genome.fa.s2.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  198  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67624189--67624491	90	3.4	90	80	8	386	33	15	19	31	1.93
67624356--67626421	642	3.2	642	95	0	3661	33	17	22	26	1.96
67626282--67626537	87	2.9	87	81	9	297	32	14	19	34	1.92
67626281--67626537	90	2.9	91	81	7	339	31	14	19	34	1.91
67626500--67626578	41	1.9	41	100	0	158	24	12	36	26	1.91
67626540--67627926	645	2.2	643	95	1	2467	32	18	23	26	1.97
67627802--67628103	89	3.4	89	80	7	389	32	16	17	32	1.93
67628623--67628915	90	3.3	90	82	7	407	33	15	18	32	1.92
67627147--67631923	821	5.8	821	93	2	8104	32	17	22	27	1.96
67629445--67629747	90	3.4	91	80	10	383	33	15	18	33	1.92
67630251--67630507	90	2.9	91	83	5	346	31	14	18	35	1.91
67630463--67630548	41	2.1	41	97	0	163	24	11	33	30	1.91
67631113--67631430	90	3.6	90	80	6	389	32	16	17	33	1.93
67633167--67633203	19	2.0	18	94	5	65	27	0	10	62	1.28
67633354--67633396	3	14.3	3	81	18	54	32	0	0	67	0.91
67633353--67633396	12	3.7	12	93	6	72	34	0	0	65	0.93
67633638--67633763	23	5.8	20	69	23	67	32	3	3	59	1.34
67643370--67643428	21	2.8	21	76	7	57	54	6	6	32	1.53
67652149--67652178	16	1.9	15	93	6	51	33	23	0	43	1.54
67667690--67667734	15	3.0	15	86	0	63	55	11	17	15	1.68
67673773--67673845	36	2.0	36	100	0	146	39	13	8	38	1.75
67674816--67674872	30	1.9	30	88	0	87	29	36	19	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67684940--67685036	51	1.9	51	82	4	124	27	28	21	21	1.99
67688403--67688434	14	2.4	14	90	10	50	21	9	28	40	1.84
67688402--67688643	50	4.8	50	80	11	262	26	16	24	31	1.96
67688456--67688640	101	1.8	101	96	0	343	25	17	25	30	1.97
67688559--67688636	24	3.2	24	63	20	61	26	15	26	30	1.96
67689160--67689497	180	1.9	180	88	2	518	37	8	20	33	1.83
67694236--67694330	27	3.4	28	89	2	129	26	12	28	32	1.93
67694261--67694343	27	3.0	27	87	5	96	30	12	25	32	1.92
67702177--67702271	27	3.4	28	89	2	129	26	12	28	32	1.93
67702202--67702284	27	3.0	27	87	5	96	30	12	25	32	1.92
67706766--67707014	50	5.0	50	78	2	275	26	19	24	29	1.98
67706767--67707012	101	2.5	100	78	3	260	26	19	24	29	1.98
67721735--67721860	46	2.7	46	95	0	216	30	27	21	20	1.98
67722281--67722340	30	2.0	30	90	0	93	30	25	8	36	1.85
67734224--67734251	9	3.1	9	100	0	56	78	0	0	21	0.75
67741403--67741445	21	2.0	21	86	0	59	25	18	32	23	1.97
67742565--67742774	46	4.6	45	76	13	171	23	29	19	27	1.98
67742565--67742774	93	2.3	89	80	12	203	23	29	19	27	1.98
67746982--67747050	6	11.2	6	79	11	77	76	2	0	20	0.91
67747004--67747044	20	2.0	20	95	0	73	82	2	0	14	0.76
67747070--67747144	9	8.3	9	75	5	71	26	10	20	42	1.84
67750459--67750487	10	2.7	11	94	5	51	58	0	37	3	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67750876--67750986	46	2.4	46	79	7	125	21	33	19	25	1.97
67750903--67751033	47	2.8	45	78	12	131	24	30	18	26	1.98
67753695--67753772	38	2.1	38	95	0	138	33	10	23	33	1.88
67758074--67758124	24	2.1	24	85	0	66	35	13	31	19	1.91
67761024--67761310	50	5.7	50	78	5	265	24	17	27	30	1.97
67761070--67761251	101	1.8	101	90	0	292	25	19	26	28	1.99
67761024--67761303	151	1.8	152	89	2	411	24	17	27	31	1.97
67762381--67762450	34	2.1	34	100	0	140	40	15	2	41	1.62
67771816--67771870	21	2.6	21	94	0	101	12	43	27	16	1.84
67787988--67788276	48	6.0	48	79	1	281	27	19	28	24	1.99
67787993--67788273	97	2.9	97	83	2	332	27	19	28	23	1.99
67792269--67792367	49	2.0	48	98	1	189	6	33	9	51	1.58
67794201--67794356	85	1.8	84	83	1	204	31	24	16	28	1.96
67794201--67794364	42	3.9	42	72	7	134	30	24	16	28	1.96
67796858--67796921	6	10.5	6	80	9	76	51	12	18	17	1.76
67796857--67796951	37	2.6	37	82	0	118	46	12	20	21	1.83
67797859--67798054	27	7.3	26	83	4	212	25	19	18	35	1.95
67797860--67798054	54	3.6	54	88	1	266	25	20	18	35	1.95
67797877--67798081	81	2.5	81	87	1	268	25	17	19	37	1.93
67798040--67798217	27	6.6	27	81	0	185	30	7	18	43	1.77
67797927--67798181	81	3.2	80	80	5	237	29	12	18	39	1.88
67798040--67798217	81	2.2	81	85	4	234	30	7	18	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67800337--67800455	6	19.3	6	70	17	75	47	13	18	20	1.81
67800351--67800455	31	3.6	31	73	15	105	47	13	19	20	1.82
67800363--67800449	25	3.5	25	75	12	81	45	14	19	19	1.85
67800594--67800657	33	2.0	32	84	3	83	37	20	21	20	1.94
67801372--67801566	27	7.2	27	85	1	230	26	14	19	38	1.91
67801345--67801566	54	4.1	53	82	2	237	26	16	19	37	1.92
67801362--67801558	81	2.4	81	86	3	263	25	15	20	38	1.92
67801440--67801729	27	10.7	27	80	7	214	28	9	20	41	1.83
67801416--67801674	81	3.2	81	82	3	272	28	10	20	40	1.86
67801524--67801729	54	3.8	54	84	3	254	29	6	20	43	1.77
67801525--67801729	81	2.5	81	85	3	288	29	6	20	43	1.76
67805408--67805502	27	3.5	26	76	7	91	31	18	20	29	1.96
67805849--67805949	33	3.0	33	88	1	139	24	21	27	25	1.99
67805915--67805970	28	2.0	28	82	0	67	21	23	28	26	1.99
67812564--67812741	27	6.6	27	79	3	115	28	28	16	26	1.97
67812564--67812741	54	3.3	55	80	10	204	28	28	16	26	1.97
67812585--67812740	82	1.9	81	85	3	215	28	28	16	26	1.97
67817643--67817696	28	1.9	28	82	14	67	40	24	0	35	1.55
67824972--67825132	38	4.2	38	89	1	223	35	24	19	20	1.96
67826558--67828035	738	2.0	738	100	0	2956	37	20	7	34	1.82
67831868--67831998	44	3.0	44	79	8	126	32	28	16	23	1.96
67840662--67840735	37	2.0	37	82	15	91	27	8	22	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67848604--67848715	40	2.8	40	83	5	147	29	16	23	30	1.96
67850440--67850496	28	2.0	28	100	0	114	49	22	7	21	1.73
67850431--67850489	28	2.0	32	84	15	83	50	20	6	22	1.71
67851535--67851625	42	2.2	42	90	4	139	42	17	25	14	1.87
67852632--67852678	16	2.9	16	81	12	60	25	10	0	63	1.26
67854862--67855086	47	4.8	46	78	8	190	29	18	28	23	1.97
67856209--67856268	21	2.9	21	87	2	77	11	35	26	26	1.91
67857551--67857626	30	2.6	30	95	4	138	39	6	7	46	1.59
67858352--67858393	22	1.9	22	95	0	75	45	26	7	21	1.77
67858628--67858653	1	26.0	1	100	0	52	0	0	0	100	0.00
67862621--67862681	18	3.4	18	68	8	61	62	4	4	27	1.37
67862621--67862692	36	2.0	36	100	0	144	55	8	8	27	1.58
67862960--67863000	20	2.0	21	85	4	57	65	4	0	29	1.13
67865076--67865192	48	2.4	49	81	2	121	23	20	27	29	1.99
67865170--67865332	89	1.8	89	86	2	238	28	19	25	26	1.99
67865217--67865332	47	2.6	45	78	6	121	27	21	26	24	1.99
67866608--67866653	19	2.4	19	92	0	74	28	23	39	8	1.84
67867159--67867183	13	1.9	13	100	0	50	20	8	16	56	1.65
67868247--67868399	27	5.7	27	81	2	157	37	9	26	26	1.86
67870163--67870286	43	2.9	42	83	7	169	30	25	12	30	1.93
67870384--67870435	25	2.1	25	100	0	104	51	15	3	28	1.60
67885808--67885885	40	2.0	40	92	0	129	16	14	34	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67890032--67890123	40	2.3	40	83	10	109	27	26	17	29	1.97
67892638--67892846	38	5.0	38	72	18	148	31	24	14	29	1.95
67892683--67892816	48	2.8	48	88	1	180	32	23	14	29	1.94
67912458--67912516	27	2.1	27	87	3	82	33	20	3	42	1.69
67912458--67912514	13	4.3	13	76	12	53	35	21	3	40	1.70
67923185--67923342	68	2.3	68	78	11	169	20	29	15	34	1.94
67928049--67928164	45	2.6	45	94	1	207	25	25	19	29	1.99
67931227--67931391	43	3.9	41	80	10	179	27	21	16	35	1.94
67933388--67933699	47	6.6	47	74	11	223	28	20	28	22	1.98
67933387--67933600	94	2.3	90	85	7	270	27	21	29	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295