genome.fa.s2.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  151  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51451033--51451216	29	6.3	29	88	0	242	32	29	12	25	1.92
51457079--51457165	43	2.0	43	80	12	99	28	29	18	22	1.97
51463182--51463870	47	14.6	47	93	3	1116	29	29	8	33	1.86
51466011--51466189	85	2.1	85	98	0	349	26	27	8	37	1.85
51468873--51468965	43	2.2	42	80	3	105	36	24	15	23	1.93
51468887--51468999	43	2.6	44	79	8	117	32	23	15	28	1.95
51471465--51471578	43	2.7	41	81	10	106	25	15	25	33	1.95
51478642--51478671	16	1.9	16	93	6	53	40	13	13	33	1.83
51482346--51482401	14	4.1	14	82	8	71	37	16	26	19	1.92
51482977--51483043	20	3.3	20	95	0	125	35	11	19	32	1.88
51482988--51483043	11	5.5	11	75	16	66	35	12	19	32	1.89
51483094--51483176	25	3.4	24	81	8	87	28	21	21	27	1.99
51483386--51483468	38	2.4	34	86	13	109	34	18	24	22	1.96
51486922--51486968	20	2.3	21	79	17	55	55	2	8	34	1.42
51487582--51487696	47	2.4	47	85	0	158	33	8	31	26	1.87
51487815--51487930	37	3.1	37	94	0	196	22	18	32	25	1.97
51491110--51491353	40	6.2	40	89	3	352	27	27	20	24	1.99
51493193--51493219	8	3.4	8	100	0	54	40	22	11	25	1.87
51496100--51496146	20	2.3	20	100	0	94	36	10	19	34	1.86
51496197--51496266	25	2.8	24	82	6	86	25	22	21	30	1.99
51496197--51496279	24	3.4	24	81	8	87	28	20	21	28	1.98
51496197--51496293	25	4.0	23	81	8	77	27	20	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51496489--51496578	38	2.7	31	76	22	101	34	16	24	24	1.95
51501134--51501301	41	4.2	40	70	18	141	29	25	21	23	1.99
51510769--51510794	13	2.0	13	100	0	52	38	15	7	38	1.76
51517081--51517228	48	3.1	48	89	0	224	38	7	24	29	1.83
51522314--51522353	21	1.9	21	85	10	55	30	0	20	50	1.49
51528241--51528377	43	3.2	43	68	10	127	34	25	11	28	1.91
51528248--51528447	86	2.3	86	92	1	321	34	22	13	29	1.92
51528274--51528438	43	3.8	43	70	9	129	33	23	15	28	1.94
51531281--51531378	28	3.5	28	90	2	135	31	28	13	26	1.94
51539644--51539713	27	2.6	26	95	2	95	31	28	12	27	1.93
51539644--51539740	28	3.5	28	90	4	135	31	27	13	26	1.94
51547360--51547537	46	3.8	46	77	7	198	29	27	20	22	1.99
51547367--51547538	93	1.8	93	92	0	290	28	27	20	22	1.99
51548542--51548620	31	2.5	31	97	0	149	26	24	18	30	1.98
51548644--51548735	42	2.2	42	94	0	157	39	20	13	27	1.89
51548882--51548976	25	3.8	24	87	6	136	25	23	25	26	2.00
51548882--51548976	50	1.9	50	91	0	154	25	23	25	26	2.00
51549779--51549843	27	2.4	27	82	5	78	21	24	18	35	1.96
51549897--51550037	27	5.1	27	75	10	97	32	7	19	40	1.80
51549894--51550037	56	2.6	54	78	7	148	32	8	18	40	1.81
51551286--51551364	37	2.1	37	90	0	122	25	31	18	24	1.98
51551478--51552381	47	18.9	47	93	2	1439	29	29	8	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51551478--51552381	96	9.5	94	92	3	1439	29	29	8	31	1.88
51551478--51552381	143	6.3	141	93	2	1441	29	29	8	31	1.88
51556393--51556471	31	2.5	30	91	4	122	27	24	17	30	1.97
51556495--51556586	42	2.2	42	94	0	157	41	18	11	28	1.86
51556734--51556803	25	2.8	25	95	0	122	24	21	25	28	1.99
51557731--51557871	27	5.1	27	71	13	108	33	9	19	38	1.83
51557728--51557869	56	2.6	53	82	5	158	33	9	19	38	1.83
51564119--51564498	48	7.9	47	76	9	311	26	18	28	26	1.98
51564133--51564402	96	2.8	96	88	1	382	26	19	28	25	1.99
51567167--51567316	48	3.1	47	77	3	147	26	21	24	27	1.99
51579411--51579481	33	2.2	33	87	10	101	26	23	19	29	1.98
51580794--51581010	46	4.8	46	79	10	232	20	21	29	29	1.98
51580790--51580961	93	1.8	93	92	0	290	20	20	29	28	1.98
51580888--51581002	41	2.7	42	87	6	151	17	23	30	28	1.97
51582452--51582507	26	2.2	26	83	0	67	26	16	17	39	1.91
51596967--51597005	14	2.7	15	85	14	55	7	12	0	79	0.93
51596965--51597007	16	2.8	17	83	16	58	6	16	0	76	0.99
51609861--51610024	40	4.2	40	85	5	210	25	21	27	26	1.99
51609861--51610024	79	2.1	79	84	6	208	25	21	27	26	1.99
51611812--51611871	27	2.3	27	85	2	77	21	23	20	35	1.96
51612744--51612862	45	2.6	44	85	10	152	22	31	20	26	1.98
51612752--51612908	45	3.4	45	81	11	151	22	29	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51618141--51618201	30	2.0	30	90	0	95	36	6	24	32	1.81
51620418--51620609	40	4.8	40	88	1	278	27	27	22	23	1.99
51623358--51623387	16	1.9	16	93	6	53	50	0	13	36	1.42
51624883--51624942	29	2.2	27	80	13	77	38	21	11	28	1.89
51624893--51624952	29	2.1	29	100	0	120	40	20	10	30	1.85
51627390--51627423	17	1.9	17	88	5	50	11	23	44	20	1.84
51627637--51627930	27	10.9	27	75	16	229	39	18	9	31	1.83
51627637--51627930	54	5.5	54	79	10	277	39	18	9	31	1.83
51627640--51627930	81	3.6	80	79	9	272	39	18	9	31	1.83
51628341--51628443	27	3.8	27	75	3	82	21	17	20	40	1.91
51628422--51628511	32	2.8	32	78	6	101	24	20	21	34	1.96
51628417--51628524	32	3.4	30	76	13	92	24	21	20	34	1.97
51636251--51636422	93	1.8	93	94	0	308	27	28	21	22	1.99
51636244--51636419	46	3.8	46	77	12	198	28	28	21	21	1.98
51637145--51637175	11	2.7	12	95	5	55	58	3	0	38	1.15
51643417--51643460	23	1.9	23	100	0	88	31	31	20	15	1.94
51644446--51644558	31	3.7	30	89	4	149	26	24	19	29	1.98
51644582--51644673	42	2.2	42	94	0	157	39	20	13	27	1.89
51644821--51644915	25	3.8	25	91	2	147	25	24	25	25	2.00
51645721--51645785	27	2.4	27	79	5	69	24	23	16	35	1.95
51645839--51645979	27	5.1	27	75	10	97	33	7	19	39	1.80
51645836--51645979	56	2.6	54	78	7	148	33	8	18	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51647239--51647316	37	2.1	36	88	2	111	25	32	17	24	1.97
51647431--51648318	47	18.9	47	92	4	1399	30	30	8	31	1.87
51647429--51648318	236	3.8	233	93	4	1449	30	30	8	31	1.87
51649681--51650112	40	10.8	40	89	2	643	23	20	28	27	1.99
51651074--51651152	37	2.1	37	88	0	113	24	31	18	25	1.98
51651271--51651683	47	8.7	47	90	3	625	28	30	8	32	1.87
51651271--51651683	142	2.9	142	92	2	645	28	30	8	32	1.87
51651271--51651662	96	4.1	96	89	5	611	28	29	8	33	1.87
51660171--51660228	29	2.0	29	100	0	116	37	17	6	37	1.76
51674500--51674554	15	3.8	14	80	7	65	74	1	21	1	1.01
51695398--51695429	16	2.1	15	94	5	55	31	18	18	31	1.95
51698454--51698761	27	11.6	27	80	7	317	40	22	11	25	1.87
51698616--51698661	22	2.1	22	92	8	76	47	21	0	30	1.51
51699056--51699150	47	2.0	47	91	0	154	24	29	21	25	1.99
51704231--51704437	85	2.5	84	90	3	317	20	18	34	26	1.96
51711861--51712085	49	4.5	50	78	7	253	26	17	26	29	1.97
51714175--51714327	46	3.3	46	75	8	148	30	19	28	22	1.98
51716020--51716285	93	2.9	93	95	1	471	28	30	20	20	1.98
51716021--51716281	46	5.6	46	78	6	285	29	29	20	20	1.98
51718431--51718471	22	1.9	22	90	5	66	12	43	26	17	1.84
51719054--51719171	43	2.8	43	90	3	195	33	25	16	25	1.96
51723164--51723333	46	3.7	46	76	10	184	31	29	18	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51723215--51723358	46	3.1	44	67	21	98	29	27	19	22	1.98
51726856--51726960	40	2.6	41	76	3	122	21	23	28	25	1.99
51735019--51735555	47	11.4	47	91	0	813	28	30	8	32	1.87
51738892--51739040	41	3.7	41	77	3	176	21	21	26	30	1.98
51741681--51741796	27	4.3	26	83	5	124	22	22	19	35	1.96
51750178--51750237	29	2.1	29	96	0	111	36	11	10	41	1.75
51754106--51754254	81	1.8	81	89	2	237	42	18	18	20	1.89
51754103--51754281	27	6.6	27	82	2	198	41	17	17	23	1.89
51754103--51754281	81	2.2	81	84	5	236	41	17	17	23	1.89
51754611--51754687	18	4.3	18	72	6	75	24	18	16	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295