genome.fa.s2.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  140  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47633904--47633972	16	4.2	16	94	3	120	23	0	37	39	1.55
47633904--47633972	33	2.1	32	94	2	120	23	0	37	39	1.55
47640433--47640515	26	3.2	26	94	1	141	37	25	4	32	1.77
47646029--47646297	46	5.7	48	72	14	143	28	18	28	23	1.98
47645987--47646160	46	3.7	46	78	6	163	29	20	27	22	1.99
47646171--47646349	49	3.7	48	76	10	150	26	20	27	25	1.99
47649743--47649781	15	2.6	15	95	0	69	20	12	17	48	1.80
47650228--47650281	22	2.5	22	90	0	90	29	31	25	12	1.93
47652102--47652154	20	2.7	20	84	0	70	39	26	20	13	1.89
47652123--47652171	20	2.4	20	89	3	71	40	26	18	14	1.89
47654111--47654288	27	6.6	27	83	3	205	26	15	28	29	1.96
47654112--47654267	82	1.9	81	88	3	233	26	15	28	29	1.96
47654108--47654288	82	2.2	81	83	2	229	27	15	27	29	1.96
47663637--47663758	22	5.3	22	62	21	61	25	29	11	33	1.91
47663609--47663954	47	7.3	47	92	2	500	27	30	9	32	1.89
47667114--47667499	48	8.0	48	93	0	610	34	5	27	33	1.80
47667640--47667742	37	2.8	37	95	0	179	24	20	32	23	1.98
47672592--47672640	14	3.5	14	97	0	89	16	24	16	42	1.87
47672937--47672990	27	2.0	27	88	0	81	37	9	14	38	1.79
47680915--47681015	29	3.5	29	90	1	150	29	28	14	26	1.95
47686157--47686213	28	2.0	28	100	0	114	17	22	28	31	1.97
47687355--47687391	12	3.0	13	84	11	51	5	40	0	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47688454--47688501	25	1.9	25	82	0	60	35	20	16	27	1.94
47688549--47688604	11	5.5	11	71	16	57	35	12	19	32	1.89
47688538--47688604	20	3.3	20	93	0	116	34	11	20	32	1.90
47688654--47688772	24	5.0	24	86	5	161	27	21	21	30	1.98
47688966--47689029	31	2.1	31	93	0	110	37	15	23	23	1.93
47692867--47692935	24	2.8	25	77	6	68	31	24	20	23	1.98
47692889--47692957	22	3.0	22	77	8	59	37	20	15	26	1.93
47695276--47695328	27	2.0	27	88	0	79	50	13	3	32	1.59
47700546--47700579	17	2.1	17	88	5	52	44	0	38	17	1.49
47700646--47700749	45	2.3	45	83	3	120	34	19	25	21	1.96
47705052--47705304	43	5.9	43	82	5	296	27	16	24	32	1.96
47705095--47705381	129	2.2	129	96	0	529	28	16	24	29	1.97
47705055--47705381	43	7.6	43	80	4	293	28	16	24	30	1.96
47709151--47709206	27	2.0	29	86	10	82	28	1	21	48	1.60
47709693--47709891	42	4.8	42	91	2	271	24	14	28	33	1.94
47716195--47716244	24	2.1	24	100	0	100	30	32	4	34	1.76
47722399--47722509	38	2.9	38	84	2	114	24	20	24	30	1.99
47730009--47730118	38	2.8	38	84	5	105	22	18	26	32	1.97
47730027--47730130	38	2.7	38	84	3	118	19	18	25	36	1.94
47732467--47732501	16	2.2	16	90	10	54	51	2	17	28	1.59
47741070--47741244	49	3.5	49	82	3	233	30	25	17	26	1.97
47741057--47741251	49	3.9	49	81	2	228	29	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47741057--47741249	100	1.9	100	94	0	341	30	25	17	26	1.97
47744578--47744604	12	2.2	12	100	0	54	51	7	0	40	1.30
47745053--47745177	27	4.5	28	90	2	173	28	12	27	32	1.93
47745081--47745190	54	2.0	55	87	5	161	30	11	24	32	1.91
47752906--47752950	23	2.0	23	95	0	81	35	15	2	46	1.58
47754703--47754817	29	4.0	29	82	6	128	27	30	14	26	1.95
47758759--47758871	27	4.2	26	84	8	136	17	23	22	36	1.95
47758759--47758871	55	2.1	54	86	5	156	17	23	22	36	1.95
47766614--47766725	27	4.1	26	86	8	134	17	22	23	36	1.95
47766614--47766725	55	2.1	54	86	5	154	17	22	23	36	1.95
47768831--47768882	16	3.4	16	79	10	56	69	3	26	0	1.06
47774935--47775117	79	2.3	81	83	7	223	24	22	27	24	2.00
47774936--47775119	40	4.6	40	82	9	207	24	22	28	24	2.00
47774988--47775152	79	2.1	79	83	6	201	26	21	27	24	1.99
47776876--47776917	22	1.9	22	90	0	66	45	2	7	45	1.44
47779956--47780121	90	1.8	90	85	2	235	27	26	19	27	1.99
47779995--47780153	42	3.6	42	76	5	138	28	26	16	27	1.97
47780129--47780254	48	2.6	49	80	7	116	27	25	18	28	1.98
47780174--47780303	48	2.7	49	87	2	174	27	26	17	27	1.98
47781171--47781310	67	2.1	67	84	2	181	31	22	27	17	1.97
47787535--47787563	9	3.2	9	100	0	58	48	20	10	20	1.79
47795010--47795066	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47795006--47795064	30	2.0	28	93	6	100	32	0	11	55	1.36
47795450--47795545	21	4.5	21	86	2	120	13	21	27	37	1.91
47795707--47795747	19	2.2	19	87	12	59	46	0	24	29	1.53
47798628--47798843	47	4.7	45	73	14	126	27	19	29	23	1.98
47798642--47798747	46	2.4	41	83	12	115	25	22	31	20	1.98
47801694--47801818	45	2.8	45	86	4	155	34	27	16	22	1.95
47804021--47804117	27	3.6	27	88	4	126	37	28	13	20	1.91
47806337--47806446	53	2.1	53	96	0	202	23	20	12	43	1.86
47812244--47812322	37	2.1	37	88	4	115	25	30	18	25	1.98
47812441--47812608	47	3.6	47	89	0	246	27	31	8	32	1.87
47812833--47813014	40	4.6	40	82	6	210	25	27	21	25	1.99
47812833--47813014	79	2.3	81	82	7	212	25	27	21	25	1.99
47816616--47816688	38	1.9	38	91	0	119	27	27	23	21	1.99
47829150--47829218	33	2.1	33	100	0	138	27	17	18	36	1.94
47829438--47829502	27	2.4	27	82	2	87	36	20	20	23	1.95
47829603--47829656	27	2.0	28	85	7	76	31	18	20	29	1.96
47832985--47833205	80	2.8	80	80	7	202	27	27	20	24	1.99
47833025--47833205	80	2.3	80	83	9	219	27	27	20	23	1.99
47833022--47833205	40	4.6	40	81	7	196	28	27	20	23	1.99
47840829--47840930	43	2.4	43	80	8	111	29	19	20	30	1.97
47842478--47842507	15	1.9	16	93	6	53	46	0	16	36	1.47
47846288--47846335	8	6.4	8	77	18	50	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47846289--47846335	21	2.2	21	88	0	67	42	2	0	55	1.12
47848606--47848765	40	4.0	40	85	4	189	21	21	26	30	1.98
47853808--47853937	46	2.8	46	80	4	154	29	30	20	20	1.98
47853813--47853956	46	3.1	45	72	15	123	29	29	20	20	1.98
47862918--47863055	47	2.9	48	78	13	162	25	19	26	28	1.99
47862916--47863085	93	1.8	92	88	1	259	22	20	27	28	1.99
47869995--47870180	40	4.7	40	88	2	259	25	20	26	26	1.99
47871334--47871374	17	2.4	17	95	0	73	26	19	14	39	1.90
47877743--47877781	13	2.9	13	92	3	60	69	2	0	28	1.02
47877988--47878030	21	2.0	21	86	0	59	25	0	30	44	1.55
47882307--47882372	30	2.2	29	92	7	107	22	18	24	34	1.96
47889543--47889604	30	2.1	29	91	8	99	24	17	22	35	1.95
47891876--47891984	43	2.5	42	85	5	155	22	37	21	18	1.94
47895865--47895894	16	1.9	15	93	6	51	33	23	0	43	1.54
47896106--47896235	50	2.6	49	92	1	206	31	26	16	24	1.97
47897667--47897743	28	2.8	28	82	4	84	37	19	24	18	1.94
47898964--47899011	18	2.8	16	79	17	51	62	0	31	6	1.20
47899862--47899892	12	2.6	12	94	0	53	70	3	0	25	1.02
47907761--47907895	60	2.2	60	80	6	148	24	27	21	26	1.99
47908988--47909326	47	7.2	47	92	0	525	25	28	11	35	1.91
47909252--47909326	23	3.1	25	62	30	63	28	28	8	36	1.85
47909253--47909324	22	3.1	22	66	30	60	27	27	8	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47920249--47920286	14	2.9	13	81	11	51	57	10	13	18	1.63
47922924--47923135	46	4.6	46	78	9	184	26	18	29	25	1.98
47924222--47924304	31	2.7	31	96	3	152	27	26	16	28	1.97
47924524--47924593	25	2.8	25	97	0	131	25	21	24	28	1.99
47925405--47925479	27	2.8	27	76	11	73	22	20	20	37	1.94
47925498--47925551	27	2.0	27	81	0	63	37	14	14	33	1.88
47925508--47925604	27	3.6	27	76	8	88	31	9	18	40	1.82
47925570--47925726	27	5.8	27	77	6	133	29	8	19	42	1.80
47925505--47925640	55	2.5	54	79	2	146	31	8	18	41	1.81
47925725--47925816	27	3.4	27	90	0	139	42	7	21	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295