genome.fa.s2.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  282  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96001922--96001982	20	3.0	20	77	15	63	55	1	0	42	1.09
96001922--96001973	21	2.5	21	84	6	61	57	0	0	42	0.98
96004828--96004875	25	1.9	25	86	0	69	29	14	27	29	1.95
96012620--96012652	11	3.0	11	91	8	50	18	0	3	78	0.87
96014781--96015261	132	3.7	132	87	1	635	33	20	19	26	1.96
96021712--96021746	17	2.1	17	94	0	61	25	0	0	74	0.82
96024374--96024451	38	2.1	38	97	0	147	35	20	14	29	1.92
96025726--96025928	63	3.4	62	69	12	161	13	8	50	27	1.71
96025795--96025949	54	3.0	51	73	5	157	16	9	48	25	1.77
96025807--96025980	51	3.4	51	75	4	161	14	9	48	27	1.75
96026035--96026063	15	1.9	15	100	0	58	0	10	62	27	1.28
96026319--96026372	27	2.0	27	100	0	108	37	14	3	44	1.63
96034839--96034964	65	1.9	65	87	3	182	38	12	15	34	1.85
96039964--96040000	19	1.9	19	100	0	74	27	10	13	48	1.75
96042836--96042874	16	2.5	17	84	16	57	0	33	0	66	0.92
96049416--96049474	24	2.4	25	80	13	68	69	5	3	22	1.23
96049715--96049751	18	2.1	18	89	0	56	56	5	8	29	1.51
96055704--96055851	77	1.9	77	98	0	287	31	20	23	25	1.98
96060265--96060301	3	13.0	3	94	5	60	0	29	0	70	0.88
96069311--96069339	14	2.1	14	100	0	58	41	17	13	27	1.87
96071312--96071358	15	3.1	15	84	9	69	12	17	12	57	1.65
96073748--96073923	46	3.8	45	76	10	176	22	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96073745--96073915	93	1.8	93	89	0	270	22	22	28	26	1.99
96081867--96081938	23	2.9	26	71	25	82	37	2	9	50	1.50
96088827--96088902	37	2.0	38	92	5	127	35	19	15	28	1.93
96093286--96093323	17	2.2	18	85	4	51	42	7	0	50	1.31
96098054--96098079	7	3.7	7	100	0	52	53	0	0	46	1.00
96098283--96098342	30	2.0	31	86	3	86	40	13	5	41	1.66
96107268--96107313	22	2.1	22	83	0	56	23	15	8	52	1.70
96115601--96115635	18	1.9	18	94	0	61	51	8	8	31	1.63
96123976--96124094	61	2.0	61	93	0	202	41	8	24	26	1.83
96125923--96126162	51	4.7	51	79	6	227	37	20	25	16	1.93
96127533--96127806	46	6.0	46	91	0	406	22	23	14	39	1.91
96137565--96137620	21	2.6	21	75	25	55	60	1	1	35	1.17
96143179--96143211	8	4.2	8	92	7	59	87	0	0	12	0.53
96143179--96143211	15	2.1	16	94	5	59	87	0	0	12	0.53
96143178--96143228	8	6.8	8	78	13	54	78	1	0	19	0.85
96143195--96143240	22	2.1	21	88	4	65	71	4	0	23	1.03
96147024--96147103	3	26.3	3	72	20	53	30	3	1	65	1.18
96147015--96147103	9	9.4	9	72	16	56	28	3	1	67	1.14
96147013--96147064	15	3.6	14	76	7	50	23	1	0	75	0.91
96147023--96147103	12	6.8	12	75	12	78	29	3	1	65	1.17
96147321--96147355	16	2.2	16	89	0	52	37	0	2	60	1.12
96159181--96159934	44	17.5	42	67	13	246	34	20	23	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96159134--96159278	44	3.3	44	70	11	145	34	18	24	22	1.96
96159119--96160228	173	6.4	172	83	5	903	35	20	22	20	1.96
96159171--96160228	260	4.1	260	82	5	1053	36	21	22	20	1.96
96159114--96160238	87	13.0	87	84	5	1024	35	20	22	20	1.96
96159913--96160159	79	3.0	79	82	8	262	40	20	21	18	1.92
96159992--96160223	44	5.3	44	71	12	154	39	21	20	18	1.92
96160904--96160928	8	3.1	8	100	0	50	12	0	0	88	0.53
96160931--96160991	11	5.3	11	73	23	54	32	3	1	62	1.21
96161069--96161114	12	3.7	13	80	13	53	30	0	6	63	1.20
96161196--96161413	120	1.8	120	84	5	298	31	3	5	59	1.37
96169707--96169769	27	2.3	27	91	0	99	47	19	25	7	1.76
96174359--96174397	16	2.5	16	87	4	53	38	5	0	56	1.22
96181729--96181767	13	3.0	13	82	10	53	43	0	0	56	0.99
96181875--96181917	18	2.4	18	80	3	52	51	0	0	48	1.00
96187917--96187971	27	2.0	27	100	0	110	41	21	7	29	1.80
96190596--96190659	25	2.6	26	78	9	71	25	25	18	31	1.98
96193909--96193963	21	2.7	20	78	16	58	47	3	1	47	1.30
96194457--96194494	19	2.1	19	90	5	60	26	0	15	57	1.38
96194864--96195001	40	3.5	38	74	8	118	25	15	25	33	1.95
96197358--96197384	13	2.1	13	100	0	54	14	33	37	14	1.88
96211944--96211995	15	3.6	15	80	12	56	44	0	1	53	1.11
96211718--96212229	119	4.3	120	95	2	910	42	2	5	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96211718--96212234	239	2.2	238	94	3	907	42	2	5	49	1.38
96212191--96212232	15	2.7	16	82	14	52	45	0	2	52	1.13
96212185--96212223	15	2.7	15	88	7	55	46	0	0	53	1.00
96212335--96212369	18	2.0	17	88	5	52	45	0	0	54	0.99
96212167--96212475	157	2.0	156	96	0	573	47	4	2	44	1.39
96212605--96212672	16	4.2	16	82	0	91	36	30	2	29	1.72
96213534--96213574	22	1.9	21	90	5	64	70	0	0	29	0.87
96218470--96218520	17	2.9	18	82	11	70	37	11	11	39	1.79
96218459--96218586	18	7.2	18	79	5	98	36	15	12	35	1.85
96218691--96218732	6	7.2	6	89	5	68	47	16	19	16	1.83
96218762--96218954	45	4.3	45	88	2	264	40	20	18	20	1.91
96221036--96221068	2	17.0	2	93	6	59	51	0	0	48	1.00
96222590--96222800	98	2.1	99	86	6	309	43	2	3	50	1.33
96222595--96222800	100	2.1	100	86	6	258	43	2	3	50	1.34
96231981--96232009	15	2.0	15	93	6	51	6	6	13	72	1.26
96235895--96235961	28	2.4	28	85	7	82	32	2	1	62	1.19
96235991--96236032	22	1.9	21	85	9	57	47	2	0	50	1.14
96239464--96239714	36	7.0	36	83	3	213	12	22	41	23	1.88
96239464--96239714	108	2.3	108	81	2	272	12	22	41	23	1.88
96241590--96241645	26	2.2	26	96	0	103	32	28	5	33	1.80
96243715--96243783	29	2.3	29	85	5	84	52	7	1	39	1.38
96249601--96249693	48	2.0	48	81	10	111	37	20	20	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96249668--96249789	47	2.6	47	94	0	217	36	13	23	26	1.91
96249768--96249964	54	3.7	53	78	11	195	39	17	20	22	1.92
96249776--96249986	108	2.0	109	82	3	266	40	17	20	21	1.91
96250078--96250111	16	2.1	16	88	5	50	41	2	20	35	1.68
96252340--96252392	25	2.2	24	86	3	70	35	22	22	18	1.95
96253827--96253966	25	5.6	25	77	8	85	17	26	20	35	1.95
96253886--96254067	25	7.3	24	75	15	122	19	24	19	36	1.95
96254074--96254128	24	2.2	25	87	3	76	12	20	23	43	1.86
96256049--96256277	100	2.3	100	83	2	280	26	29	24	19	1.99
96260867--96261086	100	2.2	98	81	1	260	26	29	24	20	1.99
96261052--96261091	20	2.0	20	90	4	64	20	40	25	15	1.90
96264353--96264467	59	2.0	58	81	11	137	29	13	14	42	1.84
96265884--96265924	22	2.0	22	85	9	59	31	0	12	56	1.36
96271682--96271768	39	2.2	39	93	0	147	33	9	22	34	1.86
96280496--96280538	21	2.0	21	95	0	77	23	6	18	51	1.70
96283937--96283965	3	9.7	3	100	0	58	68	0	0	31	0.89
96285214--96285241	14	2.0	14	100	0	56	50	7	14	28	1.69
96286876--96286932	29	2.0	29	85	0	78	33	14	10	42	1.79
96291437--96291480	19	2.3	19	84	7	54	45	0	0	54	0.99
96293458--96293503	22	2.1	22	91	0	74	41	13	23	21	1.88
96294615--96294650	13	2.8	14	84	16	51	27	25	0	47	1.52
96294602--96294642	18	2.2	19	87	12	59	29	24	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96294758--96294899	39	3.7	38	73	11	103	30	26	21	21	1.98
96295138--96295176	18	2.1	19	90	4	62	48	10	0	41	1.37
96296486--96296542	5	11.0	5	78	14	62	56	1	0	42	1.10
96296485--96296540	12	4.5	12	81	16	69	55	1	0	42	1.10
96296487--96296542	26	2.2	26	90	6	69	55	1	0	42	1.10
96307670--96307719	25	2.0	25	100	0	100	32	16	8	44	1.76
96308459--96308517	25	2.3	25	83	13	68	33	20	25	20	1.97
96308572--96308702	25	5.3	24	70	14	72	41	20	19	18	1.91
96316218--96316307	24	3.7	24	80	4	101	38	20	25	15	1.91
96318783--96318810	14	2.0	14	100	0	56	57	7	14	21	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295