genome.fa.s2.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  203  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69493366--69493442	37	2.1	37	100	0	154	36	14	12	36	1.84
69496239--69496283	22	2.0	23	82	4	56	42	0	13	44	1.43
69499646--69499696	23	2.2	23	86	6	68	76	3	17	1	1.03
69499660--69499698	14	2.8	14	85	14	62	76	0	20	2	0.90
69501732--69501907	67	2.6	67	90	1	273	31	21	28	18	1.97
69509111--69509170	27	2.3	26	85	2	75	35	20	23	21	1.96
69509175--69509301	66	1.9	66	88	6	195	30	23	28	17	1.97
69513562--69513629	29	2.3	29	85	5	93	27	30	13	27	1.94
69523960--69524131	46	3.7	45	77	13	179	29	27	20	23	1.99
69523965--69524133	93	1.8	93	90	2	277	28	27	20	23	1.98
69524553--69524613	30	2.0	30	90	0	95	31	24	8	36	1.85
69536564--69536813	39	6.5	39	77	9	210	19	28	16	35	1.94
69536666--69536739	38	1.9	38	86	5	105	22	27	14	35	1.94
69536716--69536782	33	2.0	33	88	0	98	19	29	16	34	1.94
69543870--69543911	16	2.6	16	92	0	66	80	0	7	11	0.88
69543909--69544469	283	2.0	283	92	0	933	28	14	13	43	1.83
69551277--69551347	24	3.1	23	76	19	76	30	14	12	42	1.82
69551508--69551600	19	5.1	19	67	17	70	44	12	10	32	1.77
69551498--69551626	54	2.4	54	89	2	188	40	14	10	34	1.80
69555596--69555688	19	5.1	19	71	21	81	47	13	9	29	1.75
69555586--69555714	54	2.4	54	89	0	195	41	14	9	34	1.78
69557324--69557517	56	3.4	56	85	3	203	26	15	32	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69557324--69557499	84	2.1	84	84	4	221	24	15	33	26	1.95
69557324--69557499	28	6.3	27	79	6	174	24	15	33	26	1.95
69557816--69557875	27	2.2	27	87	0	84	41	15	8	35	1.77
69557866--69557927	27	2.3	27	97	0	115	38	14	14	32	1.86
69557866--69557954	27	3.3	27	87	6	101	38	17	15	28	1.91
69560777--69560959	28	6.6	28	84	3	180	25	14	33	26	1.95
69560784--69560977	56	3.4	56	86	3	212	26	14	32	25	1.95
69560784--69560959	84	2.1	84	85	4	230	24	15	33	26	1.95
69561276--69561370	26	3.6	27	81	7	99	42	16	9	31	1.81
69561324--69561385	27	2.3	27	97	0	115	38	14	14	32	1.86
69561324--69561412	27	3.3	27	87	6	101	38	17	15	28	1.91
69564232--69564414	28	6.6	28	84	3	180	25	14	33	26	1.95
69564239--69564432	56	3.4	56	86	3	212	26	14	32	25	1.95
69564239--69564414	84	2.1	84	85	4	230	24	15	33	26	1.95
69564731--69564792	27	2.3	27	83	5	81	45	16	6	32	1.72
69564781--69564842	27	2.3	27	97	0	115	38	14	14	32	1.86
69564781--69564869	27	3.3	27	87	6	101	38	17	15	28	1.91
69567692--69567874	28	6.6	28	84	3	180	25	14	33	26	1.95
69567699--69567892	56	3.4	56	86	3	212	26	14	32	25	1.95
69567699--69567874	84	2.1	84	85	4	230	24	15	33	26	1.95
69568191--69568252	27	2.3	27	83	5	81	45	16	6	32	1.72
69568241--69568302	27	2.3	27	97	0	115	38	14	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69568241--69568329	27	3.3	27	87	6	101	38	17	15	28	1.91
69571140--69571203	28	2.3	28	86	0	83	20	17	34	28	1.95
69571519--69571713	81	2.4	81	86	1	257	40	19	7	32	1.80
69571528--69571723	27	7.3	27	84	3	207	40	20	7	31	1.79
69571650--69571738	27	3.3	27	87	3	117	43	12	7	35	1.71
69577350--69577615	103	2.6	104	90	3	419	19	20	29	29	1.97
69582764--69582788	12	2.1	12	100	0	50	20	24	32	24	1.98
69748967--69749018	27	2.0	26	84	3	68	17	26	21	34	1.95
69751571--69751732	45	3.8	43	74	14	122	24	19	27	29	1.98
69751560--69751693	45	3.1	43	76	15	125	23	18	25	32	1.97
69754372--69754547	46	3.8	46	77	7	203	29	27	20	22	1.99
69757897--69758118	49	4.5	49	93	1	356	28	28	7	35	1.84
69761544--69761644	28	3.6	28	73	7	96	27	28	21	21	1.99
69761654--69761885	40	5.8	40	88	1	306	27	29	21	20	1.98
69763468--69763638	49	3.5	49	93	3	285	28	29	8	33	1.86
69763553--69763635	27	3.3	27	63	27	72	32	30	4	32	1.79
69766722--69766801	29	2.8	29	90	5	126	57	15	15	12	1.66
69766780--69766819	15	2.7	15	76	0	53	62	17	10	10	1.53
69769796--69769964	46	3.7	46	71	7	153	31	26	18	23	1.97
69776336--69776586	68	3.8	68	77	9	193	24	28	16	30	1.97
69777247--69777307	30	2.0	30	83	0	77	31	22	8	37	1.84
69799919--69800032	29	4.0	29	85	6	126	28	14	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69804680--69804757	22	3.5	22	80	0	75	34	24	25	15	1.95
69805672--69805702	13	2.4	13	100	0	62	29	12	19	38	1.89
69808448--69808521	27	2.7	27	81	4	78	27	18	20	33	1.96
69817124--69817266	67	2.1	67	89	2	216	29	22	28	19	1.98
69817712--69817771	27	2.2	27	96	0	111	23	18	21	36	1.95
69817791--69818066	53	5.2	54	82	6	262	30	9	20	39	1.84
69817809--69818066	80	3.2	77	78	12	252	31	8	20	39	1.82
69817810--69818066	27	9.6	27	82	4	245	31	8	20	40	1.82
69820218--69820269	27	2.0	26	84	3	68	34	21	26	17	1.95
69820895--69821090	27	7.3	27	83	1	223	22	20	21	35	1.96
69820896--69821090	54	3.6	54	84	0	246	23	20	21	35	1.96
69821130--69821415	27	10.6	28	83	7	267	30	9	19	39	1.84
69821130--69821415	81	3.6	78	81	6	311	30	9	19	39	1.84
69824869--69824979	37	3.0	37	93	2	179	27	30	18	23	1.98
69825103--69825588	49	10.1	48	91	4	766	29	30	8	31	1.88
69825103--69825588	47	10.1	47	91	4	756	29	30	8	31	1.88
69825103--69825588	96	5.0	95	94	2	737	29	30	8	31	1.88
69825103--69825588	145	3.4	145	92	3	795	29	30	8	31	1.88
69829346--69829451	55	1.9	56	88	5	162	32	25	16	26	1.96
69831703--69831817	43	2.7	42	78	7	135	24	19	25	31	1.98
69834101--69834190	28	3.3	28	90	4	139	20	21	23	35	1.96
69834100--69834214	27	4.3	26	89	5	140	20	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69844485--69844654	93	1.8	93	91	2	279	29	28	20	21	1.98
69844492--69844700	46	4.5	46	79	7	244	29	28	20	22	1.98
69847521--69847782	30	8.7	30	73	8	183	39	11	24	25	1.88
69847508--69847719	90	2.3	89	87	7	293	37	11	24	26	1.90
69847555--69847782	90	2.5	91	81	7	250	39	11	25	24	1.88
69847552--69847795	60	4.1	59	79	5	240	38	12	24	23	1.90
69853785--69853844	27	2.3	26	85	2	75	35	20	23	21	1.96
69854912--69854951	17	2.4	17	95	0	71	20	40	27	12	1.88
69855123--69855408	27	10.6	27	86	0	322	40	20	8	31	1.82
69855447--69855692	27	9.1	27	84	2	280	37	18	19	24	1.94
69855450--69855688	81	3.0	81	88	1	318	37	19	19	23	1.94
69855941--69855992	27	2.0	26	84	3	68	17	25	23	34	1.96
69856240--69856277	18	2.1	18	90	0	58	23	15	10	50	1.75
69856240--69856268	12	2.4	12	100	0	58	24	17	6	51	1.69
69878204--69878435	49	4.7	49	81	3	275	29	27	17	25	1.98
69878682--69878735	27	2.0	27	85	0	72	38	14	7	38	1.75
69881193--69881273	29	2.8	29	88	1	126	58	14	14	12	1.64
69895170--69895217	25	2.0	24	84	12	62	25	22	20	31	1.98
69895267--69895333	20	3.3	20	91	0	107	32	22	10	34	1.88
69895368--69895415	24	2.0	25	87	4	71	27	14	25	33	1.94
69898990--69899022	16	2.1	16	94	0	57	39	9	12	39	1.74
69900720--69900936	48	4.5	47	85	6	233	34	28	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69907656--69907928	48	5.7	49	81	8	294	34	28	18	18	1.95
69907666--69907928	144	1.8	144	81	4	334	34	28	18	18	1.95
69910839--69910910	25	3.1	23	76	19	78	43	1	6	48	1.38
69910839--69910898	20	2.7	21	80	15	68	43	0	6	50	1.28
69911350--69911566	86	2.4	85	77	11	204	36	17	8	36	1.80
69911839--69911958	46	2.5	48	73	11	122	37	2	0	60	1.11
69911903--69911962	20	3.0	19	75	7	57	33	3	0	63	1.11
69911903--69911962	19	3.0	20	73	11	61	33	3	0	63	1.11
69913566--69913683	58	2.0	58	98	0	227	33	21	12	33	1.91
69915894--69915991	48	2.0	48	100	0	196	44	18	18	18	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295