genome.fa.s2.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  180  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61771035--61771104	16	4.4	16	87	0	104	31	34	2	31	1.73
61771301--61771370	16	4.4	16	87	0	104	31	34	2	31	1.73
61771012--61771550	266	2.0	266	100	0	1078	26	31	12	28	1.93
61772044--61772068	3	8.3	3	100	0	50	64	0	0	36	0.94
61772122--61772146	12	2.1	12	100	0	50	52	8	0	40	1.31
61773250--61773278	15	1.9	15	100	0	58	27	6	17	48	1.72
61774677--61774733	29	2.0	28	89	3	87	21	19	26	33	1.97
61778411--61778475	27	2.4	27	92	0	103	43	18	13	24	1.87
61782242--61782321	40	2.0	40	95	0	142	27	12	15	45	1.82
61783134--61783194	31	2.1	27	82	11	68	34	0	18	47	1.49
61821448--61821625	67	2.8	64	77	12	193	23	30	16	29	1.97
61822371--61822431	30	2.0	30	87	0	86	29	24	4	40	1.76
61826673--61826877	103	2.0	103	99	0	401	33	12	20	34	1.89
61829502--61829534	14	2.2	16	89	10	52	24	0	18	57	1.40
61830619--61830746	45	2.8	45	85	4	168	21	14	29	33	1.94
61830648--61830796	45	3.4	45	81	6	146	21	14	30	33	1.93
61832062--61832157	48	2.0	48	100	0	192	33	4	20	41	1.72
61832064--61832143	27	3.2	27	59	20	64	32	5	20	42	1.73
61833015--61833083	30	2.3	30	87	7	97	33	1	42	23	1.63
61833256--61833313	28	2.1	28	86	0	80	12	24	17	46	1.81
61834020--61834049	14	2.1	14	93	0	51	46	36	0	16	1.47
61834042--61834087	23	2.0	23	84	12	60	43	10	8	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61834049--61834093	23	2.0	23	82	8	56	37	13	11	37	1.80
61836895--61836941	22	2.1	22	84	7	60	53	2	10	34	1.48
61838383--61838467	27	3.2	26	88	8	125	37	23	24	14	1.92
61846223--61846334	54	2.1	54	81	6	129	35	22	24	17	1.95
61846223--61846334	27	4.2	26	81	10	109	35	22	24	17	1.95
61849385--61849414	14	2.1	15	93	6	53	60	0	33	6	1.23
61857860--61857980	43	2.9	42	81	4	136	26	17	23	33	1.96
61859206--61859316	55	2.0	55	94	0	195	45	24	13	17	1.84
61859926--61860040	29	4.0	29	83	6	128	27	26	15	29	1.96
61865545--61865602	29	2.0	29	89	0	89	36	1	13	48	1.53
61871173--61871235	30	2.1	30	84	0	81	50	14	17	17	1.78
61871173--61871235	15	4.2	15	79	0	72	50	14	17	17	1.78
61881227--61881278	15	3.2	15	75	19	59	42	0	1	55	1.10
61881278--61881323	16	2.5	19	73	23	53	43	2	6	47	1.41
61898121--61898152	15	2.1	15	100	0	64	18	25	18	37	1.94
61898405--61898472	30	2.3	30	82	5	84	27	30	19	22	1.97
61898559--61898602	23	1.9	23	85	0	61	38	29	13	18	1.89
61904944--61905028	32	2.7	32	92	0	143	27	27	20	25	1.99
61913476--61913536	30	2.0	30	87	0	86	40	3	24	31	1.71
61914001--61914316	64	4.8	66	79	7	247	31	14	28	24	1.95
61914069--61914316	64	3.8	64	79	6	259	31	14	29	24	1.95
61917052--61917133	41	2.0	41	100	0	164	41	9	24	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61918070--61918128	30	2.0	30	86	0	82	40	5	27	27	1.77
61918592--61918908	64	4.9	64	79	6	282	31	14	28	24	1.95
61926572--61926683	39	2.9	39	81	7	122	36	2	51	8	1.47
61927114--61927181	32	2.1	32	89	5	102	16	29	2	51	1.59
61933764--61933809	21	2.2	21	88	7	67	32	21	23	21	1.98
61940280--61940376	48	2.0	48	95	0	176	39	8	28	23	1.84
61942079--61942119	19	2.1	20	90	4	66	43	4	9	41	1.59
61947324--61947401	37	2.1	37	92	0	129	24	10	29	35	1.88
61948090--61948146	26	2.2	26	83	0	69	26	10	21	42	1.85
61950010--61950187	27	6.6	27	82	3	187	26	15	29	29	1.96
61950011--61950161	82	1.9	81	87	4	223	26	15	28	29	1.96
61950007--61950187	82	2.2	81	81	2	211	26	15	28	29	1.96
61952610--61952684	18	4.2	18	80	0	87	38	16	21	24	1.92
61953008--61953318	27	11.5	27	80	5	326	40	19	14	25	1.89
61953003--61953318	54	5.9	54	86	1	386	40	19	14	25	1.89
61953003--61953315	81	3.9	81	85	1	405	41	19	14	24	1.89
61963813--61963899	27	3.2	27	90	0	138	36	20	13	28	1.91
61963990--61964025	17	2.0	19	89	10	58	19	38	27	13	1.90
61969221--61969349	47	2.7	48	85	7	165	24	17	32	24	1.97
61970485--61970524	21	2.0	21	90	5	64	12	40	27	20	1.88
61976473--61976661	38	4.9	38	81	6	184	22	21	24	30	1.99
61976482--61976661	76	2.3	78	83	4	231	23	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61990539--61990708	47	3.6	48	82	7	163	28	19	27	24	1.99
61993894--61993934	20	2.0	20	95	0	73	51	12	9	26	1.70
62016759--62016861	37	2.8	37	98	0	197	25	31	20	23	1.98
62016905--62017277	48	7.8	48	93	0	611	31	27	6	34	1.82
62025451--62025574	27	4.7	26	75	14	83	40	22	8	29	1.82
62025475--62025536	27	2.3	27	88	5	90	43	20	4	30	1.73
62025597--62026005	27	15.2	27	86	1	525	29	22	8	40	1.82
62026242--62026293	27	2.0	26	84	3	68	17	26	21	34	1.95
62026332--62026391	27	2.3	27	85	2	77	21	23	20	35	1.96
62026522--62026625	31	3.2	31	77	15	109	24	20	8	47	1.78
62026538--62026625	37	2.4	37	90	0	140	22	20	9	47	1.78
62026538--62026625	18	5.1	18	67	20	71	22	20	9	47	1.78
62026566--62026646	6	13.3	6	72	12	58	20	17	11	50	1.76
62026541--62026646	12	8.7	12	70	12	72	22	18	9	49	1.76
62027786--62027827	21	2.0	21	86	4	59	45	7	19	28	1.76
62037232--62037333	27	3.7	27	81	2	114	26	14	17	41	1.88
62037231--62037335	55	1.9	55	88	0	156	27	14	17	40	1.88
62045740--62045790	25	2.0	25	81	11	59	50	3	15	29	1.62
62049800--62049946	75	2.0	74	79	4	161	32	12	9	44	1.75
62054097--62054228	45	2.9	45	90	0	210	27	28	21	22	1.99
62061107--62061238	45	2.9	45	90	2	212	27	27	22	22	1.99
62067238--62067466	46	4.8	46	74	16	207	23	20	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62067249--62067357	51	2.1	51	93	0	182	23	17	27	31	1.97
62071808--62071951	46	3.1	45	72	21	120	29	29	19	22	1.98
62075736--62075854	43	2.8	42	75	2	112	28	12	25	33	1.92
62077028--62077076	21	2.3	21	100	0	98	20	38	28	12	1.89
62078743--62078816	30	2.5	30	86	0	103	29	27	10	32	1.90
62084306--62084400	40	2.4	40	89	7	140	33	16	22	27	1.95
62084465--62084498	17	2.0	17	100	0	68	41	17	11	29	1.85
62084592--62084654	20	3.2	20	70	20	69	28	11	25	34	1.90
62084586--62084665	39	2.1	39	95	0	142	32	11	21	35	1.89
62088187--62088278	24	3.8	24	94	1	157	34	5	38	21	1.77
62088538--62088623	43	2.0	43	97	0	163	25	24	10	39	1.87
62093591--62093746	27	5.7	27	78	6	154	27	28	17	26	1.98
62093570--62093747	54	3.3	55	78	10	195	28	28	16	26	1.97
62093591--62093746	82	1.9	81	84	3	206	27	28	17	26	1.98
62099310--62099383	24	3.0	24	86	2	112	36	4	37	21	1.73
62100980--62101157	46	3.8	46	78	4	196	28	28	21	21	1.99
62100988--62101159	93	1.8	93	91	0	281	27	29	22	21	1.99
62106033--62106204	93	1.8	93	92	0	290	29	29	20	20	1.98
62106025--62106200	46	3.8	46	77	10	187	30	29	19	20	1.97
62106076--62106219	46	3.1	44	69	21	107	29	27	20	22	1.98
62115573--62115726	41	3.8	41	79	2	193	21	22	27	28	1.99
62117810--62117857	10	4.7	10	80	12	53	64	2	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62117820--62117855	12	3.3	11	88	11	56	66	0	0	33	0.92
62119784--62119829	23	2.0	24	82	4	58	52	26	4	17	1.63
62120358--62120486	42	3.0	42	83	10	147	32	24	17	24	1.97
62124670--62124753	43	2.0	43	92	0	141	26	32	19	22	1.97
62126160--62126186	12	2.2	12	100	0	54	25	44	22	7	1.79
62130234--62130296	26	2.3	26	83	5	72	33	25	11	30	1.90
62130402--62130500	27	3.6	27	79	6	110	18	23	23	35	1.96
62130403--62130509	54	2.0	54	85	3	144	17	22	22	37	1.94
62132814--62132932	39	3.1	39	91	0	193	27	23	21	27	1.99
62140975--62141132	39	4.1	39	91	0	253	27	25	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295