	39	3.8	39	88	1	183	20	23	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55924783--55924837	15	3.6	16	70	7	51	72	7	1	18	1.16
55924880--55924928	21	2.5	20	83	16	66	73	2	2	22	1.04
55928295--55928362	25	2.8	24	79	14	68	57	1	1	39	1.17
55928328--55928376	24	2.0	24	84	7	64	55	0	2	42	1.11
55928774--55929352	309	1.9	310	82	4	729	44	10	12	32	1.77
55930494--55930528	18	2.0	18	88	5	54	42	0	20	37	1.52
55931237--55931298	30	2.1	30	96	0	115	32	19	4	43	1.72
55932727--55932767	2	21.0	2	95	5	75	51	0	0	48	1.00
55938336--55938383	19	2.6	19	86	3	71	35	2	14	47	1.56
55938406--55938489	42	2.0	42	92	0	141	30	9	13	46	1.74
55938796--55939197	197	2.0	197	97	0	759	32	17	22	27	1.96
55941514--55941539	13	2.0	13	100	0	52	30	7	23	38	1.83
55943109--55943192	42	2.0	42	95	0	150	28	9	15	46	1.77
55943696--55943769	20	3.8	20	78	12	82	60	4	1	33	1.24
55943775--55943810	18	2.0	18	88	0	54	61	2	0	36	1.11
55944153--55944192	21	1.9	21	94	0	71	55	12	12	20	1.69
55955152--55955179	14	2.0	14	100	0	56	21	14	7	57	1.61
55956760--55956798	19	2.1	19	100	0	78	43	20	10	25	1.83
55959075--55959114	20	2.0	20	95	0	71	30	7	10	52	1.62
55959798--55959842	14	2.9	16	87	9	58	42	8	0	48	1.34
55959796--55959842	16	2.9	16	81	12	53	42	8	0	48	1.33
55961906--55961964	27	2.2	27	93	0	100	22	27	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55961960--55962069	53	2.1	53	83	6	134	24	24	12	38	1.90
55962154--55962345	27	7.1	27	83	4	199	31	21	12	34	1.91
55966248--55966333	38	2.2	39	91	8	149	31	0	6	61	1.22
55966253--55966314	19	3.3	19	74	17	74	30	0	8	61	1.25
55966260--55966321	19	3.2	20	73	24	62	33	0	8	58	1.28
55971065--55971202	40	3.5	40	92	3	208	24	23	28	23	2.00
55973010--55973088	4	19.8	4	97	0	140	24	2	25	48	1.64
55977261--55977321	28	2.3	27	83	8	81	26	24	16	32	1.96
55977452--55977587	59	2.4	57	82	5	148	28	22	13	36	1.91
55977752--55977904	53	2.9	52	83	5	175	29	23	13	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295