genome.fa.s2.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  113  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38480721--38480888	27	6.2	27	83	5	180	37	18	17	26	1.93
38488180--38488353	27	6.4	27	82	5	199	38	20	17	23	1.93
38488180--38488352	54	3.2	54	90	1	258	38	20	17	23	1.93
38488181--38488353	81	2.1	81	88	0	247	38	20	17	23	1.93
38490355--38491173	408	2.0	408	98	0	1593	31	21	12	34	1.91
38491966--38491990	10	2.5	10	100	0	50	44	40	0	16	1.47
38496042--38496129	43	2.0	43	97	0	167	48	4	17	29	1.66
38499141--38499368	40	5.7	40	96	0	402	21	26	20	30	1.98
38514040--38514162	40	3.1	40	90	0	192	16	16	28	39	1.90
38514241--38514335	43	2.2	43	86	0	136	14	25	28	31	1.95
38516941--38517049	54	2.0	54	98	0	209	48	11	26	12	1.76
38524541--38524716	46	3.8	46	76	11	171	23	21	26	29	1.99
38524539--38524708	93	1.8	93	88	2	261	23	22	25	28	1.99
38529996--38530171	46	3.8	46	78	11	198	22	19	27	30	1.98
38529993--38530163	93	1.8	93	89	2	272	22	20	27	29	1.99
38534138--38534271	48	2.8	48	82	4	144	29	27	19	23	1.98
38543697--38543822	28	4.5	28	89	4	166	32	28	12	26	1.93
38551761--38551942	28	6.5	28	94	1	294	33	27	12	26	1.92
38553950--38554209	46	5.7	46	90	0	405	18	23	15	42	1.89
38556351--38556388	19	2.0	20	89	5	60	47	7	0	44	1.32
38558149--38558335	49	3.8	49	79	4	207	28	26	17	27	1.98
38558155--38558340	100	1.9	99	92	3	311	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38561212--38561251	20	2.0	20	85	0	53	42	22	25	10	1.84
38561227--38561391	41	4.1	40	85	6	215	36	18	25	18	1.94
38561308--38561370	20	3.1	20	65	13	56	41	20	23	14	1.89
38564440--38564484	22	2.0	22	95	0	81	44	22	20	13	1.85
38566932--38567186	40	6.5	40	90	3	385	25	27	22	24	2.00
38569166--38569206	21	2.0	21	85	0	55	48	14	4	31	1.65
38570017--38570124	43	2.5	43	90	1	173	37	25	12	24	1.90
38577929--38577968	18	2.2	18	100	0	80	22	15	15	47	1.82
38582367--38582400	17	1.9	18	94	5	61	17	35	2	44	1.64
38585687--38585739	22	2.6	19	77	14	52	35	1	16	45	1.59
38586122--38586262	57	2.5	57	92	2	248	29	17	22	30	1.97
38595321--38595373	26	2.0	26	81	3	61	26	13	20	39	1.89
38595653--38595691	21	1.9	21	89	5	62	23	28	20	28	1.99
38599410--38599466	26	2.2	26	83	3	69	26	19	19	35	1.95
38613927--38613952	7	3.7	7	100	0	52	73	0	0	26	0.84
38614112--38614174	26	2.4	26	82	15	76	42	1	0	55	1.09
38618317--38618383	33	2.0	33	100	0	134	35	16	14	32	1.90
38622860--38622902	16	2.7	15	82	10	50	48	6	16	27	1.71
38626045--38626100	24	2.4	23	85	8	78	53	12	0	33	1.39
38627830--38627875	14	3.4	14	73	11	51	43	4	0	52	1.21
38627824--38627875	26	2.1	25	89	10	81	40	3	0	55	1.18
38630311--38630368	25	2.3	25	81	0	62	22	22	24	31	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38630327--38630389	25	2.6	25	74	2	65	20	20	25	33	1.97
38651479--38651503	13	1.9	13	100	0	50	16	4	16	64	1.44
38654211--38654240	9	3.3	9	90	0	51	10	73	0	16	1.09
38659543--38659649	46	2.3	47	80	9	121	30	15	28	25	1.96
38659968--38660051	42	2.0	42	100	0	168	35	7	21	35	1.81
38660986--38661024	21	1.9	21	94	5	71	10	38	30	20	1.86
38661519--38661599	38	2.1	38	97	0	153	49	11	13	25	1.75
38661539--38661599	20	3.2	20	68	17	65	50	11	13	24	1.74
38661521--38661583	18	3.4	18	69	16	56	46	11	15	26	1.80
38661854--38661995	43	3.3	42	77	8	135	32	23	16	27	1.96
38668947--38669113	43	3.9	43	72	8	135	32	24	14	27	1.95
38671361--38671533	46	3.7	46	75	13	174	29	26	21	22	1.99
38671956--38672015	30	2.0	30	86	0	84	33	25	5	36	1.78
38678999--38679149	43	3.5	43	81	5	164	35	23	13	27	1.92
38683214--38683465	40	6.4	40	86	3	307	26	28	21	23	1.99
38683214--38683465	79	3.2	79	83	6	280	26	28	21	23	1.99
38683248--38683465	119	1.8	120	87	6	327	27	27	22	22	1.99
38691178--38691433	40	6.5	40	89	3	333	25	28	23	23	2.00
38691178--38691433	79	3.2	79	86	5	331	25	28	23	23	2.00
38691178--38691430	119	2.1	118	86	5	341	25	28	23	23	2.00
38694932--38695087	42	3.7	42	76	6	129	27	21	16	33	1.95
38695198--38695279	39	2.1	39	95	0	146	56	13	4	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38695210--38695272	19	3.3	19	68	27	60	55	11	6	26	1.59
38704406--38704473	33	2.1	33	85	0	91	23	22	32	22	1.98
38704556--38704668	27	4.2	27	79	4	95	34	21	24	19	1.96
38704647--38704746	27	3.7	28	80	7	100	34	18	27	21	1.96
38704632--38704765	27	5.0	27	75	1	72	35	19	24	20	1.95
38707312--38707370	24	2.5	24	76	15	61	27	20	15	37	1.92
38710893--38710935	22	2.0	22	100	0	86	23	9	13	53	1.69
38710845--38710990	80	1.9	77	91	4	238	34	8	17	39	1.81
38710922--38711011	30	3.2	30	64	20	75	36	7	18	36	1.80
38714632--38714807	40	4.4	40	88	3	241	26	22	26	25	2.00
38716744--38716871	67	1.9	67	88	0	193	30	27	21	20	1.98
38717636--38718180	276	2.0	276	89	2	835	31	23	11	33	1.90
38724184--38724325	40	3.5	40	82	4	169	23	23	25	26	2.00
38731899--38731946	25	1.9	25	86	0	69	33	25	16	25	1.96
38731983--38732045	20	3.2	20	93	0	108	36	12	17	33	1.88
38732099--38732242	24	6.0	24	84	8	186	27	21	21	29	1.99
38732436--38732499	31	2.1	31	90	0	101	39	15	23	21	1.92
38762209--38762258	22	2.5	19	84	12	64	36	10	20	34	1.86
38762315--38762438	23	5.2	24	82	10	146	29	20	20	29	1.98
38762314--38762438	24	5.2	24	81	13	159	29	20	20	29	1.98
38766838--38766959	40	3.0	40	92	0	208	27	27	20	25	1.99
38770754--38770858	28	3.8	28	78	7	106	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38789758--38789843	43	2.0	43	100	0	172	25	16	27	30	1.97
38803383--38803461	29	2.7	29	82	5	97	27	31	15	25	1.95
38806127--38806380	54	4.8	53	78	11	211	35	17	25	21	1.95
38806137--38806333	107	1.8	108	86	4	290	34	16	25	22	1.95
38810459--38810532	27	2.7	27	91	0	121	33	17	16	32	1.92
38810524--38810643	27	4.4	27	84	0	141	40	19	17	23	1.92
38812918--38813165	6	40.3	6	71	16	161	47	13	18	19	1.81
38812939--38813165	31	7.5	31	70	17	174	47	13	18	19	1.82
38812945--38813165	25	8.7	25	76	10	161	47	14	19	19	1.82
38812947--38813161	37	6.0	37	73	14	102	47	14	18	19	1.82
38813382--38813434	27	2.0	26	81	3	61	37	18	26	16	1.93
38813679--38813865	27	6.9	27	82	2	214	25	20	18	35	1.95
38813682--38813865	81	2.3	81	87	2	255	25	20	17	35	1.95
38813682--38813900	81	2.7	81	84	3	228	26	18	18	36	1.94
38817921--38818010	42	2.1	42	84	8	121	23	18	26	31	1.98
38820746--38820887	40	3.6	40	91	2	225	25	28	23	23	2.00
38836524--38836567	21	2.1	21	83	8	54	6	22	11	59	1.55
38845552--38845927	50	7.5	50	74	8	302	27	16	26	29	1.97
38845696--38845877	101	1.8	101	84	4	251	28	17	26	28	1.98
38845545--38845934	149	2.6	149	88	2	568	27	16	26	29	1.97
38847866--38848009	56	2.6	54	84	6	180	25	11	25	37	1.89
38848264--38848350	44	2.0	44	88	4	131	29	11	16	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38852702--38852857	27	5.7	27	78	6	145	27	28	16	27	1.97
38852707--38852858	54	2.8	55	80	4	182	26	28	16	28	1.97
38860808--38860963	27	5.7	27	78	6	145	27	28	16	27	1.97
38860813--38860964	54	2.8	55	80	4	182	26	28	16	28	1.97
38867144--38867293	41	3.6	41	77	10	162	22	22	28	27	1.99
38867124--38867293	41	4.2	40	74	18	161	22	22	27	27	1.99
38878056--38878178	43	2.9	43	87	1	176	26	21	30	21	1.98
38878155--38878259	40	2.6	40	73	1	102	28	20	27	23	1.99
38880077--38880456	38	8.9	41	72	19	244	30	23	15	31	1.95
38880083--38880287	85	2.4	85	95	0	365	30	23	15	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295