genome.fa.s2.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  115  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39499163--39499291	47	2.8	46	84	3	150	22	17	27	32	1.97
39499919--39499957	18	2.2	18	100	0	78	25	5	28	41	1.77
39500507--39500985	241	2.0	242	91	1	782	26	12	20	39	1.89
39503845--39504030	94	2.0	94	98	0	363	25	8	30	36	1.85
39506501--39506579	41	1.9	41	94	0	140	30	32	12	24	1.92
39506502--39506628	41	3.0	42	81	13	138	30	28	12	28	1.93
39514506--39514575	27	2.6	26	95	2	95	31	28	12	27	1.93
39514506--39514603	28	3.5	28	90	2	135	31	28	13	26	1.94
39515050--39515075	12	2.2	12	100	0	52	42	0	7	50	1.31
39517452--39517601	67	2.2	67	81	8	171	32	17	28	21	1.96
39517476--39517659	67	2.8	64	77	8	194	29	17	29	22	1.97
39519411--39519458	25	1.9	25	100	0	96	27	6	37	29	1.81
39534539--39534564	12	2.2	12	100	0	52	7	15	30	46	1.74
39534552--39534705	41	3.8	38	79	11	139	35	24	21	19	1.96
39534862--39534913	7	7.4	7	80	0	50	25	0	25	50	1.50
39534972--39535089	7	16.6	7	72	10	62	23	0	38	38	1.55
39535170--39535233	22	2.9	22	88	0	101	25	3	46	25	1.67
39535263--39535319	14	4.1	14	80	8	62	19	0	36	43	1.51
39535277--39535346	28	2.5	28	86	6	88	21	0	35	42	1.53
39535296--39535345	15	3.4	15	75	8	50	22	0	36	42	1.54
39535365--39535398	7	4.9	7	88	0	50	26	0	29	44	1.55
39535294--39535399	14	7.4	14	68	14	65	24	0	34	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39535608--39535807	75	2.7	73	90	2	312	54	8	9	29	1.60
39539461--39539501	19	2.2	19	86	4	57	21	2	4	70	1.18
39548591--39548621	16	1.9	16	93	0	53	48	12	22	16	1.80
39548836--39548936	29	3.5	29	90	0	166	26	12	29	30	1.93
39562034--39562090	27	2.1	27	96	0	105	26	19	15	38	1.92
39567865--39567960	47	2.0	47	91	0	156	33	8	28	30	1.86
39568443--39568493	25	2.0	25	100	0	102	47	19	9	23	1.79
39580039--39580072	13	2.5	13	95	4	59	67	0	0	32	0.91
39581184--39581237	13	4.2	13	80	0	54	18	29	29	22	1.97
39584071--39584112	18	2.3	18	88	8	59	19	42	26	11	1.85
39588245--39588377	56	2.4	56	89	0	203	33	23	14	28	1.94
39588356--39588433	31	2.5	31	89	0	129	26	28	16	28	1.97
39589029--39589059	15	2.1	15	93	0	53	54	25	0	19	1.44
39592176--39592206	16	1.9	16	93	0	53	12	19	22	45	1.84
39606412--39606453	21	2.0	21	81	9	50	23	14	4	57	1.56
39612093--39612276	40	4.6	40	87	4	212	23	22	28	26	1.99
39612173--39612323	40	3.8	39	80	6	117	24	22	28	24	1.99
39619402--39619447	21	2.3	20	78	14	51	45	17	6	30	1.73
39620283--39620326	22	2.0	22	90	0	70	56	2	0	40	1.11
39627448--39627491	21	2.0	22	95	4	81	36	9	29	25	1.86
39628845--39628895	18	2.7	18	77	22	52	23	35	3	37	1.74
39630862--39630916	26	2.1	26	86	0	74	32	21	23	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39643777--39643821	24	1.9	24	86	13	67	37	22	0	40	1.54
39648130--39648200	5	13.2	5	72	19	54	18	5	1	74	1.08
39648159--39648200	5	8.2	5	85	15	59	21	0	0	78	0.75
39648153--39648200	11	4.5	11	84	10	64	18	0	2	79	0.84
39648160--39648200	15	2.7	15	92	7	66	21	0	0	78	0.76
39648150--39648200	26	2.0	26	88	7	77	19	0	1	78	0.85
39648130--39648210	31	2.5	32	78	9	76	17	6	2	74	1.14
39654473--39654514	12	3.4	12	86	3	57	85	2	11	0	0.68
39658200--39658378	50	3.7	49	77	12	154	25	29	18	26	1.98
39658200--39658562	46	7.7	49	75	9	287	23	29	19	27	1.98
39658200--39658565	94	3.9	93	75	13	288	24	29	19	27	1.98
39658194--39658562	140	2.6	143	79	10	402	23	28	19	27	1.98
39660622--39660936	27	11.7	26	76	10	269	39	20	9	30	1.85
39660649--39660936	81	3.6	81	83	7	338	39	20	9	30	1.84
39660919--39660979	27	2.3	27	86	8	81	42	6	14	36	1.72
39663027--39663052	9	2.9	9	100	0	52	65	23	0	11	1.25
39664513--39664562	17	2.9	18	80	16	54	56	0	12	32	1.36
39665444--39665594	43	3.5	44	80	8	175	27	15	25	31	1.95
39665444--39665616	43	4.1	42	80	6	170	27	13	26	32	1.94
39667708--39667799	27	3.4	27	87	0	130	27	22	7	42	1.80
39667812--39667953	54	2.6	54	83	4	135	42	21	9	27	1.83
39667831--39668067	27	8.7	27	79	5	172	40	19	8	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39668971--39669040	25	2.8	25	91	0	104	27	24	22	25	2.00
39668996--39669067	25	3.0	24	80	13	76	29	22	22	26	1.99
39669260--39669342	31	2.7	30	89	7	123	31	16	24	27	1.97
39672385--39672415	14	2.2	14	94	0	53	16	0	12	70	1.16
39672422--39672451	13	2.2	14	94	5	53	36	20	0	43	1.52
39687715--39687797	4	20.8	4	100	0	166	50	24	0	25	1.49
39689086--39689123	14	2.9	13	81	11	51	18	13	10	57	1.63
39694928--39695096	46	3.7	45	75	10	148	26	30	17	25	1.97
39694927--39695137	94	2.3	90	81	9	230	25	28	18	27	1.98
39697007--39697173	43	3.9	43	76	6	160	32	25	13	28	1.94
39723687--39723878	40	4.8	40	80	5	235	28	26	20	24	1.99
39726557--39726616	30	2.0	31	83	3	77	40	5	25	30	1.77
39727327--39727474	64	2.2	68	78	10	160	31	17	29	21	1.96
39733347--39733540	47	4.1	47	90	0	289	32	10	29	26	1.90
39733376--39733447	22	3.1	22	64	24	58	33	13	29	23	1.93
39733421--39733496	23	3.2	25	62	24	63	28	13	34	23	1.92
39733742--39733813	37	1.9	37	88	5	110	22	20	30	26	1.98
39743341--39743468	46	2.8	46	90	1	204	34	28	17	18	1.94
39748520--39748679	79	2.0	80	92	3	270	29	30	19	21	1.97
39754923--39755024	20	5.1	20	65	9	64	34	18	29	17	1.94
39754923--39755126	40	5.1	40	84	1	239	35	18	30	15	1.92
39754979--39755084	20	5.3	20	67	8	63	34	18	33	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39756915--39757019	43	2.4	43	82	3	113	35	20	15	28	1.93
39772681--39772744	31	2.1	31	84	0	83	15	31	31	21	1.95
39773955--39773985	16	1.9	16	93	0	53	35	22	0	41	1.54
39773952--39773991	20	2.0	20	85	0	53	37	22	0	40	1.54
39774188--39774432	55	4.6	54	75	8	184	22	23	17	36	1.95
39781317--39781530	40	5.4	40	91	2	326	25	27	23	24	2.00
39789350--39789567	40	5.5	40	90	2	325	25	27	23	23	2.00
39795633--39795823	101	1.9	101	83	7	253	31	12	25	30	1.93
39799120--39799183	31	2.0	32	84	3	85	18	23	23	34	1.96
39805161--39805224	33	2.0	32	84	3	83	20	25	20	34	1.96
39805186--39805245	27	2.3	26	85	2	75	21	21	20	36	1.95
39809098--39809204	51	2.1	52	89	1	162	25	15	28	30	1.96
39811038--39811078	20	2.0	20	95	0	73	21	39	29	9	1.86
39817178--39817355	50	3.6	50	83	3	198	30	27	16	25	1.97
39817607--39817660	27	2.0	27	85	0	72	38	14	7	38	1.75
39819115--39819220	42	2.5	43	76	4	108	22	14	29	33	1.93
39826031--39826131	25	4.0	25	72	7	82	23	21	24	29	1.99
39827688--39827856	41	4.2	40	76	7	135	26	29	20	23	1.99
39827714--39827856	41	3.5	40	81	5	146	26	29	20	23	1.99
39834759--39834863	37	2.8	37	95	0	183	26	31	18	23	1.97
39835069--39835262	47	4.1	47	89	0	280	27	29	10	32	1.90
39835162--39835233	22	3.1	22	64	24	58	23	29	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39854747--39854847	40	2.6	39	79	6	98	23	27	24	23	2.00
39854775--39854996	40	5.6	40	88	1	279	26	26	22	24	2.00
39859041--39859242	40	5.1	40	85	4	259	23	24	28	23	1.99
39859037--39859230	39	4.9	40	85	5	259	24	23	28	23	2.00
39859037--39859242	79	2.6	79	91	3	317	24	23	28	23	2.00
39867109--39867312	40	5.1	40	85	2	250	23	25	28	23	1.99
39867105--39867312	80	2.6	80	91	3	321	24	24	27	23	2.00
39876471--39876544	6	12.5	6	82	5	89	16	4	1	78	0.97
39876491--39876564	6	13.8	5	78	16	53	17	2	1	78	0.94
39876470--39876564	41	2.3	41	82	12	113	17	4	1	76	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295