genome.fa.s2.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  110  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36314173--36314201	14	2.1	14	100	0	58	58	20	6	13	1.58
36320330--36320501	93	1.8	93	91	2	283	28	30	20	20	1.97
36320322--36320497	46	3.8	46	79	5	203	29	30	19	20	1.97
36323899--36324081	40	4.6	40	85	4	221	26	27	22	23	1.99
36323886--36324081	79	2.5	78	78	5	223	26	28	21	23	1.99
36331919--36332043	40	3.2	40	81	10	159	24	28	24	23	1.99
36334102--36334194	29	3.2	29	77	8	91	58	12	16	12	1.64
36334116--36334194	29	2.7	30	82	9	99	55	13	17	12	1.69
36334116--36334185	15	4.7	15	77	10	81	57	11	18	12	1.65
36334118--36334194	15	5.2	15	77	12	79	55	14	16	12	1.69
36335343--36335650	153	2.0	154	98	0	591	34	19	3	42	1.70
36337271--36337445	46	3.8	46	77	15	189	28	28	21	21	1.99
36337278--36337450	93	1.9	93	91	0	283	27	28	21	21	1.99
36337322--36337465	46	3.1	45	70	11	121	28	27	21	22	1.99
36339636--36339735	47	2.1	47	96	0	182	34	14	25	27	1.94
36339720--36339858	55	2.5	55	81	1	172	37	17	22	22	1.94
36344096--36344228	51	2.6	51	84	3	153	25	17	26	30	1.97
36344144--36344281	51	2.7	51	84	1	152	27	16	26	28	1.97
36349070--36349153	26	3.4	25	81	8	91	29	21	20	28	1.98
36349096--36349167	24	3.0	23	83	8	72	29	22	20	27	1.99
36349361--36349451	38	2.7	31	77	22	112	34	16	25	24	1.95
36356929--36356995	20	3.3	20	95	0	125	34	10	20	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36356940--36356995	11	5.5	11	71	16	57	33	10	21	33	1.88
36356931--36356987	9	5.9	9	73	15	51	33	7	22	36	1.81
36356929--36357009	40	2.0	40	88	4	119	34	11	19	34	1.87
36357041--36357126	26	3.4	25	82	10	104	30	20	19	29	1.97
36359372--36359399	14	2.0	14	100	0	56	50	7	14	28	1.69
36360616--36360752	50	2.7	51	82	1	159	24	19	27	27	1.99
36360616--36360798	51	3.6	50	80	0	159	25	16	28	28	1.97
36361824--36361851	14	2.0	14	100	0	56	28	7	7	57	1.52
36366158--36368142	990	2.0	990	100	0	3970	36	17	17	28	1.93
36373943--36374190	54	4.6	54	87	4	331	22	23	17	36	1.95
36374169--36374290	47	2.6	47	90	0	199	27	22	12	37	1.90
36376664--36377023	54	6.6	54	81	4	402	23	23	15	36	1.94
36376664--36377029	109	3.4	108	82	5	411	24	23	15	36	1.94
36376664--36377023	163	2.2	162	90	0	576	23	23	15	36	1.94
36384127--36384234	36	2.9	37	90	2	173	27	29	19	23	1.98
36384380--36384521	50	2.9	49	86	8	198	30	25	7	36	1.84
36384380--36384615	47	4.9	50	81	11	210	28	27	9	34	1.88
36384438--36384679	47	5.1	47	86	3	292	27	28	10	33	1.89
36384579--36384650	22	3.1	22	64	24	58	23	29	13	33	1.93
36388706--36389137	40	10.8	40	90	0	639	26	28	20	24	1.99
36389284--36389352	36	1.9	36	96	0	129	21	11	24	42	1.86
36400214--36400250	8	4.6	8	86	0	56	59	21	16	2	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36400912--36401040	20	6.6	20	85	3	154	15	17	25	41	1.88
36400912--36401055	58	2.4	59	82	4	175	15	18	25	40	1.90
36400908--36401074	78	2.1	80	78	5	178	17	19	22	40	1.92
36401067--36401174	26	4.2	26	74	0	99	22	20	20	37	1.95
36401074--36401174	52	1.9	52	81	0	121	20	20	20	37	1.94
36403750--36403784	17	2.1	17	100	0	70	22	42	11	22	1.85
36404861--36404956	20	4.9	20	76	6	72	13	23	22	39	1.90
36404879--36404958	40	2.0	40	85	4	108	15	25	20	40	1.90
36404883--36404967	20	4.2	20	78	4	82	16	23	20	40	1.91
36404946--36405010	26	2.4	27	82	10	80	15	23	23	38	1.92
36404960--36405043	26	3.2	26	84	0	105	19	20	23	36	1.95
36408407--36408446	21	2.0	20	85	5	53	10	35	22	32	1.87
36409797--36409868	34	2.2	33	82	7	83	33	19	22	25	1.97
36411882--36411921	20	2.0	20	95	0	71	45	22	10	22	1.82
36413070--36413112	3	14.3	3	95	0	77	2	30	0	67	1.03
36415050--36415088	14	2.7	14	85	14	53	41	0	2	56	1.13
36415986--36416029	22	2.0	22	81	0	52	31	25	6	36	1.82
36420645--36420748	33	3.1	33	86	4	120	26	24	22	26	2.00
36420645--36420783	33	4.3	33	77	11	119	28	23	22	25	1.99
36421153--36421269	27	4.3	27	81	0	117	28	16	15	40	1.88
36425372--36425515	27	5.4	27	88	0	182	25	18	18	38	1.93
36432057--36432123	33	2.0	34	85	5	91	25	28	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36446538--36446583	20	2.3	20	96	0	83	13	26	36	23	1.91
36446529--36446583	20	2.7	21	88	5	78	14	30	32	21	1.93
36460546--36460910	48	7.6	48	83	3	270	24	27	19	29	1.98
36460543--36460860	96	3.3	96	82	3	313	23	27	18	29	1.98
36460543--36460910	96	3.8	96	80	3	298	23	27	19	29	1.98
36468650--36468743	27	3.3	27	69	21	75	45	15	17	21	1.85
36471378--36471429	27	2.0	26	84	3	68	34	21	26	17	1.95
36472081--36472199	27	4.4	27	80	4	141	25	20	20	34	1.96
36472080--36472199	54	2.2	54	86	2	170	25	20	20	35	1.96
36476171--36476362	51	3.9	49	79	6	199	27	27	19	26	1.99
36476180--36476366	101	1.9	99	85	4	259	27	28	18	26	1.98
36481470--36481521	27	2.0	26	84	3	68	34	21	26	17	1.95
36482176--36482294	27	4.4	27	85	0	157	25	19	20	35	1.96
36484166--36484237	37	1.9	37	88	0	108	27	30	19	22	1.98
36484443--36484776	47	7.1	47	91	0	506	27	28	11	32	1.92
36484582--36484658	22	3.4	22	67	22	68	28	28	12	29	1.94
36488730--36488768	16	2.4	17	91	4	62	48	35	5	10	1.59
36490131--36490245	29	4.0	28	81	2	122	28	15	27	27	1.96
36492902--36492926	4	6.2	4	100	0	50	48	0	0	52	1.00
36501641--36501758	45	2.6	45	93	2	191	23	25	17	33	1.97
36501733--36501861	50	2.6	49	84	8	156	23	30	19	27	1.98
36501828--36501956	46	2.8	44	79	9	152	24	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36505759--36505813	5	11.0	5	100	0	110	40	0	0	60	0.97
36510202--36510269	33	2.1	33	100	0	136	45	2	5	45	1.42
36526415--36526461	23	2.0	23	92	8	78	44	34	0	21	1.52
36532400--36532659	73	3.6	72	75	3	207	24	22	23	30	1.99
36533811--36534040	114	2.0	113	88	2	336	23	16	11	49	1.78
36535896--36535959	25	2.6	25	87	0	92	26	18	20	34	1.96
36542737--36543037	27	11.2	27	85	2	392	40	19	8	30	1.81
36542737--36543120	27	14.3	27	82	6	379	39	20	8	31	1.83
36543141--36543344	27	7.6	27	87	4	268	34	20	20	24	1.97
36543788--36543848	22	2.8	22	75	9	61	18	19	24	37	1.94
36544011--36544111	27	3.7	27	82	5	96	19	22	19	37	1.94
36544271--36544367	6	15.8	6	71	16	65	21	18	13	46	1.83
36544259--36544383	31	4.1	31	82	3	146	20	17	13	48	1.81
36560742--36560860	50	2.3	52	85	2	161	32	15	14	37	1.87
36562950--36563095	55	2.7	55	81	7	181	26	23	15	34	1.94
36564679--36564726	24	2.0	24	100	0	96	20	8	25	45	1.79
36568540--36568604	28	2.3	27	87	7	94	23	29	15	32	1.95
36568827--36568962	56	2.4	56	97	0	254	16	25	17	40	1.90
36572644--36572691	7	6.6	7	88	7	69	41	41	0	16	1.48
36572644--36572691	22	2.2	22	96	0	87	41	41	0	16	1.48
36572649--36572692	15	3.0	15	86	3	63	43	38	0	18	1.50
36572650--36572697	14	3.4	14	80	11	53	39	43	0	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36573599--36573733	48	2.8	48	75	4	137	21	30	19	28	1.97
36573694--36573878	48	3.9	48	86	0	271	24	25	18	31	1.97
36586994--36587104	34	3.3	34	85	0	150	35	4	21	38	1.74
36587177--36587314	59	2.3	61	80	8	167	33	13	25	28	1.93
36590703--36590924	46	4.8	46	81	7	243	30	27	18	22	1.97
36597017--36597192	46	3.8	46	79	12	207	20	21	28	28	1.98
36597014--36597185	93	1.8	93	94	0	308	20	22	29	27	1.99
36604117--36604292	46	3.8	46	79	12	216	20	21	29	28	1.98
36604114--36604285	93	1.8	93	96	0	317	20	21	29	27	1.98
36605910--36605990	37	2.2	37	97	0	153	24	27	1	46	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295