genome.fa.s2.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  166  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56799438--56799593	82	1.9	81	88	3	233	26	15	28	29	1.96
56804085--56804241	39	4.1	39	94	1	271	26	24	22	26	2.00
56804085--56804241	77	2.0	78	93	1	271	26	24	22	26	2.00
56812254--56812411	39	4.1	39	95	0	280	25	24	22	26	2.00
56819987--56820092	39	2.7	39	97	0	194	25	23	22	28	1.99
56824887--56825204	47	6.8	45	73	11	212	27	21	29	21	1.98
56824882--56825204	94	3.5	92	77	11	327	27	21	29	21	1.98
56828248--56828455	75	3.0	67	82	12	254	30	22	28	18	1.97
56828301--56828452	75	2.0	75	96	0	277	28	22	32	16	1.96
56828389--56828440	27	2.0	27	84	3	70	34	21	26	17	1.95
56828643--56828705	27	2.3	27	72	0	63	38	22	17	22	1.93
56828687--56828873	27	6.9	27	83	2	223	25	21	17	35	1.95
56828690--56828873	81	2.3	81	89	2	273	25	21	17	35	1.95
56828714--56828874	54	3.0	55	91	3	256	24	20	18	36	1.94
56828690--56828908	81	2.7	81	86	3	264	26	19	17	36	1.94
56834752--56834926	94	1.9	94	82	2	226	27	20	30	21	1.98
56847515--56847548	6	5.7	6	100	0	68	32	0	0	67	0.91
56871457--56871485	14	2.0	15	93	6	51	27	0	20	51	1.47
56872581--56872781	45	4.6	45	84	6	234	23	15	25	35	1.94
56884785--56884841	21	2.5	23	75	18	66	43	0	0	56	0.99
56885022--56885065	16	2.8	16	89	0	61	25	31	0	43	1.55
56885775--56885912	67	2.1	67	90	0	213	36	17	22	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56891800--56891926	46	2.8	46	84	2	148	24	19	22	33	1.97
56891842--56891973	46	2.8	46	79	2	129	28	18	18	33	1.95
56898783--56898882	25	3.8	25	74	17	85	45	13	20	22	1.85
56898782--56898913	31	4.3	30	80	11	142	44	12	21	21	1.85
56898808--56898941	62	2.2	62	91	0	214	45	12	20	20	1.84
56898874--56898941	25	2.7	25	86	0	100	44	13	22	20	1.86
56898761--56898891	6	21.3	6	74	16	108	47	12	18	21	1.82
56898809--56898891	37	2.2	37	77	12	82	48	13	18	20	1.81
56899059--56899151	27	3.5	26	83	5	96	38	20	20	20	1.93
56899107--56899174	27	2.6	27	81	9	77	42	23	19	14	1.88
56899730--56899979	27	9.3	27	81	0	241	25	18	20	36	1.95
56899731--56899979	54	4.6	54	83	1	266	25	18	19	36	1.95
56899768--56900005	81	3.0	80	80	5	259	26	17	18	37	1.93
56899964--56900086	27	4.7	26	77	7	97	28	8	21	40	1.84
56902554--56902587	14	2.4	14	85	0	50	52	0	5	41	1.25
56903887--56903911	13	1.9	13	100	0	50	24	0	20	56	1.43
56909603--56909913	46	6.7	46	76	14	291	22	20	28	29	1.98
56909603--56909913	139	2.2	138	92	1	514	22	20	28	29	1.98
56910786--56911380	294	2.0	294	97	0	1109	37	12	16	33	1.86
56913049--56913178	43	3.0	43	86	0	188	33	30	23	12	1.92
56913146--56913205	27	2.2	27	93	0	102	36	33	21	8	1.84
56913100--56913248	70	2.1	70	92	2	246	34	31	23	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56913170--56913253	43	2.0	43	95	0	150	30	34	25	9	1.88
56918623--56918747	42	3.0	42	94	4	227	31	34	24	10	1.89
56918623--56918739	40	2.9	40	96	2	207	30	35	23	11	1.89
56918714--56918769	26	2.3	26	87	9	82	35	35	19	8	1.83
56918778--56918852	38	1.9	40	91	5	127	25	28	25	21	1.99
56924113--56924457	43	8.1	43	91	2	556	31	33	24	11	1.91
56930201--56930225	13	1.9	13	100	0	50	24	0	20	56	1.43
56943142--56943234	43	2.2	42	84	1	114	26	13	22	36	1.92
56943142--56943295	42	3.6	43	74	8	118	28	14	22	34	1.94
56946077--56946109	11	2.9	12	86	13	52	33	0	0	66	0.92
56946233--56946293	28	2.1	30	87	6	90	57	11	3	27	1.49
56956081--56956118	19	2.0	19	85	10	51	68	0	10	21	1.19
56969724--56969843	43	2.8	42	82	3	134	29	15	24	30	1.96
56971786--56971828	21	2.1	21	91	4	70	30	0	32	37	1.58
56974680--56974742	32	2.0	32	93	6	110	33	25	20	20	1.97
56977736--56977786	25	2.0	25	100	0	102	29	3	23	43	1.72
56981067--56981243	27	6.6	27	83	3	196	27	14	28	29	1.95
56981070--56981222	81	1.9	80	87	4	227	27	14	28	30	1.95
56984031--56984198	40	4.2	40	83	4	106	25	27	23	23	2.00
56984054--56984198	40	3.6	40	85	4	193	23	26	24	25	2.00
56985389--56985463	38	2.0	38	100	0	150	32	24	13	30	1.93
56995365--56995460	40	2.4	41	82	6	117	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57007234--57007264	14	2.3	13	94	5	53	0	0	16	83	0.64
57009399--57009537	69	2.0	69	98	0	269	36	17	26	19	1.94
57023296--57023333	15	2.4	16	86	8	51	44	2	2	50	1.30
57028521--57028618	27	3.5	28	90	2	135	25	14	29	30	1.95
57028549--57028631	27	3.0	27	85	5	87	30	13	25	31	1.93
57028521--57028632	28	4.0	27	83	6	89	27	13	26	32	1.94
57036618--57036714	28	3.5	28	90	4	135	26	13	27	31	1.94
57036646--57036727	27	3.0	27	87	7	96	30	12	24	32	1.92
57047764--57047887	46	2.7	46	84	2	160	28	15	31	25	1.95
57057289--57057397	53	2.1	53	98	0	209	36	19	11	32	1.88
57062358--57062401	22	2.0	22	100	0	88	31	22	13	31	1.93
57067536--57067577	20	2.2	20	87	8	61	33	7	11	47	1.68
57072419--57072530	43	2.6	43	98	0	215	10	26	33	29	1.90
57076361--57076390	12	2.6	12	94	5	53	26	16	26	30	1.97
57080718--57080901	40	4.6	40	83	6	221	26	23	25	24	2.00
57080718--57080901	80	2.3	80	86	3	246	26	23	25	24	2.00
57086708--57086835	29	4.5	28	88	2	175	32	25	12	28	1.92
57086707--57086835	57	2.3	57	87	2	188	32	26	12	28	1.92
57092053--57092236	40	4.6	40	82	2	235	26	24	25	23	2.00
57108257--57108293	17	2.2	17	90	0	56	54	24	0	21	1.45
57110363--57110403	20	2.0	22	85	9	59	46	0	4	48	1.23
57114932--57114982	26	1.9	27	92	4	86	41	19	19	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57121262--57121308	19	2.3	20	82	10	60	36	0	14	48	1.44
57121656--57122001	50	6.9	50	75	6	306	28	18	23	29	1.98
57121658--57121990	101	3.3	101	85	1	400	27	18	23	30	1.98
57122558--57122897	180	1.9	180	87	1	502	39	9	19	31	1.84
57123648--57123735	43	2.0	43	100	0	176	44	11	25	19	1.84
57134418--57134451	15	2.3	15	89	0	50	44	41	2	11	1.56
57137317--57137360	20	2.1	21	83	4	54	6	11	6	75	1.20
57137556--57137824	143	1.9	145	80	6	325	41	12	3	42	1.61
57138811--57138897	22	3.8	24	77	8	83	56	5	6	31	1.49
57138913--57139046	25	5.6	25	72	13	102	55	2	5	36	1.34
57139329--57139367	16	2.4	16	86	0	51	43	28	5	23	1.75
57139513--57139611	30	3.3	30	91	0	162	19	6	48	26	1.72
57139548--57139601	18	3.3	18	66	28	57	20	7	48	24	1.75
57139998--57140056	23	2.5	24	82	17	72	44	1	1	52	1.21
57140015--57140063	26	2.0	26	88	8	75	42	0	2	55	1.11
57140388--57140425	20	1.9	20	88	0	58	34	34	2	28	1.71
57143467--57143508	15	2.7	15	82	14	50	66	0	0	33	0.92
57145506--57145557	17	3.2	16	78	10	61	38	0	1	59	1.08
57145993--57146086	23	4.1	23	84	0	125	47	5	25	21	1.71
57150499--57150592	23	4.1	23	85	0	134	47	4	25	22	1.69
57152097--57152175	32	2.6	30	80	11	97	50	5	8	35	1.56
57152097--57152179	30	2.8	28	76	20	78	49	4	8	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57152732--57152782	26	2.0	26	84	7	68	72	5	17	3	1.20
57158066--57158168	44	2.4	44	81	3	120	31	27	19	22	1.98
57161287--57161351	22	3.0	22	73	8	60	32	24	21	21	1.98
57161770--57161838	27	2.6	27	83	0	84	31	11	20	36	1.88
57161796--57162154	107	3.3	108	78	4	282	30	8	19	41	1.81
57161796--57162162	27	13.7	27	82	4	251	31	8	19	41	1.81
57165465--57165673	52	4.1	51	85	9	284	35	14	22	27	1.93
57165457--57165673	98	2.1	99	86	6	292	35	14	22	27	1.93
57165569--57165784	37	5.3	44	87	9	190	37	14	20	26	1.92
57165637--57165782	37	4.0	37	94	1	251	37	16	21	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295