genome.fa.s2.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  129  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44269926--44270002	21	3.7	21	84	3	75	16	1	35	46	1.56
44273648--44273764	43	3.1	34	77	21	126	50	13	0	35	1.48
44273622--44273712	27	3.1	27	74	19	92	51	12	0	36	1.39
44273700--44273866	9	19.0	9	71	11	89	45	17	1	35	1.56
44273665--44273849	43	4.3	43	91	1	280	47	16	1	35	1.54
44273665--44273877	86	2.5	86	84	4	223	46	16	1	35	1.56
44278939--44278967	14	2.1	14	93	6	51	34	0	10	55	1.34
44279659--44279745	31	2.7	33	80	7	106	17	6	17	58	1.59
44279837--44279973	43	3.2	43	76	6	143	25	27	17	29	1.97
44288577--44288693	41	2.8	42	73	8	112	25	17	25	30	1.97
44288863--44288900	18	2.1	19	90	5	60	50	0	15	34	1.45
44298665--44298697	17	1.9	17	93	0	57	18	24	39	18	1.92
44299158--44299234	40	1.9	40	91	0	127	12	15	32	38	1.86
44302389--44302434	24	1.9	24	90	0	74	36	13	10	39	1.79
44307731--44307781	20	2.6	20	76	14	61	45	11	7	35	1.70
44318037--44318070	18	1.9	17	88	5	50	26	29	29	14	1.95
44319609--44319647	6	6.5	6	81	0	51	56	2	25	15	1.52
44319793--44319883	25	3.7	25	76	2	94	39	8	16	35	1.80
44319793--44319856	24	2.6	24	80	2	83	39	7	17	35	1.78
44330362--44330392	12	2.6	12	100	0	62	6	19	48	25	1.72
44348409--44348525	34	3.5	33	80	8	110	20	23	13	42	1.87
44348409--44348559	33	4.5	34	80	6	137	21	23	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44348419--44348544	67	1.9	67	84	0	171	19	22	13	44	1.86
44348418--44348559	67	2.1	67	80	2	160	21	23	12	42	1.87
44350217--44350277	26	2.3	26	85	0	77	39	9	14	36	1.80
44361033--44361071	13	3.0	13	85	10	53	43	15	20	20	1.88
44362893--44362997	53	2.0	53	98	0	201	32	22	20	24	1.98
44370771--44370795	13	1.9	13	100	0	50	44	0	8	48	1.32
44376170--44376250	6	13.7	6	80	13	64	19	1	1	77	0.90
44376171--44376250	5	15.8	5	82	14	87	20	1	1	77	0.91
44376186--44376250	26	2.6	25	88	11	89	20	1	0	78	0.83
44383588--44383619	3	10.7	3	100	0	64	34	0	0	65	0.93
44383624--44383667	15	2.9	15	90	6	63	29	18	0	52	1.46
44384373--44384414	20	2.0	22	86	9	61	45	0	0	54	0.99
44384422--44384463	13	2.9	14	80	13	50	54	0	0	45	0.99
44384426--44384462	16	2.3	16	86	13	58	59	0	0	40	0.97
44387949--44387983	6	5.8	6	93	0	61	34	0	31	34	1.58
44390729--44390807	33	2.4	33	77	8	81	45	18	21	13	1.84
44395263--44395303	21	2.0	20	85	4	55	34	7	12	46	1.69
44398005--44398064	27	2.2	27	84	0	75	23	31	10	35	1.88
44398155--44398227	27	2.7	27	80	0	74	21	20	16	41	1.90
44400240--44400421	98	1.9	98	91	2	303	28	23	9	39	1.85
44402389--44402427	11	3.6	11	79	6	53	66	7	0	25	1.18
44413898--44413930	16	2.1	15	94	5	57	24	9	0	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44417402--44417443	15	2.8	15	78	10	50	38	0	7	54	1.28
44425994--44426053	30	2.0	30	86	0	84	43	5	23	28	1.74
44428230--44428304	3	24.7	3	75	2	60	2	33	1	62	1.17
44430312--44430677	48	7.6	48	74	7	296	28	19	28	23	1.98
44430299--44430677	96	3.9	96	84	2	467	28	18	28	24	1.98
44437272--44437321	24	2.1	24	96	0	91	28	8	18	46	1.77
44438165--44438483	48	6.6	49	78	6	321	27	18	29	24	1.98
44438150--44438483	96	3.5	94	83	5	377	27	18	29	24	1.98
44438165--44438484	144	2.2	143	82	3	383	27	18	29	24	1.98
44441463--44441517	28	1.9	29	85	10	78	36	18	21	23	1.95
44445639--44445742	45	2.3	45	86	3	138	42	16	17	24	1.88
44445955--44446035	40	2.0	40	82	0	99	40	14	7	37	1.74
44446342--44446400	13	4.7	12	80	15	59	10	10	1	77	1.05
44446348--44446414	27	2.5	27	79	13	75	14	8	1	74	1.13
44446362--44446408	13	3.5	13	77	11	51	14	8	0	76	1.01
44446681--44446746	20	3.2	20	71	18	55	50	1	1	46	1.20
44452857--44452963	45	2.4	45	87	3	153	42	18	16	21	1.89
44453574--44453640	27	2.5	27	78	9	73	13	7	2	76	1.12
44453575--44453618	18	2.4	18	84	3	52	11	6	2	79	1.01
44453568--44453630	22	2.9	21	77	11	56	9	7	3	79	1.04
44453908--44453973	20	3.2	20	71	18	55	50	1	1	46	1.20
44455379--44455422	19	2.4	19	88	3	72	36	0	13	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44456762--44456833	31	2.3	30	79	13	76	51	1	4	43	1.29
44459680--44459737	28	2.1	28	100	0	116	37	6	32	22	1.81
44470006--44470065	26	2.3	26	82	0	75	33	35	13	18	1.89
44476888--44476921	17	2.0	17	94	0	59	32	29	0	38	1.58
44481272--44481312	20	2.0	20	95	0	73	43	17	14	24	1.86
44486801--44486826	3	8.7	3	100	0	52	34	0	0	65	0.93
44487546--44487574	7	4.3	7	95	4	51	51	0	0	48	1.00
44488798--44488847	26	1.9	26	87	0	73	32	18	10	40	1.83
44491494--44491591	27	3.5	28	88	5	128	32	28	13	25	1.93
44495979--44496020	19	2.2	19	100	0	84	35	23	9	30	1.87
44496002--44496089	28	3.2	28	88	7	119	34	25	13	27	1.93
44501642--44501671	16	1.9	16	93	6	53	43	6	6	43	1.57
44503081--44503121	15	2.7	15	92	0	64	53	4	12	29	1.58
44515068--44515208	40	3.5	40	84	0	183	33	16	29	21	1.95
44517505--44517569	31	2.1	31	94	0	112	32	32	15	20	1.93
44521467--44521563	41	2.3	41	81	6	124	35	14	20	29	1.92
44521633--44521759	41	3.1	41	77	0	128	33	18	19	27	1.96
44522029--44522126	22	4.5	21	72	16	76	45	28	3	22	1.67
44522048--44522133	21	4.0	21	73	14	68	46	25	2	25	1.65
44524539--44524596	29	2.0	29	96	0	107	20	27	5	46	1.72
44528809--44528959	28	5.4	28	92	1	223	25	11	28	33	1.92
44534956--44535000	17	2.7	16	79	6	54	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44536943--44536988	21	2.2	21	84	0	56	28	0	23	47	1.52
44536998--44537096	7	13.9	7	70	12	58	19	1	35	44	1.57
44536998--44537094	15	6.8	14	78	12	76	18	1	36	44	1.57
44537040--44537117	29	2.7	30	84	4	97	20	1	39	38	1.61
44537043--44537117	7	10.4	7	73	11	53	21	1	38	38	1.62
44537064--44537116	22	2.4	22	80	0	61	20	1	39	37	1.64
44537031--44537117	14	6.0	15	78	4	63	20	2	37	39	1.66
44537135--44537180	14	3.4	14	71	17	51	26	2	32	39	1.68
44537275--44537334	29	2.1	28	84	3	75	15	1	33	50	1.54
44537330--44537400	28	2.5	27	80	15	90	28	1	30	39	1.65
44537310--44537356	21	2.2	21	96	0	85	25	0	31	42	1.55
44537886--44537910	11	2.3	11	100	0	50	8	60	8	24	1.52
44539810--44540129	100	3.2	99	70	15	310	35	6	3	55	1.42
44539664--44540128	208	2.2	208	95	0	833	35	6	3	54	1.44
44540148--44540412	9	30.8	9	72	15	147	46	14	1	36	1.56
44540174--44540285	30	3.6	30	77	13	136	45	14	1	38	1.55
44540143--44540364	64	3.5	64	85	6	265	46	15	1	36	1.56
44540216--44540348	48	2.8	48	93	3	216	47	14	1	36	1.53
44540152--44540412	112	2.3	112	92	1	436	46	14	1	37	1.56
44540280--44540397	30	3.8	30	79	17	141	47	14	1	36	1.54
44540263--44540418	64	2.4	64	95	3	278	47	15	1	35	1.54
44545459--44545487	13	2.1	14	93	6	51	37	0	6	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44545893--44545950	21	2.8	21	79	10	64	31	18	44	5	1.72
44546203--44546299	31	3.1	31	92	0	158	17	9	21	51	1.73
44548705--44548733	2	14.5	2	100	0	58	51	0	0	48	1.00
44554782--44554833	26	2.0	26	96	0	95	36	26	11	25	1.90
44556288--44556370	32	2.7	29	80	10	87	49	3	7	39	1.48
44559663--44560043	48	8.0	48	80	4	410	24	29	19	26	1.99
44559663--44560043	96	4.0	96	88	3	527	24	29	19	26	1.99
44562546--44562586	19	2.1	20	86	4	57	48	21	7	21	1.74
44568211--44568393	77	2.3	81	83	8	234	25	27	22	24	2.00
44568192--44568393	40	5.1	40	83	8	236	24	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295