genome.fa.s2.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  120  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41211287--41211328	22	2.0	20	86	9	57	57	0	0	42	0.99
41211418--41211458	12	3.2	13	89	10	66	78	0	21	0	0.76
41211418--41211458	6	6.3	6	86	13	55	78	0	21	0	0.76
41214295--41214361	34	2.0	34	85	5	91	38	16	5	38	1.73
41217589--41217913	161	2.0	161	97	0	614	25	23	7	44	1.78
41220105--41220131	13	2.1	13	100	0	54	25	14	14	44	1.84
41222015--41222077	25	2.5	26	78	14	71	69	7	1	20	1.22
41223591--41223630	3	13.3	3	100	0	80	67	0	0	32	0.91
41224139--41224193	21	2.5	22	76	5	58	54	0	1	43	1.10
41238294--41238318	6	4.2	6	100	0	50	52	16	0	32	1.44
41238312--41238353	22	1.9	22	95	0	75	64	14	4	16	1.45
41239369--41239415	3	15.7	3	90	0	76	36	2	0	61	1.08
41245620--41245680	29	2.0	30	84	6	79	50	8	1	39	1.42
41246373--41246411	14	2.8	14	88	0	51	58	2	2	35	1.25
41251377--41251411	7	5.0	7	100	0	70	28	0	71	0	0.86
41252610--41252640	6	5.3	6	96	3	55	16	0	0	83	0.64
41254548--41254581	17	2.0	17	94	0	59	23	20	20	35	1.96
41261743--41261829	44	2.0	44	93	0	147	41	11	12	34	1.79
41262718--41262782	22	3.0	22	74	14	55	40	24	0	35	1.56
41263572--41263728	43	3.7	43	77	7	158	31	24	19	24	1.98
41263591--41263693	42	2.4	43	85	6	138	33	23	19	24	1.97
41266645--41266681	18	2.1	17	90	5	56	56	2	0	40	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41271083--41271557	48	9.9	48	78	3	490	26	29	17	27	1.97
41271081--41271557	96	5.0	96	89	0	677	26	28	17	27	1.97
41277225--41277341	39	3.0	39	89	0	189	22	29	23	25	1.99
41277986--41278026	21	2.0	21	100	0	82	43	14	2	39	1.59
41285121--41285251	39	3.4	39	90	1	192	23	28	22	25	1.99
41285897--41285936	21	1.9	21	100	0	80	45	10	2	42	1.51
41289928--41290402	48	9.9	48	78	3	490	25	28	17	28	1.98
41289926--41290402	96	5.0	96	88	0	666	25	28	17	28	1.98
41296797--41296855	24	2.5	24	94	2	102	38	0	8	52	1.32
41302844--41302888	8	5.4	8	82	10	54	35	0	0	64	0.94
41302844--41302890	18	2.8	16	81	12	58	36	0	0	63	0.94
41312903--41313241	47	8.1	39	76	15	231	32	24	14	29	1.94
41312948--41313286	47	7.7	47	76	15	348	31	23	14	30	1.94
41312995--41313241	80	3.0	84	89	5	385	31	24	14	29	1.95
41313155--41313288	48	2.8	48	82	3	173	32	22	14	31	1.93
41316946--41317044	28	3.5	29	83	6	114	30	27	15	27	1.96
41324933--41325003	28	2.5	29	88	6	110	29	26	15	28	1.96
41327986--41328030	18	2.6	17	86	6	56	35	0	0	64	0.94
41349681--41349748	25	2.7	25	76	0	73	29	20	23	26	1.99
41353325--41353357	16	2.1	16	100	0	66	30	12	18	39	1.87
41357050--41357119	25	2.8	25	76	6	79	28	24	21	25	1.99
41358520--41358560	21	2.0	21	85	4	57	29	4	7	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41359748--41359851	19	5.0	23	73	20	79	62	0	1	35	1.06
41359756--41359843	32	2.9	32	75	14	87	60	0	2	37	1.10
41359816--41359871	22	2.5	22	83	13	71	60	0	3	35	1.14
41359759--41359879	40	3.1	38	77	14	113	60	0	3	36	1.13
41361573--41361834	133	2.0	133	86	0	371	27	22	13	37	1.91
41362902--41362960	31	1.9	31	89	0	91	23	11	27	37	1.90
41364838--41364944	19	5.8	18	70	18	60	51	3	2	42	1.34
41369414--41369583	49	3.5	48	75	4	162	31	20	24	23	1.98
41369384--41369618	98	2.4	96	81	4	244	31	20	25	22	1.98
41372450--41372555	39	2.6	40	79	7	124	29	12	27	31	1.93
41375137--41375237	23	4.4	23	71	7	89	37	19	18	23	1.94
41378503--41378675	46	3.8	45	74	16	167	23	19	28	28	1.98
41386064--41386236	46	3.8	45	75	15	174	21	19	28	29	1.98
41393456--41393673	40	5.5	40	92	2	334	23	22	27	26	2.00
41400398--41400580	79	2.3	81	84	7	232	24	22	27	25	2.00
41400399--41400582	40	4.6	40	83	9	216	23	22	28	25	2.00
41400451--41400615	79	2.1	79	84	6	210	25	21	27	25	1.99
41411075--41411258	39	4.7	40	81	9	209	25	28	22	23	1.99
41418361--41418544	40	4.6	41	84	8	222	23	22	28	25	1.99
41418361--41418542	79	2.3	80	83	6	219	24	22	28	25	2.00
41418413--41418567	79	2.0	79	84	7	208	25	21	27	25	1.99
41423460--41423676	40	5.5	40	90	3	307	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41429590--41429675	23	3.8	22	80	11	93	36	16	19	27	1.93
41431576--41431683	37	2.9	36	78	16	107	40	2	3	52	1.33
41432630--41432679	24	2.1	24	81	7	57	38	2	6	54	1.37
41435749--41435903	42	3.7	42	83	1	193	28	16	25	30	1.96
41440297--41440389	38	2.4	39	89	3	136	31	19	31	18	1.96
41444914--41445002	27	3.3	26	79	3	88	39	17	20	22	1.92
41445428--41445668	54	4.5	54	79	7	231	32	9	18	40	1.82
41445428--41445691	81	3.2	81	83	3	325	31	8	18	40	1.81
41445427--41445691	27	9.8	28	79	9	187	31	8	18	41	1.81
41446492--41446529	18	2.2	18	85	4	51	42	0	39	18	1.50
41475583--41475765	40	4.6	40	88	3	253	22	23	27	25	2.00
41483711--41483928	40	5.5	40	85	4	266	22	23	28	25	1.99
41487972--41488015	22	2.0	22	95	0	79	34	22	11	31	1.90
41489888--41490063	46	3.8	46	74	12	180	21	22	27	27	1.99
41489885--41490055	93	1.8	93	91	0	279	21	23	28	26	1.99
41492988--41493071	29	2.9	29	82	10	100	10	16	15	57	1.65
41492997--41493075	15	5.4	15	80	10	92	10	17	12	59	1.60
41495463--41495637	46	3.8	46	76	10	185	21	22	28	27	1.99
41495459--41495630	93	1.8	93	92	0	290	22	22	28	26	1.99
41503301--41503333	6	5.5	6	96	0	57	15	3	0	81	0.80
41503301--41503349	18	2.6	18	83	6	53	22	4	0	73	1.00
41511698--41511727	12	2.5	12	88	0	51	56	0	26	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41513158--41513187	8	3.8	8	95	0	51	33	0	0	66	0.92
41517236--41517389	42	3.6	43	78	4	159	25	15	26	31	1.96
41517222--41517389	43	3.9	43	76	9	171	26	14	26	32	1.95
41522962--41523151	40	4.8	40	82	8	219	25	21	26	26	1.99
41522966--41523167	82	2.6	77	82	9	230	23	21	27	27	1.99
41531065--41531273	40	5.3	39	87	4	233	23	21	27	27	1.99
41531064--41531273	78	2.7	80	83	5	257	23	20	27	27	1.99
41533358--41533460	38	2.7	38	83	0	125	23	22	25	29	1.99
41533458--41533569	43	2.6	43	95	0	197	11	27	31	29	1.92
41540135--41540273	43	3.3	43	74	11	142	25	15	29	29	1.96
41540158--41540257	42	2.3	43	79	8	123	29	16	26	29	1.96
41541260--41541334	13	6.3	13	79	18	92	32	6	14	46	1.71
41541260--41541334	25	3.2	25	81	14	113	32	6	14	46	1.71
41543709--41543844	46	2.9	44	81	11	148	29	23	15	31	1.95
41543709--41543843	24	5.8	24	77	12	147	28	23	15	31	1.95
41543715--41543861	46	3.2	45	74	19	124	29	23	16	29	1.96
41549020--41549193	42	4.2	42	87	2	235	25	18	21	33	1.96
41549024--41549153	40	3.2	40	91	4	215	24	20	22	33	1.97
41549020--41549177	82	1.9	82	88	2	235	25	19	21	32	1.97
41556779--41556910	40	3.2	40	87	4	201	25	18	21	33	1.97
41556781--41556936	42	3.7	42	87	3	208	25	19	22	32	1.97
41556781--41556935	82	1.9	80	89	5	211	25	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41558932--41558966	17	2.0	17	88	5	52	14	25	40	20	1.90
41564506--41564832	27	12.1	27	81	4	158	36	22	7	33	1.81
41564530--41564686	54	2.9	54	86	0	242	30	22	7	39	1.82
41564517--41564697	54	3.4	54	81	0	218	33	22	7	37	1.81
41564517--41564715	81	2.5	81	82	0	236	34	21	7	36	1.81
41564665--41564917	54	4.7	55	75	8	196	39	20	7	31	1.82
41564680--41564830	81	1.9	81	83	5	198	43	22	5	28	1.77
41564800--41564894	27	3.4	27	77	11	93	38	17	8	34	1.80
41565760--41565790	16	1.9	16	93	0	53	29	19	16	35	1.93
41565821--41565887	25	2.7	25	90	0	98	29	26	19	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295