genome.fa.s2.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  20  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5549654--5549760	39	2.7	39	92	0	178	21	21	27	29	1.98
5555885--5555941	17	3.5	15	84	15	53	38	10	15	35	1.82
5555885--5555963	36	2.1	38	90	9	126	37	10	16	35	1.82
5555885--5555963	19	4.2	19	90	9	126	37	10	16	35	1.82
5556412--5556463	22	2.4	21	76	20	54	19	3	11	65	1.40
5556453--5556501	26	2.0	25	88	8	73	20	6	8	65	1.41
5564376--5564434	19	3.2	18	83	7	64	79	1	13	5	0.97
5565324--5565912	88	6.7	88	75	10	461	29	17	24	28	1.97
5565324--5565899	132	4.4	132	94	0	956	30	17	25	27	1.97
5565843--5565950	44	2.4	44	87	3	153	29	16	27	25	1.97
5566325--5566438	43	2.7	43	87	0	165	22	21	28	28	1.99
5567810--5567979	46	3.7	46	76	16	179	19	17	31	31	1.95
5569561--5569629	19	3.6	19	100	0	138	15	34	33	15	1.90
5569848--5569930	31	2.6	31	86	3	103	61	19	3	15	1.48
5570194--5570223	15	1.9	16	93	6	53	0	46	16	36	1.47
5572923--5572965	20	2.2	20	100	0	86	34	23	18	23	1.96
5576468--5576530	28	2.2	28	88	0	90	31	28	9	30	1.89
5577163--5577201	19	2.1	19	85	0	51	15	5	5	74	1.17
5578646--5578702	9	6.3	9	81	0	69	28	3	22	45	1.69
5578647--5578699	27	2.0	27	92	0	88	30	3	20	45	1.69
5578969--5579039	24	3.0	24	79	8	90	47	5	16	29	1.70
5579091--5579221	64	2.0	65	92	1	219	45	3	12	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5579515--5579545	11	2.8	11	100	0	62	38	19	0	41	1.51
5579581--5579609	12	2.3	13	94	5	51	82	3	6	6	0.93
5581092--5581169	39	2.0	39	97	0	147	50	15	11	23	1.76
5583690--5583721	15	2.1	15	94	0	55	28	6	0	65	1.16
5583746--5583829	21	4.1	20	83	8	105	41	36	3	17	1.67
5583746--5583829	7	12.0	7	80	8	91	41	36	3	17	1.67
5585303--5585411	45	2.4	45	86	1	148	33	13	28	23	1.93
5585766--5585844	19	4.2	19	90	9	126	37	10	16	35	1.82
5585756--5585843	36	2.4	36	80	17	119	38	10	15	35	1.82
5588459--5588604	39	3.7	39	91	3	231	22	22	25	29	1.99
5591065--5591104	20	1.9	22	90	10	66	52	0	2	45	1.14
5591057--5591114	26	2.2	26	79	14	66	48	0	3	48	1.18
5592920--5592957	20	2.0	18	90	10	58	73	7	0	18	1.06
5595027--5595075	15	3.4	15	77	11	66	59	0	12	28	1.34
5595019--5595076	28	2.1	28	100	0	116	60	0	10	29	1.30
5595190--5595221	8	4.0	8	95	0	55	50	3	0	46	1.17
5596241--5596277	3	12.3	3	94	0	65	64	2	0	32	1.07
5597938--5598048	44	2.5	44	78	7	109	27	23	18	31	1.97
5597959--5598069	44	2.5	44	80	2	107	30	20	18	29	1.97
5598125--5598627	44	11.1	44	75	5	387	28	21	17	31	1.96
5598177--5598624	89	4.9	88	74	10	325	29	22	17	30	1.97
5598123--5598528	133	3.0	133	81	5	431	29	22	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5598451--5598554	50	2.1	50	81	0	118	28	22	18	30	1.97
5600035--5600073	17	2.4	16	86	4	51	7	5	2	84	0.84
5600223--5600291	3	22.7	3	91	2	111	0	28	0	71	0.87
5605841--5605873	17	1.9	17	88	11	50	69	0	0	30	0.88
5605841--5605874	18	1.9	17	88	5	50	70	0	0	29	0.87
5606130--5606205	22	3.7	21	76	15	68	40	17	6	35	1.75
5606166--5606256	19	4.9	19	88	8	143	37	16	10	35	1.84
5606166--5606248	35	2.3	37	91	6	134	36	15	12	36	1.85
5606180--5606235	17	3.5	15	88	9	60	35	16	10	37	1.83
5606375--5606414	21	2.0	20	90	5	62	12	2	12	72	1.22
5606556--5606594	3	13.0	3	100	0	78	33	0	33	33	1.58
5607375--5607410	19	2.0	17	89	10	54	66	0	0	33	0.92
5607664--5607739	22	3.7	21	76	15	68	40	17	6	35	1.75
5607700--5607790	35	2.5	37	87	8	132	36	17	10	35	1.85
5607714--5607769	17	3.5	15	88	9	60	35	16	10	37	1.83
5607700--5607790	19	4.9	19	88	8	143	36	17	10	35	1.85
5608150--5608315	45	3.7	45	80	3	192	26	28	13	31	1.94
5608147--5608311	89	1.9	89	89	2	260	26	28	13	30	1.94
5608346--5608638	78	3.8	78	90	1	444	25	23	18	32	1.97
5608666--5608838	78	2.2	78	94	0	301	27	25	17	30	1.97
5608468--5608898	198	2.2	199	91	1	686	25	23	18	32	1.97
5608230--5608965	276	2.6	278	76	12	716	26	23	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5608820--5610323	131	11.5	131	88	1	2149	31	24	14	29	1.94
5609046--5610367	175	7.6	173	69	17	574	31	24	14	29	1.94
5608820--5610411	787	2.0	786	91	0	2563	31	24	14	29	1.95
5611367--5611392	9	2.9	9	100	0	52	11	0	0	88	0.52
5614843--5615177	27	12.4	27	89	1	447	29	22	7	40	1.81
5615169--5615278	27	4.1	26	77	4	85	40	21	10	27	1.87
5615248--5615318	36	2.0	36	97	0	133	33	25	14	26	1.94
5615380--5615431	27	1.9	27	88	7	79	40	13	11	34	1.81
5615484--5615575	27	3.4	27	84	3	114	35	18	25	20	1.95
5616378--5616447	25	2.8	25	84	4	88	25	28	22	22	1.99
5616403--5616474	25	3.0	23	82	10	72	27	23	23	25	2.00
5616595--5616686	42	2.2	42	90	0	139	28	13	23	34	1.92
5619016--5619081	19	3.2	21	77	16	66	37	18	7	36	1.79
5619019--5619063	22	2.0	22	86	4	63	37	17	6	37	1.76
5619042--5619132	35	2.5	37	87	8	132	36	17	10	35	1.85
5619056--5619111	17	3.5	15	88	9	60	35	16	10	37	1.83
5619042--5619132	19	4.9	19	88	8	143	36	17	10	35	1.85
5626421--5626543	50	2.4	51	89	1	176	35	15	21	26	1.94
5626519--5626659	31	4.5	31	90	1	203	30	19	25	24	1.98
5626685--5626808	47	2.7	46	82	2	149	28	16	27	28	1.97
5626779--5626876	42	2.3	42	91	3	153	29	16	28	25	1.97
5627217--5627248	11	3.0	11	95	4	57	37	0	18	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5628293--5628338	23	2.0	23	84	12	60	45	10	6	36	1.65
5631694--5631884	26	7.6	25	72	12	126	32	6	3	57	1.42
5631793--5631884	46	2.0	48	85	8	127	29	5	5	59	1.42
5637080--5637240	51	3.2	51	95	0	268	29	22	14	32	1.94
5644020--5644266	49	5.0	50	78	2	264	25	18	26	29	1.98
5645109--5645199	19	4.9	19	85	8	134	35	10	16	37	1.84
5645112--5645206	36	2.6	37	82	11	117	35	10	16	36	1.84
5645109--5645222	19	5.8	22	81	12	78	35	9	16	38	1.82
5645491--5645525	19	1.9	19	88	11	56	31	0	0	68	0.90
5653451--5654205	131	5.8	131	88	3	1118	28	14	24	31	1.95
5654022--5654091	35	2.0	35	94	0	122	25	17	25	31	1.97
5654187--5654352	79	2.1	79	88	3	246	31	18	25	24	1.97
5654187--5654360	78	2.2	79	87	3	262	31	18	25	25	1.98
5654127--5654559	199	2.2	200	91	0	697	33	18	23	24	1.97
5654387--5654603	78	2.8	78	86	4	294	31	18	23	26	1.97
5654634--5654802	45	3.8	45	80	1	187	30	11	29	28	1.91
5655151--5655241	19	4.9	19	88	8	143	35	10	17	36	1.85
5655172--5655227	18	3.5	15	81	18	60	37	10	16	35	1.83
5655151--5655248	35	2.7	37	84	12	132	35	10	18	35	1.85
5655151--5655264	19	5.8	22	83	12	87	35	9	17	37	1.83
5657616--5657649	13	2.6	14	86	13	54	44	0	0	55	0.99
5658212--5658270	31	1.9	31	92	0	100	37	13	8	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659509--5659716	91	2.3	91	83	4	242	35	15	20	29	1.93
5659697--5659747	24	2.3	23	80	19	63	37	21	15	25	1.93
5659706--5659753	24	2.0	24	100	0	96	33	20	20	25	1.97
5663186--5663229	21	2.1	21	87	8	63	4	34	25	36	1.76
5663210--5663812	44	13.9	44	72	11	360	26	22	20	31	1.98
5663260--5663726	46	10.8	42	73	10	228	27	22	20	30	1.98
5663345--5663811	87	5.4	87	72	11	381	26	21	19	31	1.97
5663255--5663812	174	3.2	174	94	2	921	26	22	19	31	1.98
5663772--5664170	88	4.6	87	84	6	382	23	22	22	31	1.99
5663845--5663980	43	3.2	43	64	21	104	22	19	25	32	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295