genome.fa.s2.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  289  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98009684--98009720	17	2.2	17	90	0	56	35	5	0	59	1.20
98009685--98009761	39	2.0	38	82	9	95	32	3	2	61	1.28
98009604--98009759	10	16.2	10	69	20	84	32	4	2	60	1.30
98012618--98012655	19	2.0	20	89	5	60	44	13	2	39	1.57
98012927--98012952	6	4.3	6	100	0	52	46	0	0	53	1.00
98017817--98017867	5	9.6	5	83	8	57	74	1	0	23	0.92
98017811--98017850	18	2.2	18	86	8	55	70	0	0	30	0.88
98017819--98017863	23	2.0	23	86	8	65	73	2	0	24	0.95
98018290--98018606	92	3.4	90	76	9	280	26	20	30	22	1.98
98018376--98018507	47	2.8	46	80	7	149	27	21	31	20	1.98
98019346--98019472	55	2.3	55	82	2	139	21	23	29	25	1.99
98021220--98021244	6	4.2	6	100	0	50	48	0	0	52	1.00
98021222--98021283	12	5.2	12	71	24	51	61	3	0	35	1.12
98021935--98022014	19	4.3	19	87	9	121	36	8	18	36	1.82
98027691--98027758	13	5.4	12	72	19	50	83	0	13	2	0.75
98027691--98027751	21	2.8	22	80	7	79	83	0	13	3	0.76
98027691--98027751	23	2.9	22	90	9	92	83	0	13	3	0.76
98027694--98027758	23	3.0	22	84	13	89	83	0	13	3	0.77
98027694--98027757	22	3.0	21	82	15	78	82	0	14	3	0.78
98028761--98029303	44	12.4	44	74	12	422	28	14	28	28	1.95
98028849--98029163	87	3.6	85	76	11	341	27	15	28	29	1.96
98028756--98029239	175	2.8	176	93	0	826	29	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98029587--98029741	45	3.5	44	84	5	195	32	14	27	25	1.95
98029503--98029776	89	3.0	88	71	8	221	32	16	25	26	1.96
98030094--98030173	19	4.3	19	82	6	110	36	8	17	37	1.81
98036023--98036056	15	2.3	15	94	0	59	23	5	8	61	1.47
98039887--98040023	54	2.5	54	98	0	265	27	19	23	29	1.98
98040062--98040335	46	6.0	46	86	0	334	41	13	23	21	1.89
98040072--98040335	138	1.9	138	86	0	375	41	14	23	20	1.89
98040626--98040658	17	2.0	17	94	5	59	48	0	15	36	1.45
98042085--98042394	91	3.4	91	76	10	265	27	20	29	23	1.99
98042137--98042343	47	4.6	45	76	8	179	26	19	29	25	1.98
98043201--98043313	55	2.1	55	83	3	138	20	25	29	24	1.99
98043201--98043326	55	2.3	55	80	5	130	19	25	29	25	1.99
98045182--98045279	19	5.2	19	90	7	155	36	11	16	35	1.84
98045172--98045279	36	2.9	35	76	20	103	37	11	15	36	1.83
98045186--98045296	19	5.7	20	85	9	117	34	11	17	36	1.86
98050359--98050479	60	2.0	60	96	0	224	28	22	20	28	1.99
98050959--98051013	19	2.9	18	80	19	60	81	0	14	3	0.82
98050971--98051012	18	2.3	18	87	0	57	83	0	11	4	0.79
98051972--98052111	43	3.3	42	69	18	128	30	19	22	27	1.98
98051962--98052581	84	7.4	84	87	6	922	29	22	23	24	1.99
98051962--98052581	166	3.7	164	86	6	842	29	22	23	24	1.99
98052257--98052402	41	3.5	41	68	15	111	29	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98051962--98052581	250	2.5	250	94	0	1080	29	22	23	24	1.99
98052703--98052904	87	2.3	89	93	3	338	32	19	21	26	1.97
98052703--98052937	87	2.7	87	89	4	303	32	19	21	25	1.97
98053486--98053583	19	5.2	19	90	7	155	36	10	17	35	1.84
98053476--98053583	36	2.9	35	75	20	103	37	10	16	36	1.83
98055103--98055127	6	4.2	6	100	0	50	48	0	0	52	1.00
98057110--98057153	23	2.0	23	95	4	81	36	13	22	27	1.92
98057651--98057685	18	1.9	18	88	11	54	42	0	0	57	0.99
98058571--98058638	31	2.2	31	89	2	102	22	8	4	64	1.40
98059128--98059155	6	4.7	6	100	0	56	50	0	0	50	1.00
98062716--98062769	29	1.9	27	85	7	72	48	9	20	22	1.78
98063033--98063101	29	2.4	29	92	0	111	34	11	28	24	1.91
98063094--98063251	32	4.9	32	91	0	217	31	12	22	34	1.91
98063141--98063301	64	2.5	64	80	5	155	33	14	22	29	1.94
98066694--98066805	19	5.8	19	84	9	138	36	8	16	37	1.81
98066684--98066769	36	2.4	36	86	11	108	38	9	16	36	1.81
98066713--98066769	17	3.5	15	84	15	53	38	10	15	35	1.82
98066701--98066771	36	2.0	36	97	0	133	38	9	15	36	1.81
98073175--98073397	118	1.9	119	91	0	367	32	19	20	27	1.96
98073382--98073467	44	1.9	45	88	4	129	32	17	24	25	1.97
98073419--98074001	175	3.3	175	93	0	952	32	20	20	26	1.97
98074446--98074524	19	4.2	19	90	9	126	37	10	16	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98074436--98074523	36	2.4	36	80	17	119	38	10	15	35	1.82
98076163--98076187	6	4.2	6	100	0	50	48	0	0	52	1.00
98080190--98080223	6	5.7	6	92	0	50	44	0	0	55	0.99
98080189--98080223	18	1.9	18	94	0	61	42	0	0	57	0.99
98081960--98082032	35	2.1	35	100	0	146	49	12	10	27	1.74
98082566--98082673	26	4.2	26	92	2	173	33	7	23	36	1.83
98089531--98089637	26	4.2	25	91	5	178	32	7	23	36	1.83
98091119--98091170	25	2.0	26	85	3	70	38	23	13	25	1.91
98094079--98094142	26	2.4	26	78	5	65	31	20	14	34	1.92
98094247--98094554	27	11.2	27	70	18	185	18	24	23	34	1.97
98094244--98094554	54	5.7	54	72	13	260	18	24	23	34	1.96
98094276--98094614	167	2.0	167	96	1	626	18	23	24	33	1.96
98095610--98095689	41	1.9	42	82	7	101	21	28	17	32	1.96
98095883--98095954	28	2.6	28	86	0	90	29	27	11	31	1.91
98101146--98101174	13	2.2	13	100	0	58	27	0	34	37	1.57
98112133--98112187	23	2.4	23	90	0	83	38	21	16	23	1.93
98113888--98113939	25	2.1	25	85	0	68	40	17	7	34	1.78
98117314--98117341	14	2.0	14	100	0	56	35	7	21	35	1.81
98117881--98117944	22	3.0	21	76	4	65	42	14	12	31	1.82
98123133--98123234	26	3.9	26	97	0	177	36	25	5	32	1.80
98130016--98130073	29	2.0	29	93	0	98	39	12	36	12	1.80
98137344--98137474	47	2.8	47	87	2	174	34	27	14	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98137933--98137966	9	3.8	9	84	0	50	50	20	2	26	1.63
98141584--98141613	13	2.3	13	94	0	51	16	0	0	83	0.65
98141701--98141775	11	6.9	10	82	11	60	13	2	2	81	0.91
98141691--98141775	22	4.0	21	80	8	66	14	2	3	80	0.95
98141656--98141769	32	3.5	32	74	16	85	16	2	4	76	1.06
98141695--98141775	6	14.5	6	74	17	68	13	2	3	80	0.95
98141762--98141833	29	2.6	29	93	4	121	19	6	8	65	1.43
98147118--98147329	40	5.3	40	83	5	277	23	20	28	27	1.99
98147122--98147329	80	2.6	80	92	0	337	23	21	28	26	1.99
98149783--98149817	15	2.4	14	90	4	52	20	0	8	71	1.11
98154493--98154605	19	6.2	19	80	14	139	37	8	16	37	1.80
98154531--98154568	17	2.5	15	80	19	51	39	10	15	34	1.82
98154562--98154587	5	5.2	5	100	0	52	38	0	23	38	1.55
98156181--98156286	53	2.0	53	96	0	194	33	13	18	33	1.90
98159383--98159412	15	2.0	15	100	0	60	33	26	20	20	1.97
98161190--98161232	14	2.8	16	75	13	54	27	4	2	65	1.25
98162682--98162725	22	2.0	22	86	4	61	38	18	6	36	1.77
98162704--98162775	19	3.9	19	89	10	123	36	15	11	37	1.83
98162697--98162775	35	2.2	37	86	13	121	35	16	10	37	1.82
98162718--98162773	17	3.5	15	88	9	60	35	16	10	37	1.83
98164688--98164810	41	3.0	40	81	5	131	33	20	24	21	1.97
98164848--98164882	15	2.4	15	95	4	63	20	0	37	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98164843--98165008	7	22.7	7	72	11	84	19	1	36	42	1.59
98165623--98165654	16	2.0	16	93	0	55	75	3	0	21	0.95
98169390--98169442	27	2.0	27	82	14	65	28	5	3	62	1.35
98171548--98171595	20	2.4	19	82	6	60	45	12	12	29	1.78
98176121--98176160	20	2.0	21	90	5	64	50	12	10	27	1.72
98180755--98180797	7	6.0	7	83	5	50	62	0	4	32	1.15
98182477--98182528	27	2.0	27	85	10	74	23	0	0	76	0.78
98182737--98183331	44	13.5	44	87	0	830	28	26	14	30	1.95
98191150--98191174	12	2.1	12	100	0	50	20	32	16	32	1.94
98195209--98195244	7	5.0	7	86	6	54	66	0	2	30	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295