genome.fa.s2.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  137  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46726882--46727054	46	3.7	46	79	11	201	30	26	20	23	1.98
46726932--46727073	46	3.1	45	74	18	132	28	28	19	23	1.98
46740319--46740368	26	1.9	26	84	8	66	14	18	34	34	1.90
46742947--46743036	44	2.1	43	95	2	162	20	23	0	56	1.42
46743455--46743500	21	2.3	20	85	10	60	52	0	0	47	1.00
46746292--46746458	46	3.7	44	72	10	131	25	29	18	26	1.98
46753181--46753671	47	10.4	47	94	0	811	33	8	28	29	1.87
46753790--46753868	37	2.1	37	88	4	115	25	18	30	25	1.98
46757491--46757707	47	4.6	47	74	13	189	20	28	23	26	1.99
46757541--46757707	46	3.6	46	75	10	160	21	28	23	26	1.99
46758787--46758821	18	1.9	18	94	0	61	25	14	22	37	1.92
46758872--46758908	9	4.1	9	85	0	56	48	13	8	29	1.71
46759492--46759535	16	2.5	17	82	14	54	36	15	0	47	1.46
46760526--46760566	18	2.3	18	88	12	59	58	7	0	34	1.26
46760934--46760974	15	2.5	17	80	11	59	65	0	0	34	0.93
46767353--46767385	16	2.1	16	100	0	66	33	6	24	36	1.80
46770868--46771038	93	1.8	93	85	0	243	23	21	26	28	1.99
46779013--46779119	34	3.1	34	62	19	87	38	21	5	34	1.77
46779023--46779128	33	3.2	33	62	19	83	36	20	7	34	1.81
46779011--46779146	68	2.0	68	100	0	272	38	22	5	33	1.78
46780662--46780700	21	1.9	20	84	5	51	51	20	2	25	1.60
46783700--46783927	48	4.9	48	76	7	207	25	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46783697--46783927	91	2.5	94	82	4	245	25	20	25	28	1.99
46797425--46797531	43	2.5	43	86	8	139	35	23	14	27	1.93
46801511--46801599	28	3.1	29	76	7	94	31	26	12	29	1.93
46803946--46804035	29	3.1	29	85	1	119	27	27	15	28	1.96
46812755--46812818	32	2.0	32	96	0	119	31	23	15	29	1.95
46815448--46815498	26	2.0	26	92	0	84	25	23	23	27	2.00
46815449--46815506	26	2.2	26	87	0	80	25	22	24	27	2.00
46816943--46817071	66	2.0	66	81	6	154	27	22	19	31	1.98
46830007--46830256	68	3.8	65	76	8	222	32	15	28	24	1.95
46834616--46834796	67	2.8	63	75	8	195	32	14	28	23	1.95
46840364--46840414	25	2.0	25	100	0	102	58	11	3	25	1.50
46843315--46843422	42	2.6	42	79	5	112	25	16	23	34	1.95
46850715--46850784	36	1.9	36	82	5	88	22	14	32	30	1.94
46858351--46858461	57	1.9	57	94	0	195	28	14	23	33	1.94
46866763--46866802	18	2.3	18	86	4	55	32	5	0	62	1.17
46866960--46867108	47	3.1	45	77	11	145	30	8	6	55	1.53
46867345--46867393	14	3.5	14	76	17	57	36	2	0	61	1.08
46867541--46867604	26	2.6	24	81	11	76	37	6	4	51	1.48
46869766--46869943	49	3.6	49	83	8	216	29	25	17	27	1.97
46876758--46876836	29	2.7	29	86	5	106	27	32	15	24	1.95
46885137--46885215	29	2.7	29	86	5	106	27	32	15	24	1.95
46891468--46891652	79	2.3	82	84	7	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46891449--46891652	40	5.1	40	82	8	238	25	27	22	25	2.00
46897515--46897544	15	2.0	15	93	0	51	23	10	0	66	1.21
46897461--46897944	88	5.5	86	77	10	460	29	15	19	35	1.93
46897603--46897637	14	2.5	14	95	0	61	17	17	5	60	1.55
46897437--46897762	180	1.8	180	92	2	557	30	15	17	37	1.90
46897451--46897889	180	2.5	179	83	7	538	29	16	17	36	1.92
46899565--46899604	18	2.3	18	86	4	55	32	5	0	62	1.17
46899752--46899902	47	3.2	45	78	10	149	29	7	5	56	1.52
46900145--46900293	14	11.8	12	69	19	72	33	3	4	59	1.33
46900148--46900217	26	2.6	25	78	10	68	34	2	2	60	1.26
46900200--46900229	15	2.0	15	100	0	60	33	0	0	66	0.92
46905100--46905151	26	2.0	27	85	11	72	26	23	17	32	1.96
46905768--46905827	27	2.3	27	82	2	68	21	25	20	33	1.97
46909378--46909409	16	2.0	16	100	0	64	56	12	0	31	1.37
46919215--46919247	18	1.9	17	88	11	50	27	15	9	48	1.74
46921063--46921170	28	3.9	28	84	8	139	27	29	14	27	1.95
46925253--46925384	27	4.9	27	83	1	167	36	16	20	26	1.94
46929472--46929577	53	2.0	53	100	0	212	30	9	22	37	1.86
46929796--46930020	49	4.5	48	84	5	270	27	17	26	29	1.97
46929789--46930020	99	2.3	100	83	5	283	26	17	26	28	1.98
46932727--46932804	39	2.0	39	100	0	156	25	12	20	41	1.88
46933072--46933128	15	3.9	15	74	21	66	8	14	14	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46934652--46934699	22	2.2	22	100	0	96	29	6	12	52	1.63
46935965--46936007	21	2.0	22	86	13	63	32	13	4	48	1.63
46952308--46952350	21	2.0	21	86	8	61	60	11	0	27	1.31
46954341--46954500	33	4.9	32	78	3	140	16	22	18	42	1.89
46954342--46954500	66	2.4	66	79	7	171	16	22	18	42	1.89
46962204--46962370	43	3.9	43	76	9	162	32	23	16	27	1.96
46966364--46966427	29	2.1	31	85	5	87	34	0	3	62	1.11
46967646--46967723	27	2.9	26	88	3	102	37	20	21	20	1.95
46967923--46968110	27	7.0	27	84	2	216	23	20	20	35	1.96
46968127--46968558	27	16.0	27	83	5	516	40	9	21	27	1.85
46983053--46983133	42	2.0	39	83	11	101	33	2	2	61	1.22
46995696--46995979	27	10.5	27	79	8	226	39	21	9	28	1.85
46995696--46995982	54	5.3	53	81	3	288	39	22	9	28	1.85
46995696--46996037	81	4.2	81	79	5	291	39	21	9	28	1.85
46995962--46996050	27	3.3	26	84	6	106	40	16	11	31	1.84
46995937--46996050	54	2.1	54	83	6	142	40	18	11	29	1.86
46995973--46996080	27	4.0	27	85	2	128	37	19	15	26	1.92
47001350--47001465	27	4.3	26	82	11	135	18	23	22	35	1.96
47005509--47005616	43	2.5	44	76	7	114	32	25	13	28	1.94
47005576--47005797	50	4.6	49	75	10	163	24	27	17	29	1.97
47005622--47005755	50	2.7	50	81	6	164	20	32	18	28	1.97
47005622--47005802	100	1.9	95	79	10	204	23	30	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47011820--47011936	43	2.8	42	71	7	103	33	26	13	26	1.94
47011909--47012030	47	2.6	47	92	1	190	28	23	16	31	1.96
47012002--47012177	50	3.6	50	76	9	159	23	29	17	29	1.97
47014258--47014287	15	2.1	14	93	6	51	50	13	0	36	1.42
47014750--47014831	28	2.9	28	75	0	74	23	29	18	29	1.97
47014796--47014869	37	2.0	37	97	0	139	21	20	21	36	1.95
47016948--47016999	25	2.1	25	85	3	70	26	17	23	32	1.96
47017047--47017107	21	2.9	21	80	4	79	34	19	9	36	1.85
47017047--47017105	5	11.4	5	76	7	55	35	20	8	35	1.83
47024939--47024999	21	2.9	21	85	4	88	32	19	11	36	1.88
47024939--47024999	10	5.9	10	77	11	61	32	19	11	36	1.88
47030887--47030932	21	2.0	24	84	12	62	71	6	10	10	1.30
47037880--47037956	27	2.8	28	79	13	72	45	2	1	50	1.23
47045593--47045626	16	2.2	15	94	5	59	38	0	2	58	1.13
47046102--47046136	17	2.1	17	88	0	52	17	51	17	14	1.77
47047756--47047788	16	2.1	16	94	0	57	21	3	30	45	1.67
47054088--47054157	27	2.6	27	95	2	113	31	28	12	27	1.93
47054088--47054185	28	3.5	28	90	2	135	31	28	13	26	1.94
47062174--47062243	27	2.6	27	95	2	113	31	28	12	27	1.93
47062174--47062271	28	3.5	28	90	2	135	31	28	13	26	1.94
47064161--47064231	27	2.6	27	78	8	81	30	9	18	40	1.83
47064400--47064470	22	3.2	21	64	24	56	23	23	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47064592--47064638	18	2.6	18	89	0	76	23	19	17	40	1.91
47068333--47068362	13	2.3	13	94	0	51	30	6	6	56	1.51
47068620--47068685	23	2.9	23	84	6	89	36	16	12	34	1.86
47068744--47068810	28	2.4	28	89	2	98	40	5	14	38	1.71
47072709--47072820	28	4.0	28	82	4	145	30	30	9	29	1.89
47072808--47072899	40	2.3	40	86	0	121	30	27	18	23	1.98
47080316--47080391	39	1.9	40	89	2	118	32	26	17	23	1.96
47085303--47085333	15	2.1	15	93	0	53	54	25	0	19	1.44
47085605--47085659	24	2.4	21	72	18	56	40	9	0	50	1.34
47094074--47094101	4	7.0	4	100	0	56	50	25	0	25	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295