genome.fa.s2.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  139  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47329055--47329209	43	3.6	44	73	14	135	32	25	16	25	1.96
47329712--47329771	28	2.1	29	84	9	79	36	21	1	40	1.64
47336753--47336870	44	2.7	43	82	6	150	31	27	19	22	1.98
47338450--47338589	11	12.7	11	68	20	71	6	20	0	72	1.12
47338442--47338558	18	6.2	18	72	20	87	5	21	0	72	1.09
47338518--47338589	27	2.7	27	75	16	69	8	18	0	73	1.07
47338442--47338558	19	6.2	18	71	17	76	5	21	0	72	1.09
47344101--47344148	14	3.5	14	78	13	55	10	16	0	72	1.10
47344143--47344197	19	2.8	19	88	2	74	5	21	1	70	1.16
47344145--47344197	20	2.7	21	88	5	67	3	22	1	71	1.12
47354418--47354530	29	3.9	29	73	7	97	27	15	30	26	1.96
47358284--47358316	16	2.0	17	88	5	50	21	0	33	45	1.52
47363191--47363252	30	2.1	30	93	0	106	27	24	12	35	1.92
47365441--47365546	53	2.0	53	94	0	185	33	7	14	45	1.73
47367920--47368029	55	2.0	55	96	0	202	37	10	10	41	1.74
47367937--47368025	26	3.3	26	67	14	72	35	7	12	43	1.71
47374367--47374630	46	5.7	46	74	15	172	27	18	30	23	1.97
47377315--47377364	24	2.1	24	82	14	59	50	8	8	34	1.61
47377582--47377668	26	3.4	25	79	7	86	60	8	5	25	1.47
47377731--47377788	28	2.1	28	83	6	73	60	6	6	25	1.48
47379308--47379825	88	5.9	87	71	13	333	28	20	17	32	1.96
47379353--47379644	43	6.7	43	72	12	177	28	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47379343--47379965	181	3.5	181	82	6	655	28	21	17	32	1.95
47381643--47381908	47	5.7	47	78	10	144	25	28	17	28	1.97
47381698--47381861	47	3.6	47	87	8	205	27	29	16	26	1.97
47388541--47388567	13	2.1	13	100	0	54	51	0	48	0	1.00
47388939--47389062	46	2.7	46	82	9	128	25	28	17	29	1.98
47389934--47390024	46	2.0	46	86	0	128	29	25	13	31	1.93
47401843--47402167	26	12.8	26	67	14	106	56	6	8	29	1.53
47401801--47402026	101	2.2	102	77	10	230	58	6	8	26	1.52
47410317--47410443	56	2.3	55	83	2	166	27	32	18	21	1.97
47429878--47429987	55	2.0	55	94	0	193	36	10	13	40	1.78
47435808--47435847	19	2.2	18	95	4	71	42	15	2	40	1.60
47439551--47439633	41	2.0	43	88	4	125	45	14	10	28	1.78
47439664--47439703	19	2.2	18	86	4	53	42	10	5	42	1.60
47444192--47444366	58	2.9	60	78	15	193	42	16	17	24	1.89
47444401--47444439	16	2.4	17	86	4	53	15	2	15	66	1.36
47447853--47447899	17	2.8	17	87	6	60	44	14	6	34	1.71
47448981--47449050	28	2.5	28	85	0	86	47	8	8	35	1.65
47455643--47455689	21	2.2	21	96	0	85	17	8	27	46	1.76
47456258--47456291	17	2.0	17	100	0	68	35	11	17	35	1.87
47459217--47459288	35	2.1	34	82	10	83	27	19	22	30	1.98
47462848--47463014	43	3.9	43	75	7	176	31	24	15	28	1.96
47467455--47467603	42	3.5	43	79	9	153	26	24	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47467455--47467603	43	3.5	43	81	6	160	26	24	20	27	1.99
47472262--47472455	45	4.3	45	82	3	196	42	14	20	22	1.88
47472363--47472430	21	3.0	23	64	20	61	41	13	20	25	1.88
47472271--47472436	90	1.8	90	84	5	228	40	15	20	24	1.90
47472262--47472459	90	2.2	90	79	8	226	42	14	20	22	1.88
47473726--47473901	46	3.8	46	79	12	216	21	21	28	28	1.98
47473723--47473893	93	1.8	93	96	0	315	21	21	28	28	1.99
47481231--47481406	46	3.8	46	78	14	209	21	20	28	29	1.98
47481228--47481398	93	1.8	93	94	2	308	21	21	28	28	1.98
47490021--47490054	16	2.2	16	94	5	61	52	11	5	29	1.61
47490021--47490068	16	3.1	15	85	8	60	56	10	8	25	1.61
47494874--47495073	88	2.2	91	82	7	241	34	18	8	39	1.81
47495204--47495283	20	4.2	19	75	18	69	67	1	5	26	1.18
47495466--47495594	27	4.6	28	77	13	115	28	3	1	66	1.16
47495468--47495592	20	6.7	18	71	14	76	28	3	1	67	1.15
47495526--47495565	19	2.0	20	85	4	55	32	0	0	67	0.91
47497365--47497416	24	2.1	26	85	7	72	28	0	25	46	1.53
47498581--47498692	33	3.4	33	81	7	147	43	9	7	39	1.65
47498606--47498722	32	3.6	32	80	6	137	45	8	6	39	1.61
47498581--47498726	65	2.3	65	91	1	240	44	8	6	39	1.62
47511612--47511789	27	6.6	27	84	3	205	29	28	15	26	1.96
47511633--47511788	82	1.9	81	88	3	233	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47519815--47519992	27	6.6	27	84	3	205	29	28	15	26	1.96
47519836--47519991	82	1.9	81	88	3	233	29	28	15	26	1.96
47523377--47523408	16	2.0	16	93	0	55	43	21	25	9	1.82
47523624--47523715	28	3.2	28	75	7	96	30	13	32	23	1.93
47524701--47524734	18	1.9	18	88	5	52	41	11	17	29	1.85
47525666--47525709	15	2.9	15	93	0	70	15	6	40	36	1.74
47529396--47529467	22	3.2	21	65	14	54	20	20	11	47	1.81
47529336--47529657	46	7.0	46	92	0	473	21	23	14	40	1.90
47531740--47531778	16	2.4	16	91	0	60	0	30	0	69	0.89
47531838--47531868	2	16.0	2	93	6	55	48	0	0	51	1.00
47535322--47535596	46	6.0	46	93	0	442	21	23	14	41	1.89
47537625--47537663	16	2.4	16	91	0	60	0	30	0	69	0.89
47542241--47542274	18	1.9	18	88	5	52	41	11	17	29	1.85
47556276--47556302	5	5.4	5	100	0	54	0	18	0	81	0.69
47561593--47561635	20	2.1	21	87	8	63	23	11	6	58	1.57
47563710--47563737	6	4.7	6	100	0	56	35	0	0	64	0.94
47565005--47565058	27	2.0	27	100	0	108	22	25	7	44	1.79
47569965--47570008	11	3.9	11	85	5	61	84	2	13	0	0.73
47569968--47570017	23	2.1	24	88	3	75	78	4	16	2	1.00
47569957--47569998	18	2.3	18	83	4	57	80	2	16	0	0.81
47569958--47570004	19	2.5	18	83	13	51	82	4	12	0	0.80
47574767--47574930	42	3.7	42	85	8	204	28	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47574850--47575020	47	3.6	48	84	7	190	29	26	15	28	1.96
47575042--47575128	31	2.8	31	91	0	138	26	27	19	26	1.99
47575104--47575232	50	2.5	51	89	2	197	25	24	15	34	1.94
47577321--47577888	278	2.0	282	95	2	1029	35	17	9	38	1.82
47580301--47580465	42	3.8	42	80	10	179	29	26	13	30	1.94
47580336--47580566	95	2.5	93	81	8	256	32	25	13	28	1.94
47580387--47580554	47	3.6	47	84	4	196	31	26	13	27	1.94
47580336--47580554	91	2.4	95	82	7	238	31	26	13	29	1.94
47580576--47580662	31	2.8	31	94	0	147	27	29	17	25	1.97
47580638--47580766	50	2.5	51	88	2	188	24	23	17	34	1.96
47586775--47586821	19	2.5	19	86	6	60	27	19	8	44	1.79
47593976--47594059	42	2.0	41	93	2	141	39	13	22	25	1.90
47595538--47595640	44	2.3	45	79	11	113	31	16	21	31	1.95
47595436--47596256	177	4.6	176	86	3	1087	30	17	24	27	1.97
47595724--47595810	44	2.0	45	88	6	133	29	11	28	29	1.92
47595821--47596318	89	5.7	85	69	10	297	30	17	25	26	1.97
47595998--47596333	85	3.9	85	72	8	246	30	18	25	26	1.98
47596586--47596624	14	2.8	14	80	11	53	76	0	0	23	0.78
47602098--47602220	55	2.2	56	88	2	176	26	12	28	33	1.92
47602098--47602220	28	4.4	28	90	2	176	26	12	28	33	1.92
47602123--47602233	28	4.0	27	90	3	116	28	11	26	33	1.91
47604500--47604673	49	3.5	49	84	1	240	25	14	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47604492--47604673	99	1.8	99	91	0	301	25	15	28	30	1.96
47608996--47609044	18	2.8	17	81	6	62	10	22	48	18	1.77
47609438--47609554	40	2.9	40	93	2	191	14	15	34	35	1.88
47618800--47618932	49	2.7	49	80	2	160	23	30	19	27	1.98
47618960--47619089	46	2.8	47	81	3	156	23	26	19	30	1.98
47620414--47620443	12	2.5	12	100	0	60	20	43	23	13	1.86
47629003--47629093	44	2.1	44	87	0	128	29	8	10	50	1.68
47631134--47631255	47	2.6	46	80	11	140	27	22	30	19	1.98
47631127--47631538	46	8.7	47	73	12	174	26	19	30	24	1.98
47631127--47631297	46	3.7	46	81	7	186	26	21	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295