genome.fa.s2.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  161  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54873298--54873340	22	2.0	22	85	0	59	18	18	20	41	1.90
54880237--54880381	40	3.6	40	85	4	193	25	24	26	23	2.00
54888248--54888392	40	3.6	40	84	4	184	25	24	26	24	2.00
54889343--54889390	24	2.1	23	92	7	80	33	27	10	29	1.90
54889821--54890038	40	5.5	40	88	5	293	25	27	22	24	2.00
54897759--54897976	40	5.5	40	86	2	289	27	27	21	24	1.99
54902381--54902424	20	2.2	20	88	4	63	25	22	11	40	1.87
54906845--54907148	40	7.7	40	86	1	382	27	26	21	24	1.99
54915198--54915458	40	6.6	40	89	1	382	29	26	20	23	1.99
54918490--54918524	16	2.2	16	89	0	52	20	22	2	54	1.58
54922997--54923036	20	2.0	20	85	0	53	10	25	22	42	1.84
54928324--54928383	30	2.0	30	87	3	86	41	5	23	30	1.75
54928689--54928838	67	2.3	64	80	8	160	29	16	28	26	1.96
54928828--54929025	50	4.0	50	85	1	263	27	19	25	28	1.98
54932788--54932848	30	2.1	29	96	3	113	36	22	16	24	1.94
54940124--54940215	39	2.4	39	100	0	184	29	25	20	25	1.99
54940188--54940251	30	2.2	29	97	2	119	34	23	17	25	1.96
54944861--54944944	43	2.0	43	88	4	125	46	4	23	25	1.72
54952726--54952775	5	8.7	6	81	18	54	82	0	14	4	0.82
54954702--54954750	24	2.0	24	84	4	62	28	8	4	59	1.45
54955026--54955080	24	2.3	24	80	0	65	32	14	16	36	1.89
54958606--54958638	9	3.8	9	92	8	59	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54979211--54979272	27	2.3	26	86	8	81	37	20	22	19	1.95
54980162--54980239	38	2.1	38	97	0	147	24	29	11	34	1.91
54994554--54994601	3	16.3	3	89	4	53	0	35	6	58	1.23
54997127--54997195	17	4.4	15	77	18	70	50	0	0	49	1.00
54997127--54997191	29	2.2	30	91	5	105	49	0	0	50	1.00
54997157--54997199	18	2.4	19	85	11	56	48	0	0	51	1.00
54997127--54997195	13	4.4	15	81	18	79	50	0	0	49	1.00
55000030--55000069	20	2.0	20	95	0	71	17	40	30	12	1.86
55012504--55012549	24	1.9	24	90	0	74	28	23	23	23	2.00
55015325--55015385	6	10.5	6	85	3	63	16	0	6	77	0.98
55022780--55022846	23	2.9	23	72	14	66	61	4	0	34	1.16
55022779--55022853	5	14.4	5	74	14	55	61	4	0	34	1.15
55022822--55022854	8	4.2	8	88	7	50	66	0	0	33	0.92
55022782--55022967	7	26.6	7	66	24	65	58	3	3	34	1.32
55022816--55022967	20	7.1	20	72	16	92	57	2	3	35	1.31
55022913--55022982	21	3.2	21	84	10	70	60	0	7	32	1.24
55025069--55025249	94	1.9	94	87	2	265	25	22	20	30	1.98
55026976--55027156	94	1.9	94	86	4	258	25	20	19	34	1.96
55038649--55038698	25	2.0	26	84	11	68	42	2	2	54	1.23
55038773--55038819	13	3.6	13	83	8	60	61	0	2	36	1.08
55042395--55042462	27	2.6	27	88	2	93	32	20	14	32	1.93
55042881--55044205	662	2.0	663	86	1	1881	36	19	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55056613--55056820	53	3.9	54	75	4	204	22	22	17	37	1.93
55060828--55060968	39	3.6	39	94	0	237	24	28	22	24	2.00
55062205--55062249	23	1.9	24	86	4	65	6	17	2	73	1.15
55068816--55068959	39	3.7	39	89	0	216	25	27	22	25	2.00
55070197--55070253	25	2.5	23	81	15	66	8	19	1	70	1.23
55072048--55072100	27	2.0	26	85	3	70	47	1	0	50	1.12
55072043--55072102	27	2.4	25	78	10	68	45	1	0	53	1.10
55079651--55079757	43	2.5	43	89	1	160	24	21	28	26	1.99
55080339--55080371	16	1.9	18	88	11	52	18	12	18	51	1.76
55080842--55080872	15	2.1	15	100	0	62	19	6	0	74	1.03
55080854--55080911	28	2.1	27	90	3	89	27	5	0	67	1.12
55080861--55080930	28	2.5	28	85	0	95	22	4	4	68	1.25
55086990--55087031	20	2.1	20	95	0	75	23	16	23	35	1.95
55093210--55093234	9	2.8	9	100	0	50	8	12	20	60	1.57
55114231--55114746	260	2.0	259	91	1	836	27	11	25	34	1.91
55121553--55121605	26	2.0	26	100	0	106	7	35	0	56	1.28
55122970--55123041	34	2.2	33	87	7	101	29	20	22	27	1.99
55124791--55124946	57	2.7	57	72	8	147	31	20	17	30	1.96
55131084--55131338	68	3.9	63	74	13	196	30	16	29	23	1.96
55137917--55138131	39	5.5	40	84	6	262	26	27	20	25	1.99
55137917--55138131	79	2.7	79	84	6	267	26	27	20	25	1.99
55138106--55138154	21	2.3	21	96	0	89	30	26	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55145801--55146029	40	5.7	40	82	8	259	25	27	21	24	1.99
55145801--55146029	81	2.8	81	83	9	270	25	27	21	24	1.99
55163819--55163856	3	12.7	3	94	0	67	34	0	31	34	1.58
55177740--55177769	2	15.0	2	100	0	60	0	0	50	50	1.00
55177925--55177981	15	3.9	15	86	2	80	36	0	10	52	1.36
55177921--55177979	30	2.0	28	93	6	100	33	0	10	55	1.33
55178365--55178439	21	3.4	23	82	12	95	13	21	26	38	1.90
55180019--55180202	14	13.1	14	73	4	102	34	12	20	33	1.90
55182273--55182305	17	1.9	17	100	0	66	12	24	21	42	1.86
55183255--55183292	16	2.4	16	82	8	51	65	0	0	34	0.93
55183207--55183315	47	2.3	48	78	7	127	53	0	1	44	1.17
55184005--55184030	13	2.0	13	100	0	52	46	0	0	53	1.00
55186623--55186671	26	2.0	24	88	8	71	63	6	0	30	1.19
55186658--55186700	21	2.0	22	81	4	52	69	9	2	18	1.26
55190257--55190292	10	3.6	10	84	0	54	19	25	19	36	1.95
55190247--55190294	20	2.4	20	78	0	69	22	29	16	31	1.96
55190247--55190300	20	2.7	19	72	11	54	22	29	18	29	1.97
55192848--55192895	6	7.8	6	78	2	51	72	2	22	2	1.05
55192848--55192945	18	5.4	18	70	14	76	66	2	24	7	1.28
55194680--55194715	10	3.6	10	88	0	54	13	25	25	36	1.93
55194670--55194714	20	2.2	20	84	0	54	17	28	20	33	1.95
55194678--55194715	20	1.9	20	94	0	67	13	26	23	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55198509--55198558	10	5.0	10	81	13	59	68	2	8	22	1.26
55199220--55199401	96	1.9	97	89	1	285	30	26	14	28	1.95
55200197--55200249	15	3.2	17	82	12	58	77	1	1	18	0.96
55203218--55203251	18	1.9	18	94	5	61	55	5	11	26	1.58
55203967--55204006	20	2.0	20	90	9	64	70	0	7	22	1.12
55218528--55218601	31	2.4	31	86	4	96	14	45	13	25	1.82
55220695--55220746	24	2.2	24	86	6	70	59	13	1	25	1.44
55228957--55229104	41	3.5	41	81	6	127	28	22	19	29	1.98
55229023--55229106	45	1.9	43	85	9	116	28	23	19	28	1.98
55229070--55229597	177	3.0	177	90	1	788	26	26	18	29	1.98
55229132--55229408	88	3.1	87	66	11	229	26	25	19	28	1.98
55243208--55243234	13	2.1	13	100	0	54	29	22	18	29	1.97
55246632--55246691	30	2.0	30	96	0	111	41	16	20	21	1.90
55253226--55253338	41	2.8	41	86	0	163	27	23	19	29	1.98
55253364--55253687	177	1.8	177	85	0	459	27	25	18	28	1.98
55253453--55253591	44	3.1	44	68	9	102	27	27	14	30	1.95
55253364--55253646	88	3.2	88	70	6	239	28	25	17	28	1.98
55276116--55276215	41	2.4	41	88	0	146	30	23	20	27	1.98
55276226--55276572	177	2.0	177	88	1	516	26	25	19	29	1.98
55276234--55276617	177	2.2	178	84	2	470	27	25	17	29	1.98
55280954--55281012	28	2.1	28	96	0	109	30	10	15	44	1.79
55283136--55283380	49	4.9	49	81	4	303	27	17	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55289370--55289401	13	2.4	13	94	5	55	12	0	0	87	0.54
55292680--55292863	40	4.6	39	82	9	203	23	22	28	25	1.99
55292732--55292896	79	2.1	79	83	6	201	25	20	27	26	1.99
55294750--55294787	20	1.9	19	85	15	51	55	5	7	31	1.51
55294926--55294985	19	3.2	18	74	9	57	66	1	1	30	1.11
55294933--55295012	11	6.8	11	76	17	56	63	2	3	30	1.25
55295319--55295361	21	2.0	21	100	0	86	53	9	9	27	1.63
55296736--55297234	205	2.5	202	92	2	799	29	21	17	31	1.96
55296736--55297234	200	2.5	200	92	2	802	29	21	17	31	1.96
55304429--55304488	18	3.3	19	68	17	54	63	6	1	28	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295