genome.fa.s2.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  288  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97816437--97816468	5	6.6	5	92	7	57	81	0	0	18	0.70
97816438--97816468	9	3.3	9	95	4	53	80	0	0	19	0.71
97819335--97819373	6	6.5	6	96	0	60	0	61	0	38	0.96
97822593--97822659	34	1.9	35	87	3	100	46	11	8	32	1.72
97822628--97822667	14	2.9	14	88	0	62	45	15	5	35	1.68
97822813--97822869	30	1.9	30	82	7	71	47	3	1	47	1.29
97823323--97823371	26	2.0	26	88	8	75	30	0	6	63	1.19
97823618--97823655	14	2.5	15	87	8	51	44	10	5	39	1.61
97824054--97824108	23	2.6	21	83	13	69	47	3	0	49	1.19
97824054--97824108	21	2.5	21	85	11	67	47	3	0	49	1.19
97824377--97824456	20	4.0	19	82	8	81	53	5	0	41	1.22
97824380--97824422	10	4.3	10	77	11	52	53	4	0	41	1.21
97824402--97824457	27	2.1	27	86	6	78	51	5	0	42	1.24
97825875--97825934	22	2.8	23	76	21	67	63	1	1	33	1.14
97827309--97827355	20	2.6	17	78	15	58	36	0	0	63	0.94
97841252--97841322	36	1.9	37	91	2	117	29	15	0	54	1.41
97844913--97845072	35	4.6	35	89	1	232	31	25	11	30	1.92
97844913--97845072	70	2.3	70	93	2	268	31	25	11	30	1.92
97848198--97848424	96	2.4	97	79	3	253	33	18	20	27	1.96
97848297--97848603	140	2.2	140	79	5	334	32	17	20	28	1.96
97848393--97848753	44	7.9	44	69	13	165	34	17	21	27	1.95
97848438--97848717	96	2.9	96	76	7	259	33	17	21	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97848204--97848699	236	2.1	234	86	3	674	33	17	21	28	1.96
97848473--97848715	93	2.6	94	79	5	251	36	17	20	26	1.94
97848639--97848778	44	3.2	44	86	0	163	32	19	23	24	1.97
97850698--97850757	30	2.0	30	87	3	86	51	10	10	28	1.67
97856869--97856928	10	6.0	10	88	11	88	20	8	1	70	1.22
97856870--97856928	16	3.9	15	75	20	52	18	8	1	71	1.20
97857634--97857667	18	1.9	18	88	5	52	26	11	2	58	1.47
97863300--97863371	5	13.4	5	77	12	54	15	5	1	77	1.01
97863300--97863378	11	7.2	11	72	12	56	16	5	1	77	1.01
97863334--97863383	15	3.5	14	83	10	66	20	2	0	78	0.86
97863334--97863392	28	2.1	28	81	6	66	23	3	1	71	1.11
97864867--97864916	10	5.0	10	81	13	59	22	8	2	68	1.26
97864884--97864928	20	2.3	19	81	7	54	24	4	4	66	1.29
97865633--97865666	18	1.9	18	94	5	61	26	11	5	55	1.58
97866379--97866650	44	6.0	44	79	6	240	30	20	17	31	1.96
97866437--97866618	95	1.9	95	86	0	256	32	18	15	33	1.92
97866391--97866650	139	1.9	139	83	0	340	30	20	17	31	1.95
97867207--97867340	67	2.0	67	92	0	223	37	17	6	38	1.77
97874991--97875070	39	2.1	39	95	0	142	45	21	8	25	1.80
97876096--97876120	12	2.1	12	100	0	50	24	0	8	68	1.16
97877169--97877266	31	3.2	31	79	2	92	45	9	7	37	1.63
97884891--97885122	46	5.0	46	89	1	331	40	14	23	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97891013--97891053	21	1.9	22	85	14	59	34	4	9	51	1.56
97891780--97891818	14	2.9	13	92	7	69	43	2	0	53	1.14
97897692--97897721	11	2.7	11	100	0	60	20	6	26	46	1.75
97903830--97903946	35	3.3	34	78	5	117	16	11	28	43	1.83
97906406--97906490	43	2.0	43	88	0	125	14	21	31	32	1.93
97909820--97909872	20	2.7	20	82	5	63	26	9	20	43	1.82
97911166--97911213	23	2.0	24	88	8	71	27	8	6	58	1.51
97914830--97914868	6	6.5	6	84	0	51	17	25	12	43	1.85
97914824--97914868	18	2.5	18	81	0	54	17	28	13	40	1.88
97914997--97915031	18	1.9	18	88	0	52	40	11	17	31	1.85
97916849--97916906	20	2.9	20	82	5	64	25	6	20	46	1.75
97924157--97924202	14	3.1	15	81	15	51	41	0	2	56	1.11
97924203--97924236	4	8.2	4	93	6	59	70	0	0	29	0.87
97925704--97925733	13	2.2	14	94	5	53	83	6	6	3	0.90
97926887--97926978	44	2.1	44	81	0	103	21	20	23	33	1.97
97937888--97937923	18	2.0	19	89	10	58	11	22	41	25	1.86
97937997--97938037	18	2.3	18	91	4	66	9	21	51	17	1.74
97938978--97939079	27	3.8	27	79	10	102	43	19	7	29	1.79
97938978--97939054	26	2.9	26	81	11	93	42	22	6	28	1.78
97939010--97939140	27	4.9	27	77	9	99	38	22	9	29	1.85
97938974--97939137	54	3.1	54	76	6	172	38	21	8	31	1.84
97939092--97939155	27	2.3	27	78	10	67	45	18	7	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97939132--97939596	27	17.2	27	86	0	552	31	21	6	39	1.80
97939833--97939884	27	2.0	26	84	3	68	17	26	21	34	1.95
97940101--97940179	6	12.8	6	72	15	63	16	17	16	49	1.80
97940104--97940174	25	2.8	25	81	12	76	15	18	18	47	1.82
97940101--97940179	31	2.5	31	89	0	113	16	17	16	49	1.80
97942163--97942259	27	3.7	26	77	10	88	41	23	7	27	1.81
97942187--97942302	27	4.3	28	78	8	98	38	18	8	33	1.82
97942187--97942312	54	2.3	54	80	8	139	38	19	8	32	1.83
97942214--97942312	27	3.6	28	77	9	89	38	19	9	33	1.83
97942309--97942772	27	17.2	27	89	0	586	31	20	6	41	1.77
97943009--97943060	27	2.0	26	84	3	68	17	26	21	34	1.95
97943277--97943363	6	14.3	6	73	19	65	20	17	14	47	1.83
97945407--97945490	43	2.0	43	92	0	141	17	17	28	35	1.93
97947243--97947292	25	2.0	25	96	0	91	24	10	8	58	1.57
97948421--97948494	37	2.0	37	100	0	148	13	10	29	45	1.77
97948672--97948699	6	4.7	6	100	0	56	0	0	14	85	0.59
97948780--97948813	17	2.0	17	88	11	52	2	8	11	76	1.12
97949942--97950378	6	73.2	6	87	2	504	58	0	7	34	1.29
97952864--97953360	251	2.0	256	90	4	801	26	17	26	28	1.98
97958853--97958903	26	2.0	26	96	0	93	11	23	35	29	1.90
97958775--97959141	102	3.6	104	94	2	618	19	20	29	30	1.97
97966540--97966591	26	2.0	26	96	0	95	13	23	34	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97966358--97966726	103	3.6	104	94	1	618	19	20	30	30	1.97
97969488--97969598	27	4.1	27	84	7	145	36	23	22	17	1.94
97969488--97969598	54	2.1	54	89	3	170	36	23	22	17	1.94
97971032--97971098	24	2.8	24	90	0	107	25	40	4	29	1.75
97971505--97971540	18	2.1	18	89	5	56	16	38	27	16	1.90
97978943--97978976	16	2.1	17	88	5	52	17	14	14	52	1.74
97984431--97984542	19	5.7	21	79	13	62	39	16	8	36	1.78
97984431--97984488	22	2.6	22	81	7	64	41	17	5	36	1.72
97984467--97984571	17	5.8	19	89	10	175	36	14	11	38	1.82
97984460--97984571	54	2.1	53	95	5	199	35	15	10	38	1.82
97985424--97985462	16	2.4	17	86	4	53	46	5	0	48	1.24
97988222--97988250	6	4.8	6	100	0	58	51	0	0	48	1.00
97991884--97991951	31	2.2	31	89	2	102	19	8	5	66	1.40
97992523--97992577	22	2.5	22	84	0	74	21	30	23	23	1.99
97994475--97994512	21	1.9	20	84	10	51	39	5	0	55	1.23
97994566--97994626	27	2.3	25	81	13	61	34	1	1	62	1.15
97994586--97994636	21	2.4	22	80	6	61	33	0	1	64	1.05
97994642--97994736	29	3.4	28	75	18	74	34	5	3	56	1.37
97994662--97994738	39	2.0	38	85	9	104	33	3	2	59	1.29
97995903--97995936	16	2.1	17	88	5	52	35	20	5	38	1.77
97995903--97995937	17	2.1	17	88	0	52	37	20	5	37	1.76
98006944--98006973	15	2.0	15	100	0	60	13	20	20	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98006985--98007124	40	3.3	40	64	23	97	28	15	27	28	1.96
98006857--98007060	102	2.0	102	95	0	363	24	15	25	33	1.95
98006959--98007385	87	4.9	87	94	0	728	27	15	25	31	1.96
98007391--98007685	78	3.8	78	93	1	493	32	20	23	24	1.98
98007716--98007884	89	1.9	89	90	2	268	28	13	30	27	1.94
98007625--98007879	134	1.9	136	83	5	338	29	15	29	26	1.96
98007625--98007884	45	5.8	45	77	7	276	29	15	28	26	1.96
98009493--98009531	21	1.9	21	84	5	53	41	5	0	53	1.23
98009604--98009659	3	18.3	3	78	14	53	33	0	1	64	1.04
98009576--98009649	27	2.6	28	83	10	89	33	1	1	63	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295