genome.fa.s2.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  38  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10717367--10717629	133	2.0	133	88	3	395	27	18	25	28	1.98
10717860--10718092	44	5.2	44	72	9	157	32	16	23	27	1.96
10717674--10718079	137	3.0	135	84	4	469	30	18	23	27	1.98
10717947--10718342	177	2.2	177	81	4	467	31	17	22	27	1.97
10720824--10720874	26	2.0	24	82	14	59	33	7	21	37	1.82
10723141--10723170	14	2.1	14	93	0	51	46	36	0	16	1.47
10728280--10728322	13	2.9	16	77	22	58	79	0	16	4	0.90
10728273--10728316	16	2.9	14	78	15	52	79	0	13	6	0.92
10728265--10728326	31	2.0	30	87	6	88	79	0	12	8	0.94
10729385--10729416	16	1.9	17	93	6	57	62	9	9	18	1.52
10729442--10729649	64	3.2	64	92	0	353	30	17	14	37	1.90
10729968--10730194	44	5.1	44	68	19	123	27	16	26	29	1.97
10729922--10730184	133	2.0	133	88	3	395	27	18	25	28	1.98
10730416--10730648	44	5.2	44	71	9	166	32	16	24	27	1.96
10730229--10730635	137	3.0	135	84	4	471	29	18	24	27	1.98
10730503--10730898	177	2.2	177	82	4	476	31	18	22	27	1.97
10731450--10731492	20	2.0	22	86	8	63	13	6	11	67	1.41
10733379--10733430	26	2.1	24	82	13	61	32	7	21	38	1.82
10734694--10734726	11	2.8	12	86	13	50	51	33	3	12	1.54
10736001--10736051	24	2.0	26	85	7	70	37	3	1	56	1.29
10736179--10736281	26	4.2	24	78	15	104	28	3	6	61	1.39
10737965--10738065	28	3.6	28	86	0	121	58	8	12	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10738949--10739000	12	4.3	12	78	9	61	26	9	0	63	1.25
10739466--10739523	30	2.0	29	86	10	82	60	1	1	36	1.17
10740389--10740445	28	2.0	28	96	0	105	28	10	19	42	1.84
10744290--10744350	30	2.0	31	84	9	81	29	24	6	39	1.80
10747351--10747578	46	5.0	46	85	3	280	39	15	24	21	1.92
10751985--10752470	244	2.0	243	86	2	670	27	23	15	34	1.94
10757813--10757853	21	2.0	21	90	0	64	29	26	17	26	1.97
10763048--10763081	15	2.3	15	89	0	50	32	14	11	41	1.82
10768350--10768435	33	2.8	30	74	12	84	23	9	45	22	1.81
10768350--10768435	30	2.7	32	70	12	79	23	9	45	22	1.81
10768413--10768982	51	11.6	48	78	15	462	14	6	48	30	1.68
10768537--10768672	48	3.0	42	75	19	119	15	5	47	31	1.69
10768425--10768983	99	5.7	99	79	12	621	15	6	47	30	1.69
10770387--10770468	42	1.9	44	87	9	125	53	2	2	41	1.27
10772142--10772183	21	2.0	21	90	0	66	19	23	9	47	1.78
10775841--10775912	36	2.0	36	100	0	144	30	19	8	41	1.81
10782557--10782583	13	2.1	13	100	0	54	14	14	7	62	1.51
10789077--10789115	17	2.3	17	86	0	51	35	30	15	17	1.91
10798225--10798258	18	1.9	18	94	5	61	52	5	11	29	1.61
10803335--10803412	38	2.0	39	92	2	131	48	10	17	23	1.78
10805823--10805910	20	4.3	20	72	7	61	45	19	22	12	1.84
10807186--10807210	11	2.3	11	100	0	50	72	8	0	20	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10808750--10808814	31	2.1	32	82	2	78	40	1	1	56	1.18
10815495--10815533	19	2.0	20	85	5	53	56	0	5	38	1.22
10815535--10815573	17	2.3	17	90	0	60	48	2	2	46	1.29
10815617--10815667	9	5.7	9	76	4	50	58	3	0	37	1.16
10815686--10815738	11	5.2	11	82	15	69	39	0	0	60	0.97
10815686--10815749	18	3.3	19	79	16	78	40	0	0	59	0.97
10815705--10815765	9	6.3	10	79	9	65	37	0	1	60	1.07
10815704--10815769	10	7.2	9	74	16	55	40	0	1	57	1.08
10815678--10815774	37	2.5	40	90	6	148	41	0	1	57	1.05
10815607--10815872	18	13.4	18	65	24	67	48	3	0	47	1.24
10815979--10816019	17	2.4	17	91	0	64	43	2	2	51	1.28
10815987--10816023	17	2.2	17	90	0	56	51	2	0	45	1.15
10815986--10816065	42	1.9	42	85	10	110	47	3	1	47	1.28
10818656--10819399	102	7.2	99	74	14	571	13	6	48	31	1.68
10818701--10818798	45	2.3	40	77	13	108	9	7	55	28	1.58
10818656--10819374	51	15.1	45	74	18	470	13	6	49	31	1.66
10819045--10819113	36	1.9	36	90	0	111	20	7	43	28	1.78
10818998--10819348	87	3.9	87	82	10	404	15	6	47	30	1.70
10819132--10819201	36	1.9	36	91	0	113	21	7	42	28	1.79
10819171--10819262	45	2.2	41	78	14	107	11	5	51	31	1.61
10819172--10819399	51	4.6	51	86	6	315	14	5	48	31	1.67
10822094--10822132	12	3.2	12	85	7	51	79	0	17	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10822093--10822129	18	2.0	19	94	5	67	81	0	16	2	0.81
10825490--10825738	50	4.8	50	86	4	293	20	29	23	26	1.99
10825489--10825738	100	2.4	104	87	6	348	21	29	23	26	1.99
10826063--10826120	30	1.9	30	89	0	89	31	24	3	41	1.71
10828643--10828692	24	2.1	23	82	14	57	32	10	6	52	1.59
10833622--10833729	26	4.2	26	93	0	189	36	24	7	32	1.83
10840705--10840811	26	4.2	26	87	1	153	36	21	7	34	1.82
10840705--10840811	52	2.1	52	92	1	180	36	21	7	34	1.82
10842552--10842795	122	2.0	122	93	0	416	42	11	21	25	1.86
10843941--10843966	13	2.0	13	100	0	52	15	15	0	69	1.20
10846615--10846686	36	2.0	36	97	0	135	40	19	9	30	1.84
10846735--10846780	24	2.0	24	86	4	67	28	2	2	67	1.14
10846843--10846944	39	2.6	39	75	7	98	29	2	2	64	1.22
10856935--10856969	17	2.1	17	88	0	52	31	5	20	42	1.75
10857608--10857870	140	1.9	140	87	1	393	27	19	20	31	1.97
10857938--10857988	16	3.3	16	70	29	56	29	3	25	41	1.73
10858684--10858717	9	3.8	9	84	0	50	76	0	23	0	0.79
10860952--10861111	35	4.6	35	85	0	203	24	21	15	38	1.92
10862898--10862941	3	14.7	3	100	0	88	65	0	0	34	0.93
10866684--10866887	101	2.0	101	91	1	329	30	13	19	36	1.90
10869513--10869572	16	3.8	16	74	14	54	63	0	1	35	1.05
10871842--10871898	25	2.2	26	87	3	80	56	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878314--10878357	21	2.1	21	100	0	88	34	13	27	25	1.93
10891218--10891304	45	2.0	45	90	4	142	42	9	12	35	1.75
10892796--10892865	35	2.1	35	91	5	117	50	5	4	40	1.46
10897248--10897288	19	2.1	20	86	4	57	31	9	2	56	1.45
10899899--10899956	29	2.0	30	82	3	73	25	24	3	46	1.68
10911800--10911824	7	3.6	7	100	0	50	64	0	12	24	1.27
10918855--10918885	15	2.1	15	100	0	62	19	38	22	19	1.93
10921653--10921711	29	2.0	29	96	0	109	20	18	6	54	1.66
10921882--10921992	43	2.6	43	92	0	177	34	29	13	22	1.92
10933274--10933304	16	1.9	16	93	0	53	22	19	9	48	1.78
10938835--10938872	19	2.0	20	84	5	51	31	18	2	47	1.62
10946778--10947237	44	10.5	44	76	5	369	31	18	21	28	1.97
10946778--10947201	89	4.8	89	79	4	398	32	18	21	27	1.97
10946784--10947201	133	3.2	130	78	6	398	31	18	21	27	1.97
10949808--10949885	33	2.3	33	95	2	138	41	11	6	41	1.67
10952492--10952931	229	1.9	229	98	0	844	36	14	17	31	1.90
10964947--10965205	47	5.6	45	76	12	213	28	19	27	23	1.98
10964946--10965205	94	2.8	93	83	9	300	28	19	27	23	1.98
10964947--10965205	140	1.9	140	86	6	382	28	19	27	23	1.98
10966306--10966344	21	1.9	21	89	5	62	12	33	30	23	1.92
10975120--10975149	15	2.0	15	93	0	51	23	0	0	76	0.78
10982975--10983030	28	2.0	27	83	10	69	60	0	8	30	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11006328--11006352	10	2.5	10	100	0	50	44	0	0	56	0.99
11011128--11011170	10	4.3	10	85	11	52	67	2	6	23	1.27
11013119--11013183	12	5.2	13	80	14	75	75	0	1	23	0.89
11013120--11013178	3	19.7	3	80	13	59	74	0	1	23	0.91
11013117--11013186	6	11.0	6	77	17	61	75	0	1	22	0.88
11016906--11016965	10	6.0	10	79	11	52	63	1	10	25	1.35
11017919--11018003	42	2.0	42	100	0	170	20	18	23	37	1.94
11020013--11020052	16	2.5	16	87	0	62	50	12	27	10	1.72
11022104--11022149	25	1.9	23	82	8	56	58	8	6	26	1.52
11022839--11022897	29	2.0	29	100	0	118	32	13	10	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295