genome.fa.s2.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  12  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3722469--3722510	21	2.0	21	100	0	84	38	9	0	52	1.34
3722819--3722916	7	13.4	7	72	12	63	25	1	24	48	1.57
3722834--3722927	46	2.0	46	93	0	161	28	2	24	44	1.65
3723009--3723075	7	9.3	7	75	12	64	19	0	41	38	1.51
3722992--3723036	22	2.1	21	83	4	54	15	0	42	42	1.47
3722954--3723075	14	8.6	14	68	13	70	20	0	40	39	1.53
3722954--3723075	21	5.7	21	71	13	70	20	0	40	39	1.53
3724228--3724291	25	2.6	25	95	5	112	20	34	12	32	1.90
3728955--3729225	43	6.3	43	87	2	357	28	30	18	22	1.97
3729499--3729589	43	2.1	43	86	6	123	45	9	9	35	1.71
3733231--3733258	6	4.7	6	100	0	56	85	14	0	0	0.59
3733349--3733375	13	2.1	13	100	0	54	29	7	7	55	1.55
3733818--3733882	21	3.1	21	84	0	76	33	40	0	26	1.56
3733844--3733882	7	5.6	7	81	0	51	33	46	0	20	1.51
3734120--3734311	40	4.8	40	89	6	257	37	1	0	61	1.03
3734151--3734253	10	10.3	10	75	8	66	33	0	0	66	0.92
3734151--3734253	11	10.3	11	78	15	64	33	0	0	66	0.92
3734162--3734230	29	2.4	28	78	9	75	39	0	0	60	0.97
3734222--3734277	28	2.0	28	85	0	76	39	0	0	60	0.97
3734171--3734302	11	12.8	11	74	14	104	39	0	0	60	0.97
3734691--3734760	21	3.3	20	78	9	68	32	41	0	25	1.56
3734722--3734760	7	5.6	7	81	0	51	33	46	0	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734982--3735010	15	2.0	15	93	6	51	34	37	0	27	1.57
3735433--3735552	40	3.0	41	88	2	197	27	30	24	18	1.98
3735588--3735720	39	3.4	39	86	7	173	21	21	21	36	1.96
3746037--3746062	13	2.0	13	100	0	52	38	23	0	38	1.55
3749253--3749313	23	2.5	22	82	15	68	47	11	1	39	1.50
3758297--3758331	18	1.9	18	100	0	70	37	28	22	11	1.89
3759830--3759936	10	11.8	9	71	19	64	60	1	0	36	1.14
3759872--3759935	28	2.3	27	86	7	92	65	1	1	31	1.11
3759866--3759942	29	2.7	29	83	2	102	62	2	1	33	1.17
3776749--3776780	6	5.3	6	92	0	55	0	12	0	87	0.54
3776746--3776780	18	1.9	18	100	0	70	0	11	0	88	0.51
3777816--3777866	16	3.2	16	75	8	50	78	0	9	11	0.97
3777835--3777879	23	1.9	24	90	4	74	80	0	4	15	0.87
3778529--3778580	12	4.4	12	76	11	54	36	5	0	57	1.23
3778704--3778786	23	3.5	24	73	15	75	32	7	3	56	1.44
3779415--3779502	25	3.4	25	70	16	63	32	7	4	54	1.50
3780952--3781018	20	3.3	21	81	10	68	55	7	0	37	1.28
3780983--3781034	21	2.5	21	80	0	59	61	5	3	28	1.37
3781560--3781593	16	2.2	16	89	5	52	61	0	5	32	1.20
3781677--3781709	12	2.7	13	90	9	52	63	0	0	36	0.95
3781806--3781863	3	19.0	3	96	3	107	65	1	0	32	1.03
3785450--3785507	25	2.3	25	81	3	62	27	5	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3789537--3789596	30	2.0	30	83	6	77	38	8	25	28	1.84
3790018--3790179	46	3.7	41	80	16	173	20	20	29	29	1.98
3790016--3790133	41	2.7	43	87	12	179	22	19	28	29	1.98
3798017--3798076	30	2.0	30	83	0	75	31	25	5	38	1.77
3805051--3805222	47	3.7	47	82	7	208	30	27	19	22	1.98
3805654--3805691	5	7.4	5	96	3	67	42	0	0	57	0.98
3806962--3807018	15	3.9	15	88	2	89	35	0	12	52	1.39
3807390--3807476	21	4.0	23	80	10	101	16	21	24	37	1.93
3808914--3808973	30	2.0	30	86	0	84	31	23	8	36	1.84
3811981--3812098	60	2.0	60	94	0	209	37	6	10	45	1.65
3813813--3813866	23	2.2	24	83	9	65	24	3	1	70	1.13
3819032--3819210	52	3.5	50	87	4	252	28	13	30	27	1.95
3819032--3819210	51	3.5	51	88	4	256	28	13	30	27	1.95
3823803--3823924	49	2.5	51	82	5	151	27	12	31	28	1.93
3826266--3826293	3	9.3	3	100	0	56	67	0	0	32	0.91
3827500--3827793	141	2.1	143	83	2	378	23	22	22	31	1.98
3835272--3835306	17	2.1	17	89	10	54	28	5	5	60	1.43
3855247--3855303	27	2.1	28	86	3	80	49	3	0	47	1.18
3855247--3855318	27	2.5	28	80	8	74	52	2	0	44	1.15
3856098--3856137	19	2.1	19	100	0	80	35	10	15	40	1.80
3857869--3857904	13	2.8	14	84	16	51	27	25	0	47	1.52
3857856--3857896	18	2.2	19	87	12	59	29	24	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3858043--3858154	38	2.8	40	72	5	102	30	26	19	23	1.98
3858393--3858431	18	2.1	19	90	4	62	48	10	0	41	1.37
3859746--3859790	5	9.0	5	80	9	56	55	2	0	42	1.12
3865684--3865713	12	2.5	12	94	0	51	6	0	60	33	1.23
3865833--3865868	17	2.1	18	89	5	56	52	2	27	16	1.57
3870451--3870476	2	13.0	2	100	0	52	50	0	0	50	1.00
3870685--3870727	22	1.9	22	90	4	68	13	4	11	69	1.33
3870909--3870941	15	2.4	14	90	10	50	72	6	6	15	1.24
3873326--3873362	19	1.9	19	94	0	65	27	5	5	62	1.39
3874398--3874745	160	2.2	159	90	0	534	23	16	15	44	1.86
3884896--3884960	34	2.0	32	90	6	103	43	10	13	32	1.79
3910513--3910570	18	3.3	18	68	4	55	46	10	3	39	1.55
3919644--3919751	26	4.2	26	93	0	189	32	7	24	36	1.83
3921238--3921290	26	2.0	26	85	7	72	37	22	15	24	1.92
3926475--3926813	116	2.8	118	86	7	447	28	18	14	39	1.89
3926744--3926908	89	1.9	86	89	3	258	27	18	12	41	1.86
3926504--3927160	340	2.0	331	84	6	876	26	17	13	41	1.87
3926833--3927533	127	5.6	126	79	7	655	26	17	14	41	1.88
3931997--3932092	48	2.0	48	95	0	174	23	23	26	26	2.00
3949953--3950013	28	2.2	29	79	8	72	29	1	0	68	0.99
3951116--3951175	30	2.0	30	93	0	102	58	15	1	25	1.46
3951259--3951299	21	1.9	22	85	5	57	75	9	2	12	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3953480--3953598	61	2.0	61	81	3	141	43	15	2	37	1.61
3970191--3970231	3	13.7	3	100	0	82	31	0	0	68	0.90
3971646--3971670	6	4.2	6	100	0	50	68	0	0	32	0.90
3976665--3976721	29	2.0	29	86	6	80	43	10	1	43	1.49
3979220--3979252	14	2.4	14	90	5	50	21	3	42	33	1.68
3986552--3986644	40	2.3	40	83	5	118	27	9	12	49	1.72
3989689--3989745	30	1.9	29	89	3	87	19	26	36	17	1.94
3994535--3994593	29	2.0	30	83	3	75	30	3	15	50	1.60
3994737--3994821	31	2.8	30	73	5	73	42	15	9	32	1.79
3998069--3998096	13	2.2	13	100	0	56	39	0	0	60	0.97
3999107--3999159	24	2.2	24	87	12	74	45	0	22	32	1.53
3999308--3999375	23	3.0	23	95	0	118	7	7	38	47	1.60
4002565--4002605	16	2.5	16	88	4	55	63	7	2	26	1.33
4016863--4016893	16	1.9	16	93	0	53	58	3	0	38	1.15
4019198--4019227	5	6.0	5	100	0	60	20	60	0	20	1.37
4032078--4032121	23	1.9	23	86	9	63	40	0	0	59	0.98
4032076--4032126	22	2.3	22	80	12	61	41	0	0	58	0.98
4042196--4042252	23	2.5	24	74	8	64	56	0	3	40	1.17
4049915--4049966	3	17.3	3	95	0	95	65	0	1	32	1.04
4051839--4051875	4	9.2	4	100	0	74	24	0	24	51	1.49
4055034--4055081	16	3.0	16	80	16	55	27	0	8	64	1.22
4056674--4057189	177	2.9	177	88	1	739	29	21	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4062045--4062092	13	3.5	13	82	5	51	50	0	4	45	1.21
4063250--4063287	14	2.7	14	88	8	51	78	0	18	2	0.86
4063252--4063319	17	4.4	16	75	10	61	72	0	23	4	1.03
4063496--4063555	19	3.1	20	77	11	63	46	36	3	13	1.60
4069693--4069801	21	5.1	22	85	7	127	37	24	23	13	1.92
4069992--4070054	23	2.7	23	100	0	126	44	34	4	15	1.68
4075036--4075266	73	3.2	72	85	6	320	30	16	19	33	1.94
4075250--4075285	14	2.6	14	86	0	54	25	11	5	58	1.54
4075182--4075357	87	2.0	87	86	0	244	28	15	18	38	1.91
4075123--4075432	162	1.9	160	84	2	415	31	15	19	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295