genome.fa.s2.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  165  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56382314--56382363	24	2.1	24	88	0	73	52	2	2	44	1.24
56388133--56388244	27	4.2	26	84	5	125	37	23	23	16	1.93
56395994--56396087	27	3.5	26	81	8	116	41	22	22	13	1.89
56404560--56404591	12	2.7	12	90	0	55	0	37	28	34	1.57
56416777--56416902	43	3.0	43	77	5	148	25	14	24	35	1.93
56420281--56420333	26	2.0	26	100	0	106	47	11	11	30	1.74
56423626--56423950	181	1.8	179	84	6	442	32	20	9	37	1.85
56424493--56424982	50	9.7	50	73	5	378	31	25	17	25	1.97
56424496--56424886	151	2.6	151	91	2	608	31	26	17	25	1.97
56424499--56424987	101	4.9	101	76	5	402	31	25	17	24	1.97
56424496--56424982	151	3.2	147	81	12	460	31	25	17	25	1.97
56427938--56427997	15	4.1	14	80	8	66	55	13	16	15	1.70
56433271--56433346	38	2.0	38	100	0	152	31	13	23	31	1.93
56434533--56434677	40	3.6	40	85	4	193	25	24	26	23	2.00
56442543--56442687	40	3.6	40	85	4	193	25	24	26	23	2.00
56459996--56460143	43	3.4	44	81	9	146	24	20	29	25	1.99
56460032--56460161	43	3.1	42	83	5	163	26	18	30	25	1.98
56472707--56472826	56	2.1	56	98	0	231	45	9	23	22	1.81
56474249--56474433	40	4.6	39	83	5	196	24	22	27	24	2.00
56474249--56474433	79	2.3	81	84	7	227	24	22	27	24	2.00
56474302--56474466	79	2.1	79	84	6	210	26	21	27	24	1.99
56480892--56481010	56	2.1	56	95	1	213	46	8	22	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56482427--56482613	40	4.6	41	82	9	190	25	22	27	25	2.00
56482427--56482613	79	2.3	82	82	9	215	25	22	27	25	2.00
56485365--56485469	44	2.5	42	81	6	122	23	16	26	33	1.96
56488609--56488726	27	4.4	27	77	3	82	29	12	24	33	1.92
56488667--56488726	26	2.3	26	85	0	75	26	13	26	33	1.93
56492003--56492050	20	2.3	21	92	3	80	35	10	18	35	1.85
56492098--56492192	25	3.8	25	94	4	165	27	26	21	25	1.99
56492097--56492205	25	4.4	24	89	6	139	29	24	21	24	1.99
56492439--56492503	31	2.1	32	88	5	98	29	13	26	30	1.94
56507649--56507824	46	3.8	45	78	10	194	21	20	28	29	1.98
56507645--56507816	93	1.8	93	92	0	290	20	20	29	28	1.98
56510755--56510823	15	4.6	15	83	0	84	11	17	13	57	1.64
56510746--56510833	30	3.0	30	81	8	99	10	17	15	56	1.66
56513226--56513401	46	3.8	46	72	15	155	20	18	28	32	1.96
56513222--56513392	93	1.8	93	87	0	252	20	18	29	31	1.96
56523326--56523409	44	1.9	44	87	4	125	20	19	28	32	1.96
56530619--56530956	27	12.6	27	85	0	435	36	18	18	26	1.94
56530603--56530985	27	14.3	27	83	1	423	36	18	18	26	1.94
56531332--56531390	22	2.7	22	83	0	73	20	27	22	30	1.98
56531548--56531655	27	4.0	26	83	5	117	20	23	20	36	1.95
56531549--56531654	54	2.0	53	83	5	133	20	23	18	36	1.95
56538346--56538371	12	2.2	12	100	0	52	15	15	34	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56539471--56539568	40	2.5	40	91	5	171	31	26	19	22	1.98
56547934--56548002	26	2.7	26	100	0	138	24	30	23	21	1.99
56551809--56552166	29	12.6	28	73	12	241	39	10	26	23	1.87
56551804--56551902	51	1.9	51	87	0	144	40	11	25	23	1.87
56551879--56552143	90	3.0	89	77	8	261	39	11	26	23	1.88
56551809--56552168	148	2.5	144	83	8	432	39	10	26	23	1.87
56551969--56552206	85	2.8	85	80	9	227	38	11	24	24	1.89
56551857--56552204	29	12.0	29	74	12	198	39	11	25	24	1.88
56555081--56555116	18	2.1	18	89	5	56	33	25	0	41	1.55
56563584--56563608	12	2.1	12	100	0	50	52	24	0	24	1.48
56564133--56564290	39	4.1	39	90	0	244	27	23	21	27	1.99
56567405--56567554	37	4.1	37	95	0	255	23	19	30	26	1.98
56576262--56576419	39	4.1	39	86	0	217	25	24	22	27	2.00
56578750--56578907	39	4.1	39	94	1	255	23	29	25	20	1.99
56585479--56585560	39	2.1	39	93	0	137	23	32	21	21	1.98
56592073--56592193	39	3.1	39	91	0	197	23	32	23	20	1.98
56597571--56597704	38	3.5	39	74	11	98	29	26	19	23	1.98
56598329--56598364	18	2.1	18	89	5	56	33	25	0	41	1.55
56600852--56600964	40	2.8	40	91	0	163	27	24	24	23	2.00
56605599--56605634	17	2.1	17	94	0	63	22	44	8	25	1.80
56605946--56605986	15	2.7	15	88	0	55	4	39	2	53	1.35
56613272--56613422	27	5.6	27	80	3	97	27	29	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56621114--56621263	27	5.5	27	78	4	122	27	29	16	26	1.97
56626865--56626919	15	3.8	15	68	18	53	21	23	1	52	1.56
56628031--56628130	48	2.1	48	96	0	182	18	15	27	40	1.89
56628678--56628741	28	2.3	28	94	0	110	18	15	37	28	1.92
56629058--56630032	53	18.3	52	83	5	948	39	19	9	31	1.84
56629058--56630032	133	7.3	132	84	5	1055	39	19	9	31	1.84
56629058--56630032	186	5.2	184	85	7	1029	39	19	9	31	1.84
56629058--56630032	27	36.7	27	81	7	1059	39	19	9	31	1.84
56629984--56630075	27	3.4	27	87	3	114	36	16	17	29	1.92
56629851--56630077	53	4.2	54	80	9	162	38	18	12	29	1.88
56638468--56638572	46	2.3	46	85	5	131	24	32	17	25	1.97
56641059--56641131	29	2.5	29	86	4	94	26	30	16	27	1.97
56648977--56649027	27	1.9	26	84	4	66	19	27	17	35	1.94
56649067--56649126	27	2.3	27	85	2	77	21	23	20	35	1.96
56650572--56650763	40	4.8	40	80	9	212	25	28	21	25	1.99
56650556--56650764	79	2.6	79	82	8	246	25	27	21	25	1.99
56656303--56656468	39	4.2	40	78	6	117	24	28	23	23	2.00
56656326--56656468	40	3.6	40	83	8	168	23	27	24	25	2.00
56657644--56657719	38	2.0	38	94	0	134	34	21	13	31	1.91
56660264--56660428	43	3.9	43	83	4	174	24	20	30	24	1.98
56673696--56673800	27	3.9	28	79	9	119	38	20	23	17	1.93
56676348--56676378	16	1.9	16	93	0	53	25	12	25	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56684088--56684128	21	2.0	20	95	4	73	48	24	0	26	1.51
56687132--56687172	21	2.0	20	95	4	73	48	24	0	26	1.51
56688629--56688957	163	2.0	164	92	0	552	40	18	11	30	1.85
56690023--56690055	16	2.0	17	94	5	59	36	18	3	42	1.66
56690169--56690425	54	4.8	54	84	3	293	22	22	16	37	1.94
56690398--56690519	47	2.6	47	92	0	199	27	22	13	37	1.91
56692296--56692450	43	3.7	43	70	14	133	25	17	27	30	1.97
56693946--56693978	14	2.3	14	94	5	57	0	27	0	72	0.85
56703098--56703187	34	2.6	34	85	7	119	31	21	25	22	1.98
56705278--56705448	46	3.7	46	80	12	133	28	20	29	21	1.98
56708733--56708808	38	2.0	38	100	0	152	31	13	23	31	1.93
56709995--56710135	40	3.6	39	80	12	164	25	24	26	23	2.00
56716757--56716831	38	2.0	38	97	2	143	30	13	24	32	1.93
56716762--56716840	38	2.1	37	88	4	115	29	12	26	31	1.93
56718032--56718091	29	2.1	29	90	3	95	23	25	25	26	2.00
56718061--56718148	40	2.2	40	89	0	131	25	25	27	22	2.00
56727975--56728069	38	2.5	38	84	0	127	34	28	21	15	1.94
56728822--56728846	10	2.5	10	100	0	50	24	0	8	68	1.16
56730941--56730976	16	2.2	16	90	0	54	11	27	13	47	1.77
56739335--56739401	29	2.3	29	85	7	84	28	29	13	28	1.94
56740290--56740386	47	2.0	48	98	2	187	49	4	27	18	1.66
56744072--56744216	43	3.4	43	76	10	136	31	28	17	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56750673--56750778	53	2.0	53	100	0	212	26	33	20	18	1.96
56751869--56751997	44	3.0	42	84	6	127	34	24	16	24	1.95
56751914--56751997	44	1.9	44	95	0	150	34	26	15	23	1.95
56757377--56757637	40	6.6	41	89	7	380	25	27	22	25	2.00
56765529--56765795	40	6.7	40	89	1	403	26	26	21	25	1.99
56765496--56765795	120	2.5	119	88	3	428	26	26	21	26	1.99
56772279--56772336	30	1.9	30	92	0	98	31	12	25	31	1.92
56776863--56776956	47	2.0	47	97	0	179	39	6	24	29	1.80
56781118--56781168	19	2.6	19	87	3	75	25	13	27	33	1.94
56799437--56799610	27	6.4	27	83	4	197	27	14	27	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295