genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  102  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32892511--32892545	15	2.2	17	90	10	56	20	8	0	71	1.11
32898453--32898615	40	4.0	40	82	10	202	29	14	25	31	1.94
32898453--32898615	85	2.0	82	85	6	220	29	14	25	31	1.94
32906483--32906507	12	2.1	12	100	0	50	48	0	0	52	1.00
32906546--32906603	11	5.4	11	73	22	52	39	3	3	53	1.35
32906587--32906642	25	2.2	26	78	15	64	50	5	1	42	1.35
32906635--32906672	20	1.9	19	89	5	58	52	5	5	36	1.47
32908999--32909214	46	4.6	45	74	9	155	30	19	28	21	1.98
32909084--32909214	49	2.7	48	79	8	149	30	18	29	22	1.97
32909360--32909422	31	2.0	31	100	0	126	26	9	34	28	1.88
32911461--32911675	40	5.4	40	82	5	217	26	28	20	24	1.99
32932306--32932337	15	2.1	15	94	0	55	68	9	6	15	1.36
32933075--32933269	69	2.9	66	74	9	187	36	18	22	22	1.95
32943901--32943962	30	2.0	31	81	9	74	56	9	20	12	1.65
32961678--32961839	43	3.8	43	89	0	261	10	22	33	33	1.88
32962013--32962109	29	3.4	27	73	7	77	22	20	26	29	1.99
32962010--32962120	57	1.9	58	88	1	170	23	19	28	27	1.98
32981759--32981998	115	2.0	120	82	8	298	24	27	22	25	2.00
32981759--32981998	40	6.1	39	83	10	278	24	27	22	25	2.00
32987829--32988052	79	2.8	79	83	6	274	25	27	22	25	2.00
32987829--32988052	40	5.7	40	85	6	262	25	27	22	25	2.00
32990936--32990980	23	2.0	23	100	0	90	44	4	4	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32998148--32998506	47	7.6	47	90	3	549	28	29	8	32	1.87
32998148--32998506	96	3.8	94	90	3	549	28	29	8	32	1.87
33002879--33003067	43	4.4	43	88	5	258	33	27	13	24	1.93
33002860--33003067	85	2.4	86	84	4	262	33	27	13	25	1.93
33005831--33005957	43	3.0	42	82	6	157	29	24	14	30	1.95
33010253--33010320	25	2.7	25	88	2	100	51	13	17	17	1.76
33010728--33010816	27	3.3	27	84	4	117	23	20	20	35	1.95
33010797--33010939	54	2.6	54	80	2	144	27	9	24	38	1.86
33010800--33010925	27	4.7	27	80	3	119	26	8	23	41	1.83
33010880--33010939	27	2.2	27	87	0	84	30	6	26	36	1.82
33010965--33011051	27	3.2	26	80	6	93	29	8	22	39	1.83
33011156--33012843	567	3.0	565	94	1	2956	27	30	15	26	1.96
33014125--33014187	6	10.3	6	78	10	56	42	14	22	20	1.88
33014125--33014199	37	2.0	37	86	0	105	44	14	21	20	1.87
33014618--33014733	27	4.3	27	84	4	162	25	21	18	34	1.96
33014717--33014787	27	2.6	27	86	0	88	25	8	23	42	1.82
33014714--33014856	54	2.6	54	77	2	135	27	8	25	38	1.85
33014797--33014856	27	2.2	27	84	0	75	30	6	28	35	1.83
33014874--33014968	27	3.5	27	80	0	109	29	7	21	42	1.80
33026396--33026450	18	3.1	18	86	0	74	16	20	18	45	1.86
33031562--33031644	31	2.7	31	90	3	125	30	25	14	30	1.95
33031864--33031933	25	2.8	25	91	4	106	25	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33032743--33032806	26	2.4	26	84	2	83	20	25	20	34	1.96
33032743--33032818	26	2.9	25	77	11	80	21	21	22	35	1.96
33032864--33032993	27	4.7	27	74	11	111	30	8	19	41	1.81
33032857--33033026	54	3.1	55	80	4	175	32	10	17	39	1.84
33032923--33033046	27	4.6	26	78	6	115	28	8	20	42	1.80
33033078--33033165	27	3.3	27	86	0	122	42	11	20	26	1.86
33034940--33034978	17	2.3	17	100	0	78	15	33	23	28	1.95
33042879--33042931	18	2.9	18	81	10	72	24	37	20	16	1.93
33052382--33052782	133	2.9	138	87	10	576	59	4	3	31	1.36
33052738--33052799	9	6.7	9	78	10	54	56	0	4	38	1.21
33052744--33052793	18	2.8	18	84	6	66	56	0	6	38	1.24
33054153--33054320	51	3.7	43	71	17	110	29	20	17	32	1.95
33054191--33054342	51	3.2	50	69	21	144	29	19	16	34	1.93
33054471--33054590	64	1.9	64	94	0	213	30	25	19	25	1.98
33054525--33054844	77	4.2	77	91	2	486	35	20	16	26	1.94
33056996--33057171	46	3.8	46	79	12	216	20	21	29	28	1.98
33056993--33057164	93	1.8	93	96	0	317	20	21	29	27	1.98
33069661--33070071	135	3.0	135	91	5	625	61	5	3	29	1.35
33069913--33069942	3	9.7	3	92	7	51	63	0	0	36	0.95
33070048--33070107	3	19.7	3	76	10	59	58	0	5	36	1.20
33070057--33070109	18	2.9	18	86	5	72	56	0	5	37	1.23
33071160--33071197	15	2.5	15	83	8	51	10	0	39	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33080257--33080374	62	1.9	62	98	0	227	35	18	11	33	1.88
33082092--33082147	26	2.1	28	86	6	80	12	19	3	64	1.42
33084804--33084857	20	2.7	20	82	0	63	24	20	18	37	1.94
33084804--33084877	30	2.5	30	86	8	98	21	20	18	39	1.93
33084804--33084868	20	3.2	20	71	16	53	23	21	16	38	1.93
33086512--33086590	40	2.0	40	87	7	117	73	5	13	7	1.22
33087588--33087674	12	7.0	11	72	22	50	68	1	19	10	1.24
33087613--33087675	13	4.9	12	79	12	72	73	0	17	9	1.09
33087613--33087695	26	3.2	26	86	5	105	71	1	18	9	1.20
33087613--33087695	14	6.3	13	75	14	64	71	1	18	9	1.20
33087692--33087754	33	1.9	33	84	12	85	55	6	25	12	1.60
33089529--33089582	20	2.7	20	82	0	63	24	20	18	37	1.94
33089529--33089602	30	2.5	30	86	8	98	21	20	18	39	1.93
33089529--33089593	20	3.2	20	71	16	53	23	21	16	38	1.93
33091974--33092017	22	2.0	23	82	13	56	36	0	2	61	1.09
33095829--33096071	104	2.3	104	81	2	283	23	31	20	25	1.98
33095833--33096104	104	2.6	104	76	5	271	22	31	20	24	1.98
33098062--33098096	17	2.0	18	88	5	54	51	0	0	48	1.00
33101736--33101792	20	3.0	19	84	5	71	49	0	28	22	1.50
33101758--33101804	19	2.4	19	86	10	60	53	0	21	25	1.46
33107434--33107487	27	2.0	27	100	0	108	22	11	7	59	1.56
33117280--33117343	18	3.6	18	93	4	103	10	37	34	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33123356--33123464	37	2.9	37	90	0	155	25	33	19	22	1.97
33123667--33123813	47	3.1	47	87	0	213	26	27	11	34	1.91
33127983--33128374	40	9.8	40	89	0	577	25	27	21	25	1.99
33129643--33129748	37	2.9	37	94	0	176	26	33	17	22	1.96
33129914--33130052	47	3.0	47	89	0	215	25	28	12	33	1.92
33139855--33139977	28	4.4	28	92	2	185	26	12	27	33	1.92
33139880--33139990	28	4.0	27	91	3	143	29	11	25	33	1.91
33144343--33144403	28	2.1	29	82	14	74	40	1	0	57	1.08
33146159--33146239	40	2.0	40	95	0	144	48	16	11	24	1.78
33150252--33150686	216	2.0	216	97	0	816	29	16	23	30	1.96
33157126--33157308	40	4.7	40	82	8	198	24	22	27	25	2.00
33157126--33157303	79	2.3	79	81	7	202	24	23	27	24	2.00
33157179--33157341	78	2.1	78	81	6	188	26	20	26	25	1.99
33169373--33169413	22	1.9	22	85	5	57	43	4	9	41	1.59
33184745--33184886	48	2.9	50	82	8	186	25	30	18	25	1.98
33188474--33188629	23	6.8	23	83	5	149	28	19	17	34	1.95
33188473--33188616	69	2.1	69	81	5	175	27	20	17	34	1.95
33188566--33188642	24	3.3	23	85	8	93	31	23	14	31	1.94
33201203--33201282	36	2.2	36	84	4	108	10	25	37	27	1.88
33214466--33214525	19	3.1	19	83	11	61	0	31	0	68	0.90
33214468--33214513	15	3.1	15	81	9	58	0	30	0	69	0.89
33219316--33219373	30	1.9	30	89	6	91	22	34	25	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33230072--33230110	18	2.2	18	86	9	53	38	7	7	46	1.61
33235239--33235501	47	5.6	47	88	4	359	29	28	8	33	1.86
33242904--33242945	17	2.5	17	100	0	84	38	21	14	26	1.91
33242932--33242957	13	2.0	13	100	0	52	38	23	15	23	1.92
33245147--33245191	19	2.3	20	85	7	58	42	13	15	28	1.85
33250449--33250486	19	2.0	19	85	10	51	18	10	0	71	1.14
33251654--33251699	19	2.5	19	86	6	60	47	0	8	43	1.34
33251770--33251815	12	3.8	12	78	18	51	43	0	0	56	0.99
33252736--33252764	5	5.8	5	100	0	58	0	20	0	79	0.74
33258645--33258670	3	8.7	3	100	0	52	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295