genome.fa.s2.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  133  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45512375--45512514	68	2.1	68	97	0	262	32	11	27	28	1.91
45535977--45536072	47	2.0	47	95	0	174	37	11	11	39	1.78
45541409--45541520	56	2.0	56	91	5	183	38	21	12	27	1.89
45544828--45544862	17	2.1	17	100	0	70	37	5	28	28	1.80
45557256--45557431	46	3.8	46	71	15	155	20	21	29	28	1.98
45557250--45557424	93	1.9	93	89	0	269	21	21	29	28	1.98
45558788--45558831	22	2.0	22	82	8	54	45	18	6	29	1.75
45572263--45572429	46	3.6	45	79	9	149	29	17	28	24	1.98
45572709--45573578	437	2.0	437	97	0	1632	28	12	18	40	1.87
45578711--45578834	47	2.7	47	82	6	144	30	25	15	28	1.96
45578857--45578974	31	3.8	31	89	4	184	24	28	20	26	1.99
45578950--45579078	50	2.5	51	87	5	190	26	22	15	35	1.94
45583557--45583727	46	3.7	45	79	14	188	27	18	29	25	1.98
45592034--45592181	64	2.2	68	78	10	160	31	18	29	20	1.96
45592058--45592243	67	2.9	64	76	8	189	29	17	30	22	1.97
45596445--45596616	67	2.6	66	81	7	170	31	16	29	22	1.96
45596469--45596652	67	2.8	64	78	8	203	28	16	30	23	1.96
45598463--45598492	14	2.1	14	100	0	60	6	10	40	43	1.64
45600918--45600948	16	1.9	16	100	0	62	45	16	19	19	1.86
45601775--45601814	5	8.0	5	89	10	64	17	2	0	80	0.83
45606219--45606255	5	7.4	5	88	11	58	16	2	0	81	0.81
45622580--45622730	54	2.8	54	81	9	191	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45622580--45622755	27	6.6	27	79	8	162	26	15	28	30	1.96
45622580--45622755	54	3.3	51	79	10	183	26	15	28	30	1.96
45626347--45626486	55	2.5	55	80	6	158	15	26	28	29	1.96
45630999--45631346	132	2.7	130	87	0	489	31	19	22	27	1.98
45631314--45631423	44	2.5	44	76	5	107	28	18	29	24	1.98
45631995--45632023	15	2.0	15	93	6	51	68	6	13	10	1.37
45644911--45645221	38	8.1	38	87	2	406	31	23	22	22	1.99
45645236--45645515	135	2.1	135	99	0	551	33	21	5	39	1.76
45645637--45645720	43	1.9	44	87	2	125	23	30	21	23	1.99
45648449--45648477	13	2.1	14	93	6	51	51	20	0	27	1.47
45649287--45649547	46	5.6	45	77	11	190	24	29	18	27	1.98
45649283--45649547	94	2.8	88	79	12	264	24	29	18	27	1.98
45649287--45649547	140	1.9	140	82	9	336	24	29	18	27	1.98
45656846--45657106	46	5.6	46	75	14	207	24	29	18	27	1.98
45663843--45663904	21	2.9	22	69	11	56	19	37	24	19	1.94
45670631--45670737	43	2.5	42	83	5	126	29	22	15	31	1.95
45672499--45672722	104	2.2	104	94	1	387	18	19	31	31	1.95
45672641--45672792	71	2.1	72	90	1	234	23	16	28	31	1.96
45680083--45680131	25	2.0	25	95	0	89	12	24	32	30	1.92
45692737--45692797	31	2.0	29	81	12	70	37	6	26	29	1.81
45693163--45693343	97	1.8	99	90	6	298	19	19	30	29	1.97
45693259--45693409	70	2.2	69	87	3	221	23	15	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45697955--45698138	40	4.6	40	82	6	196	23	20	27	28	1.99
45697955--45698135	80	2.3	81	83	9	221	23	20	27	27	1.99
45697956--45698177	40	5.6	38	77	10	160	24	20	27	27	1.99
45698076--45698198	40	3.1	39	80	6	97	26	21	28	24	1.99
45705154--45705336	40	4.6	39	79	9	167	24	20	27	27	1.99
45705154--45705333	79	2.3	81	83	8	219	23	21	27	27	1.99
45705222--45705382	39	4.1	39	81	8	139	26	19	27	26	1.99
45708174--45708287	57	2.0	57	98	0	219	32	17	21	28	1.96
45710456--45710545	32	2.8	32	86	0	117	37	23	12	26	1.90
45713372--45713415	13	3.1	14	87	12	63	38	2	0	59	1.10
45718438--45718470	16	2.0	17	94	5	59	54	0	18	27	1.44
45726400--45726577	52	3.5	52	90	4	240	28	14	30	26	1.95
45726395--45726577	51	3.6	51	84	7	221	27	14	30	26	1.95
45728797--45728930	46	2.8	49	76	14	154	30	28	18	22	1.97
45728797--45728923	47	2.7	48	79	11	156	30	28	18	22	1.97
45738893--45738963	22	3.2	22	81	15	92	67	2	25	4	1.22
45738941--45738970	16	1.9	15	93	6	51	66	0	26	6	1.16
45747315--45747358	18	2.4	18	81	7	54	20	40	25	13	1.89
45762564--45762631	6	10.8	6	75	17	59	17	1	4	76	1.03
45766512--45766554	19	2.3	19	88	8	61	65	4	0	30	1.13
45766527--45766570	6	7.2	6	82	5	52	65	2	2	29	1.16
45767154--45767179	13	2.0	13	100	0	52	23	23	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45777851--45777916	29	2.3	29	94	0	123	18	39	19	22	1.92
45778618--45778666	20	2.5	20	80	6	55	75	2	20	2	1.00
45780066--45780100	14	2.3	16	90	9	56	51	0	2	45	1.16
45784115--45784507	44	8.8	43	71	7	214	30	18	21	30	1.96
45784116--45784453	135	2.5	138	81	5	381	30	18	21	30	1.97
45785965--45786048	3	28.0	3	70	17	59	33	4	1	60	1.25
45785965--45786031	29	2.3	30	82	12	86	32	2	1	62	1.19
45785995--45786027	11	2.9	11	95	4	57	27	6	0	66	1.15
45785966--45786048	26	3.2	27	80	16	79	33	4	1	60	1.26
45788361--45788542	98	1.9	97	82	3	231	43	9	13	32	1.77
45788352--45788560	98	2.1	98	77	2	224	43	9	12	34	1.75
45790062--45790093	5	6.6	5	92	7	57	18	0	0	81	0.70
45790062--45790092	9	3.3	9	91	8	53	19	0	0	80	0.71
45804530--45804579	20	2.5	20	80	0	55	36	14	10	40	1.79
45804543--45804662	20	6.0	20	76	3	91	39	20	5	35	1.74
45804799--45804858	23	2.7	22	79	5	66	31	20	25	23	1.98
45817563--45817619	30	1.9	30	85	0	78	12	29	33	24	1.92
45821734--45821775	3	14.3	3	85	5	59	64	0	0	35	0.94
45824907--45824945	16	2.4	16	100	0	78	56	10	28	5	1.54
45826986--45827035	26	1.9	26	91	0	82	32	10	12	46	1.74
45827786--45827835	26	1.9	26	87	0	73	34	10	10	46	1.71
45827894--45827939	24	2.0	23	82	4	56	60	8	4	26	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45828925--45829175	97	2.6	96	76	9	240	43	12	10	33	1.77
45837637--45837664	6	4.7	6	100	0	56	64	0	0	35	0.94
45837766--45837815	26	1.9	26	87	0	73	34	10	10	46	1.71
45839355--45839385	14	2.2	14	100	0	62	25	0	16	58	1.38
45841007--45841187	40	4.6	40	82	4	206	25	25	23	25	2.00
45846479--45846646	40	4.2	40	80	4	187	26	26	22	25	2.00
45848464--45848786	98	3.3	96	72	10	240	44	11	11	32	1.76
45848420--45848886	195	2.4	195	80	4	528	44	11	11	32	1.76
45850245--45850335	46	2.0	46	84	0	119	26	31	7	34	1.85
45850352--45850427	22	3.3	22	66	28	59	23	27	13	35	1.92
45850315--45850781	47	9.9	47	91	0	691	26	28	10	33	1.90
45854844--45854909	19	3.2	21	87	6	64	36	19	9	34	1.84
45854861--45854958	19	5.2	19	92	7	164	35	16	10	37	1.82
45854861--45854958	36	2.6	37	90	9	153	35	16	10	37	1.82
45855347--45856088	206	3.6	206	91	0	1110	29	21	17	31	1.96
45856050--45856524	44	10.8	43	77	10	347	27	24	17	30	1.97
45856050--45856519	132	3.6	132	86	2	599	27	24	17	31	1.97
45856136--45856528	175	2.2	175	89	1	572	27	24	17	30	1.97
45857403--45857440	10	3.7	10	89	3	58	0	10	2	86	0.66
45857397--45857438	19	2.3	19	87	4	59	2	9	2	85	0.77
45857403--45857441	11	3.6	11	82	6	53	0	10	2	87	0.65
45865161--45865336	46	3.8	46	79	10	214	21	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45865157--45865328	93	1.8	93	94	0	308	21	20	29	27	1.98
45868252--45868327	15	5.4	15	80	16	92	10	15	13	60	1.59
45868243--45868327	29	3.0	29	83	10	113	10	15	15	58	1.62
45870681--45870854	45	3.8	44	80	9	206	21	20	29	28	1.98
45872454--45872510	22	2.7	21	83	5	69	42	19	7	31	1.78
45872481--45872576	17	5.2	19	88	7	128	35	15	10	38	1.82
45874756--45874796	3	13.7	3	100	0	82	68	0	0	31	0.90
45875225--45875505	97	2.9	96	69	7	226	46	13	11	29	1.78
45875206--45875563	195	1.8	194	83	4	470	44	13	12	29	1.80
45877429--45877670	27	8.9	26	83	10	274	32	21	26	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295