genome.fa.s2.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  15  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4524212--4524237	11	2.4	11	100	0	52	84	7	0	7	0.77
4524474--4524524	26	2.0	26	84	7	68	52	7	3	35	1.49
4524934--4524981	23	2.1	23	84	7	62	66	4	2	27	1.21
4525017--4525066	25	2.0	25	84	0	64	58	8	4	30	1.45
4525217--4525241	13	1.9	13	100	0	50	64	0	0	36	0.94
4525374--4525422	25	1.9	26	88	12	75	53	8	6	32	1.55
4525379--4525430	25	2.1	25	85	7	70	53	9	5	30	1.57
4529777--4529826	21	2.4	21	93	0	82	22	4	4	70	1.21
4529783--4529821	10	3.8	10	80	6	51	23	5	2	69	1.21
4543297--4543381	29	2.7	31	85	10	120	25	14	29	30	1.95
4544515--4544563	18	2.7	19	78	9	57	79	12	0	8	0.93
4558010--4558381	75	4.9	74	75	12	288	27	16	23	32	1.96
4558178--4558398	75	3.0	73	89	1	325	27	15	24	32	1.96
4558392--4558601	74	2.8	74	95	0	366	31	15	17	35	1.91
4558392--4558630	74	3.2	73	92	2	363	30	15	17	36	1.91
4558650--4558945	89	3.5	80	77	13	254	30	17	19	32	1.95
4558466--4558945	169	2.8	170	79	9	464	29	16	18	35	1.93
4558730--4558945	89	2.4	88	85	3	274	30	17	19	32	1.95
4559143--4559320	52	3.3	52	71	13	178	27	25	16	30	1.97
4559090--4559396	111	2.8	111	95	0	544	28	22	17	30	1.97
4560353--4560383	16	1.9	16	100	0	62	45	0	0	54	0.99
4569953--4570028	30	2.5	30	80	4	82	57	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4574802--4574826	11	2.3	11	100	0	50	52	8	12	28	1.66
4580285--4580310	3	8.7	3	100	0	52	65	0	0	34	0.93
4580838--4580873	19	1.9	18	88	5	54	22	47	19	11	1.80
4585772--4585820	8	6.2	8	79	13	57	69	0	0	30	0.89
4585772--4585820	16	3.1	16	83	13	66	69	0	0	30	0.89
4587252--4587297	22	2.1	21	84	11	58	58	0	0	41	0.98
4587259--4587308	22	2.3	22	80	10	59	68	0	0	32	0.90
4587637--4587699	23	2.8	24	87	4	69	41	0	6	52	1.27
4587659--4587699	13	3.4	13	74	19	52	41	0	7	51	1.30
4593143--4593175	15	2.2	15	94	0	57	24	45	0	30	1.53
4593365--4593397	12	2.7	13	86	13	52	63	6	15	15	1.49
4602061--4602179	59	2.0	59	100	0	238	42	16	10	31	1.82
4606973--4607031	31	1.9	31	82	6	75	50	6	5	37	1.51
4607773--4607838	33	2.0	33	100	0	132	36	18	15	30	1.91
4608069--4608093	13	1.9	13	100	0	50	4	32	56	8	1.47
4608637--4608873	3	76.3	3	67	15	63	27	10	3	59	1.46
4621434--4621549	43	2.7	44	80	2	117	28	24	22	25	1.99
4622078--4622228	41	3.7	41	93	0	257	29	19	21	29	1.98
4623047--4623072	13	2.0	13	100	0	52	7	30	53	7	1.57
4623610--4623852	3	78.3	3	68	14	84	27	9	3	59	1.44
4625346--4625388	22	2.0	22	85	0	59	58	11	11	18	1.63
4625353--4625394	11	3.8	11	80	0	57	54	9	14	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4627621--4627672	17	3.2	16	78	5	52	69	1	26	1	1.10
4634946--4635017	24	3.0	25	80	8	96	25	13	19	41	1.88
4635019--4635074	24	2.3	24	81	0	67	41	5	14	39	1.68
4637461--4637499	6	6.5	6	93	0	51	15	23	17	43	1.87
4637464--4637498	12	2.9	12	91	0	61	17	25	17	40	1.90
4641898--4642275	102	3.7	102	88	0	506	13	11	33	41	1.81
4642118--4642566	45	9.7	45	75	13	358	12	16	30	41	1.84
4641898--4642365	102	4.7	100	85	5	451	13	12	32	41	1.81
4642202--4642594	90	4.4	90	89	0	579	12	17	29	40	1.86
4642100--4642594	180	2.7	180	86	3	657	12	15	29	41	1.85
4645974--4646046	26	2.7	26	79	12	67	31	6	0	61	1.22
4646407--4646447	21	1.9	22	90	5	66	29	2	9	58	1.43
4646647--4646679	17	2.1	17	88	11	52	48	6	3	42	1.43
4658631--4658779	73	2.0	73	89	0	226	24	16	25	34	1.95
4658619--4659318	160	4.4	159	83	10	779	26	15	21	35	1.94
4658708--4658866	87	1.8	87	93	0	273	26	13	23	36	1.92
4658789--4659175	73	5.1	74	80	9	456	27	16	22	33	1.95
4658864--4659026	86	1.9	86	88	2	247	25	13	22	38	1.91
4659155--4659189	14	2.5	14	90	9	54	17	20	5	57	1.60
4659246--4659279	16	2.1	16	88	0	50	17	8	2	70	1.25
4659083--4659498	91	4.7	91	77	10	370	27	16	19	36	1.94
4661717--4661757	21	1.9	22	90	5	66	29	2	9	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4661952--4661984	17	2.1	17	88	11	52	48	6	3	42	1.43
4663393--4663441	20	2.5	20	90	3	73	63	0	0	36	0.95
4664975--4665460	45	10.8	45	82	4	487	12	16	28	42	1.85
4664993--4665453	90	5.1	90	88	3	615	11	16	28	42	1.84
4675153--4675272	64	1.9	64	96	0	222	30	14	16	38	1.88
4675336--4675728	130	3.0	129	84	4	495	29	19	23	27	1.98
4675406--4675770	130	2.8	130	80	5	414	29	18	23	27	1.98
4675737--4676357	44	14.1	45	67	12	236	28	23	20	27	1.99
4675729--4676234	88	5.8	88	88	1	728	29	24	19	26	1.99
4675729--4676234	263	1.9	264	88	1	764	29	24	19	26	1.99
4675729--4676340	88	7.0	87	85	2	622	28	23	21	26	1.99
4675735--4676315	263	2.2	262	83	3	729	28	24	20	27	1.99
4676284--4676408	45	2.8	44	78	3	106	33	20	20	26	1.96
4679326--4679364	19	2.1	18	85	4	51	38	7	10	43	1.67
4682391--4682416	10	2.6	10	100	0	52	61	19	7	11	1.53
4682667--4683044	90	4.2	90	89	3	539	12	17	28	41	1.86
4682667--4683057	135	2.9	135	83	3	509	13	17	28	40	1.87
4682668--4683057	45	8.7	45	81	3	419	13	17	28	40	1.87
4684385--4684418	17	2.1	15	89	10	50	0	17	0	82	0.67
4694768--4694813	5	9.0	5	80	17	51	21	2	0	76	0.90
4694768--4694813	11	4.5	10	82	17	51	21	2	0	76	0.90
4697512--4697560	25	2.0	25	84	8	64	22	36	8	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4698293--4698317	12	2.1	12	100	0	50	0	16	0	84	0.63
4698322--4698395	38	1.9	38	86	0	103	14	20	24	40	1.90
4709176--4709225	21	2.4	20	80	6	55	60	10	2	28	1.40
4709179--4709214	18	1.9	19	88	5	56	58	11	2	27	1.46
4711210--4711238	14	2.1	14	100	0	58	20	27	20	31	1.98
4711388--4711578	101	1.9	101	90	0	301	29	26	16	27	1.97
4711578--4712196	180	3.5	178	84	3	786	28	22	18	30	1.97
4715291--4715330	10	4.0	10	81	12	55	20	10	2	67	1.31
4720704--4720744	22	1.9	22	90	5	66	14	43	21	19	1.87
4723595--4723771	50	3.5	49	89	3	264	35	15	22	26	1.94
4723742--4723864	31	4.0	31	86	0	165	26	19	26	26	1.99
4723882--4724007	46	2.6	48	87	4	175	28	14	26	30	1.95
4723882--4724022	49	2.9	48	88	4	187	29	12	26	31	1.93
4726724--4726754	16	1.9	16	93	0	53	35	22	0	41	1.54
4726721--4726760	20	2.0	20	85	0	53	37	22	0	40	1.54
4726946--4727201	55	4.8	54	78	6	247	21	24	17	35	1.95
4728676--4728747	29	2.4	30	81	6	94	38	1	0	59	1.06
4730605--4730880	102	2.7	102	84	2	356	14	14	30	40	1.86
4730860--4731290	45	9.7	45	77	5	358	14	18	27	39	1.89
4730842--4731289	90	5.0	90	86	3	586	13	17	27	40	1.88
4730860--4731290	135	3.2	135	76	9	434	14	18	27	39	1.89
4732412--4732480	35	2.0	35	97	0	129	69	8	7	14	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4732412--4732467	17	3.2	17	70	5	58	75	8	5	10	1.19
4734024--4734236	106	2.0	106	86	1	293	38	14	16	30	1.88
4737875--4737906	3	10.7	3	100	0	64	68	0	0	31	0.90
4739554--4739625	4	18.0	4	91	0	63	0	9	47	43	1.36
4739557--4739614	12	4.8	12	89	0	71	0	12	50	37	1.40
4745545--4745616	23	3.1	23	80	4	65	70	4	22	2	1.17
4747604--4747631	4	7.0	4	100	0	56	75	0	0	25	0.81
4751978--4752284	45	6.8	45	79	5	307	14	15	27	42	1.86
4751992--4752260	135	2.0	135	83	2	344	13	15	27	43	1.84
4752000--4752277	90	3.1	90	87	0	385	12	15	28	42	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295