genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  97  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31129030--31129184	42	3.7	42	86	3	204	29	16	23	30	1.96
31129030--31129184	85	1.8	84	84	4	213	29	16	23	30	1.96
31129025--31129203	85	2.1	84	78	7	200	28	15	24	31	1.95
31131032--31131348	47	6.7	49	72	14	240	26	19	29	23	1.98
31131035--31131304	94	2.8	96	79	10	304	27	18	30	24	1.98
31134679--31134807	46	2.8	46	94	2	215	30	29	20	19	1.97
31142209--31142380	93	1.8	93	95	2	310	28	29	20	20	1.98
31142202--31142377	46	3.8	46	79	14	209	29	29	20	20	1.98
31147767--31147828	31	2.0	32	87	3	90	35	19	24	20	1.96
31150498--31150561	33	2.0	32	84	3	83	37	20	21	20	1.94
31151875--31152211	182	1.9	182	90	0	548	35	29	10	24	1.90
31153618--31153693	37	2.1	37	94	0	134	25	10	22	42	1.85
31157042--31157196	42	3.7	42	83	6	188	30	14	23	30	1.95
31157037--31157215	85	2.1	84	78	7	200	29	13	24	32	1.94
31161624--31161814	40	4.8	40	81	6	192	25	26	21	26	2.00
31166244--31166419	46	3.8	46	76	12	198	21	21	28	28	1.98
31166241--31166412	93	1.8	93	94	0	308	22	21	28	27	1.99
31169583--31169619	14	2.6	14	91	0	56	64	0	2	32	1.07
31183713--31183873	82	1.9	84	92	3	272	52	9	13	24	1.70
31183951--31184022	32	2.3	32	82	2	83	40	4	9	45	1.56
31184150--31184192	16	2.6	17	85	7	54	44	0	2	53	1.13
31184150--31184189	17	2.5	16	84	11	55	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31184604--31184685	42	1.9	42	82	7	103	52	2	8	36	1.45
31184663--31184753	43	2.1	45	83	4	114	53	1	8	36	1.39
31185706--31185773	22	3.1	22	91	0	118	27	13	25	33	1.93
31189316--31189414	29	3.4	28	75	4	90	33	25	14	27	1.94
31192504--31192687	40	4.6	40	84	4	244	24	23	26	25	2.00
31192508--31192687	83	2.2	80	89	3	263	23	24	27	24	2.00
31201917--31202015	23	4.4	23	80	11	98	34	20	21	24	1.97
31201928--31202015	23	3.9	23	81	10	110	36	18	21	23	1.95
31211681--31211722	20	2.1	20	100	0	84	30	9	9	50	1.67
31213318--31213467	43	3.5	43	83	7	198	31	26	18	24	1.97
31228057--31228234	27	6.6	27	84	3	205	29	28	15	26	1.96
31228078--31228233	82	1.9	81	88	3	233	29	28	15	26	1.96
31236245--31236422	27	6.6	27	84	3	205	29	28	15	26	1.96
31236266--31236421	82	1.9	81	88	3	233	29	28	15	26	1.96
31243832--31244053	48	4.6	48	84	3	268	26	18	29	26	1.98
31243832--31244139	96	3.3	97	80	9	309	27	18	28	26	1.98
31246893--31247065	46	3.6	46	75	12	152	26	19	30	23	1.98
31249959--31250252	50	5.8	50	82	4	313	31	26	17	24	1.97
31249962--31250248	151	1.9	152	88	1	432	32	26	17	24	1.97
31250165--31250249	26	3.3	26	64	18	68	36	25	11	25	1.90
31256929--31257002	29	2.6	29	86	4	96	25	31	16	27	1.96
31267799--31268100	47	6.5	47	72	14	209	31	18	27	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31267897--31268100	44	4.4	46	72	18	156	29	18	28	22	1.97
31268839--31268949	55	2.0	55	87	6	163	21	26	30	21	1.98
31269457--31269502	23	2.0	23	84	12	60	45	10	6	36	1.65
31269464--31269508	23	2.0	23	82	8	56	40	13	8	37	1.76
31277233--31277278	23	2.0	23	84	12	60	45	10	6	36	1.65
31277240--31277284	23	2.0	23	82	8	56	40	13	8	37	1.76
31277312--31277343	16	2.0	16	100	0	64	37	25	12	25	1.91
31308532--31308615	43	2.0	43	92	0	141	48	14	7	29	1.70
31308641--31308685	19	2.4	18	82	13	56	44	15	2	37	1.59
31313267--31313359	43	2.2	44	90	3	145	51	12	6	29	1.65
31313381--31313420	19	2.2	18	90	4	62	42	17	2	37	1.63
31313967--31314027	28	2.1	29	87	3	88	29	29	13	27	1.94
31315546--31315584	16	2.4	17	91	4	62	12	5	33	48	1.63
31315868--31315908	18	2.2	19	83	12	50	14	39	26	19	1.90
31316102--31316147	23	2.0	23	84	12	60	45	10	6	36	1.65
31316109--31316153	23	2.0	23	82	8	56	40	13	8	37	1.76
31321275--31321313	16	2.4	17	95	4	71	12	5	33	48	1.63
31330261--31330438	27	6.6	27	84	3	205	29	28	15	26	1.96
31330282--31330437	82	1.9	81	88	3	233	29	28	15	26	1.96
31338451--31338628	27	6.6	27	84	3	205	29	28	15	26	1.96
31338472--31338627	82	1.9	81	88	3	233	29	28	15	26	1.96
31348304--31348357	27	2.0	27	92	0	90	40	25	12	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31362364--31362388	7	3.6	7	100	0	50	16	56	0	28	1.41
31370593--31370636	10	4.0	11	85	8	54	68	6	11	13	1.39
31370594--31370638	22	2.0	22	91	4	72	71	6	11	11	1.31
31374761--31374882	43	2.9	41	79	7	127	30	18	23	27	1.97
31374761--31374851	42	2.1	42	82	7	112	30	15	24	29	1.95
31375940--31375993	20	2.7	20	85	0	81	20	33	29	16	1.95
31378050--31378146	27	3.6	27	85	0	131	41	14	21	22	1.89
31380277--31380352	34	2.2	33	88	4	107	27	22	23	26	1.99
31387904--31387985	34	2.4	33	83	4	92	30	23	20	25	1.99
31400128--31400187	27	2.2	27	84	0	75	43	15	13	28	1.84
31402250--31402309	30	2.1	28	84	6	75	35	16	3	45	1.64
31414968--31414997	14	2.1	14	93	0	51	33	0	46	20	1.51
31433536--31433597	29	2.1	29	100	0	124	32	9	24	33	1.88
31437187--31437217	12	2.7	12	95	5	55	16	6	0	77	0.97
31440063--31440186	39	3.2	39	86	2	133	32	26	16	24	1.96
31443493--31443607	29	4.0	28	82	8	142	26	31	15	26	1.96
31443479--31443594	58	2.0	57	86	3	162	25	32	15	25	1.95
31443479--31443594	29	4.1	29	79	7	121	25	32	15	25	1.95
31454569--31454596	14	2.0	14	100	0	56	78	0	0	21	0.75
31454569--31454614	19	2.4	19	89	7	67	76	2	2	19	1.00
31454569--31454603	9	3.5	10	88	11	54	77	0	2	20	0.90
31454569--31454603	5	7.0	5	90	9	54	77	0	2	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31456456--31456480	13	1.9	13	100	0	50	16	40	28	16	1.89
31463654--31463679	12	2.2	12	100	0	52	30	26	7	34	1.85
31465398--31465673	9	31.0	9	66	17	78	35	2	15	47	1.58
31465436--31465673	18	13.3	18	68	16	102	35	2	14	47	1.58
31465454--31465668	74	2.9	74	95	1	376	35	2	14	47	1.57
31465940--31467232	106	12.4	104	91	4	2074	55	3	5	35	1.40
31465940--31467232	210	6.2	210	96	1	2385	55	3	5	35	1.40
31467683--31467733	18	2.8	18	96	0	93	47	7	9	35	1.66
31470325--31470417	44	2.2	43	90	3	143	37	1	40	20	1.60
31471252--31471287	15	2.5	15	90	4	56	27	5	0	66	1.13
31471323--31471376	19	2.7	19	82	5	54	48	29	0	22	1.51
31471314--31471373	14	4.4	14	77	8	61	46	31	0	21	1.52
31472101--31472488	154	2.5	154	82	4	442	24	25	18	31	1.97
31484201--31484230	14	2.2	14	94	5	53	6	13	0	80	0.91
31491645--31491673	12	2.5	12	94	5	51	44	17	0	37	1.49
31494069--31494105	17	2.1	18	85	14	51	24	5	2	67	1.25
31500508--31500580	26	2.7	27	70	8	69	45	1	1	52	1.18
31500563--31500605	14	3.1	14	80	10	52	37	0	0	62	0.95
31500742--31500838	32	3.0	32	100	0	194	44	21	6	27	1.76
31504129--31504304	47	3.7	47	70	9	133	22	28	19	28	1.98
31504690--31504747	30	1.9	30	85	0	80	29	24	12	34	1.91
31504876--31504925	25	2.0	25	100	0	100	12	16	20	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31504880--31504934	25	2.2	25	90	0	83	14	20	16	49	1.80
31506978--31507025	24	2.0	24	87	0	69	37	6	8	47	1.59
31515553--31515706	56	2.8	54	88	5	211	27	33	18	19	1.96
31521063--31521173	40	2.8	40	84	0	150	44	10	18	27	1.82
31523728--31523792	20	3.3	19	73	16	51	38	16	21	23	1.93
31524325--31524378	25	2.2	25	83	6	65	68	9	9	12	1.39
31528365--31528522	40	4.0	40	88	0	208	38	12	21	27	1.90
31528659--31528730	27	2.7	27	80	4	74	47	9	18	25	1.78
31532164--31532205	17	2.6	16	88	7	66	14	7	2	76	1.10
31532628--31532661	10	3.5	10	88	4	52	0	29	0	70	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295