genome.fa.s2.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  179  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61481279--61481447	73	2.3	73	90	4	252	30	23	20	26	1.99
61489442--61489480	20	2.0	20	89	0	60	38	10	23	28	1.87
61489460--61489497	16	2.4	16	95	4	69	36	13	18	31	1.89
61489547--61489836	24	12.0	24	89	4	422	29	21	21	27	1.98
61489547--61489836	73	4.0	72	88	4	422	29	21	21	27	1.98
61489546--61489836	97	3.0	96	88	5	451	29	21	20	27	1.99
61491708--61491831	46	2.7	47	79	16	152	32	19	26	21	1.97
61491891--61492021	49	2.7	49	85	0	172	29	19	28	22	1.98
61496427--61497250	419	2.0	419	84	1	1080	30	16	30	22	1.96
61502644--61502733	40	2.3	39	81	12	96	55	0	6	37	1.26
61502796--61502853	26	2.2	27	85	11	77	56	0	6	36	1.26
61504231--61504399	92	1.8	92	93	2	295	21	21	29	27	1.98
61504235--61504404	45	3.7	45	79	13	204	21	21	28	28	1.99
61509771--61509890	56	2.1	56	98	0	231	45	9	23	22	1.81
61511015--61511197	79	2.3	81	83	7	223	24	22	27	24	2.00
61511016--61511199	40	4.6	40	82	9	207	24	22	28	24	2.00
61511068--61511232	79	2.1	79	83	6	201	26	21	27	24	1.99
61517663--61517780	54	2.1	56	96	3	222	44	9	23	22	1.81
61518908--61519131	79	2.8	79	85	5	292	24	21	28	25	1.99
61518908--61519131	40	5.7	40	85	6	287	24	21	28	25	1.99
61518947--61519164	79	2.8	79	83	5	237	26	20	27	25	1.99
61522828--61522996	92	1.8	92	91	2	277	21	20	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61522832--61523001	45	3.7	45	78	13	186	22	20	28	28	1.99
61525922--61526477	206	2.7	204	87	2	781	29	21	17	31	1.96
61535123--61535298	46	3.8	46	79	12	216	20	21	29	28	1.98
61535120--61535291	93	1.8	93	96	0	317	20	21	29	27	1.98
61542615--61542786	46	3.7	46	77	13	190	19	19	30	29	1.97
61542608--61542778	93	1.8	93	91	0	279	19	21	30	28	1.98
61545462--61545611	67	2.2	67	81	8	171	32	17	28	21	1.96
61545486--61545669	67	2.8	64	77	8	194	29	17	29	22	1.97
61549170--61549340	93	1.8	93	94	0	306	28	28	21	21	1.99
61549165--61549337	46	3.7	46	79	13	210	28	27	21	21	1.99
61552797--61552854	24	2.4	25	80	8	75	63	5	0	31	1.16
61568864--61568911	15	3.3	15	73	5	53	29	0	27	43	1.55
61568858--61568901	14	3.1	14	74	6	52	27	0	34	38	1.57
61568858--61568917	29	2.1	29	93	0	102	28	0	30	41	1.56
61570546--61570646	28	3.6	28	75	2	103	26	7	33	31	1.85
61576539--61576584	19	2.5	18	79	6	56	34	4	21	39	1.73
61582308--61582405	39	2.5	39	89	0	160	23	26	24	25	2.00
61590165--61590262	39	2.5	39	93	0	160	24	28	22	24	1.99
61597863--61598119	55	4.8	55	73	9	214	36	16	24	22	1.94
61598310--61598340	16	1.9	16	93	0	53	41	0	22	35	1.54
61600866--61600947	30	2.7	30	96	0	155	15	29	40	14	1.87
61600892--61601249	198	1.8	198	87	2	540	25	27	29	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61601357--61601428	31	2.3	29	82	13	90	25	2	0	72	0.98
61601358--61601420	33	2.0	31	87	6	90	26	1	0	71	0.95
61603880--61603936	27	2.3	24	80	16	64	38	29	10	21	1.87
61603890--61603943	27	2.0	27	100	0	108	37	29	11	22	1.89
61605485--61605559	14	4.9	16	70	20	63	32	9	0	58	1.30
61615954--61616127	46	3.8	45	79	10	181	22	20	28	28	1.98
61615948--61616119	93	1.8	93	89	0	272	22	20	29	28	1.98
61618838--61618999	43	3.8	42	75	13	120	26	14	27	31	1.95
61636264--61636303	6	6.5	6	82	5	53	17	5	0	77	0.94
61637311--61637485	96	1.8	96	96	0	323	30	22	6	40	1.80
61641801--61641854	27	2.0	27	82	7	65	37	20	22	20	1.95
61642332--61642367	17	2.1	18	89	5	56	25	38	22	13	1.91
61643633--61643666	18	1.9	18	88	5	52	29	14	14	41	1.86
61644770--61644823	28	1.9	28	85	7	74	33	27	9	29	1.88
61647283--61647308	13	2.0	13	100	0	52	46	0	0	53	1.00
61647497--61647541	24	1.9	24	95	4	83	64	6	2	26	1.30
61647497--61647548	24	2.2	24	89	6	79	63	5	1	28	1.28
61648115--61648140	11	2.4	11	100	0	52	19	11	7	61	1.53
61655747--61655821	20	3.7	20	75	10	80	26	12	28	33	1.92
61666311--61666356	19	2.5	19	92	3	76	17	30	39	13	1.87
61666605--61666709	42	2.5	42	90	3	158	29	22	16	31	1.96
61671274--61671310	17	2.1	18	90	5	58	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61689768--61689831	31	2.1	31	93	0	110	23	23	15	37	1.93
61690039--61690118	23	3.4	24	91	6	128	27	23	20	28	1.99
61690177--61690233	9	5.9	9	73	15	51	35	21	8	35	1.84
61690165--61690235	20	3.5	20	94	0	124	32	21	11	35	1.89
61690170--61690224	11	5.4	11	70	16	55	30	20	12	36	1.90
61690272--61690319	25	1.9	25	91	0	78	25	14	25	35	1.94
61696571--61696611	18	2.3	18	95	0	73	9	51	24	14	1.72
61697837--61697897	31	2.0	31	83	0	77	26	22	14	36	1.93
61698091--61698183	23	4.0	23	84	7	116	26	23	22	26	2.00
61698241--61698297	9	5.9	9	73	15	51	35	21	8	35	1.84
61698229--61698299	20	3.5	20	94	0	124	32	21	11	35	1.89
61698234--61698288	11	5.4	11	70	16	55	30	20	12	36	1.90
61701494--61701526	16	2.1	16	100	0	66	63	6	12	18	1.48
61702678--61702719	21	2.0	21	90	9	68	57	23	2	16	1.51
61712970--61713187	47	4.7	45	78	8	172	24	30	19	25	1.98
61716473--61716523	26	2.0	26	92	0	84	33	27	7	31	1.85
61717876--61717916	20	2.0	20	90	0	64	12	26	39	21	1.89
61725113--61725157	20	2.2	20	96	0	81	13	26	37	22	1.91
61726591--61726673	41	2.0	41	97	0	157	42	21	3	32	1.70
61728831--61728953	27	4.6	27	79	10	110	39	22	9	28	1.86
61728852--61728984	27	5.0	27	80	8	112	38	21	10	29	1.87
61728823--61728982	54	3.0	54	78	5	173	38	23	10	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61728938--61729108	83	2.1	81	80	2	189	34	18	8	38	1.81
61728976--61729332	27	13.1	27	84	2	358	31	19	7	42	1.78
61728976--61729332	81	4.4	81	83	2	412	31	19	7	42	1.78
61729660--61729719	27	2.3	27	85	2	77	21	23	20	35	1.96
61729838--61729917	31	2.6	31	85	0	106	20	17	12	50	1.78
61729838--61729916	6	12.8	6	72	15	63	18	17	12	50	1.77
61734180--61734502	27	12.0	27	80	6	273	39	18	9	31	1.83
61740873--61740964	27	3.4	27	86	1	123	26	18	17	38	1.93
61740873--61740976	27	3.9	26	82	8	102	25	17	19	37	1.93
61740951--61741014	32	2.0	31	93	3	110	34	17	14	34	1.89
61740924--61741014	27	3.0	32	84	9	113	31	16	16	35	1.91
61744106--61744159	20	2.7	20	82	5	65	11	27	37	24	1.89
61752136--61752172	16	2.3	16	100	0	74	54	10	8	27	1.63
61754991--61755020	15	1.9	16	93	6	53	26	33	6	33	1.83
61759685--61759745	29	2.1	30	96	3	115	49	13	8	29	1.70
61763055--61763183	7	18.1	7	73	12	84	38	41	0	20	1.52
61763146--61763188	14	3.0	14	86	3	50	41	37	0	20	1.53
61763228--61763272	14	3.2	14	80	0	54	51	22	0	26	1.49
61763448--61763687	41	5.9	41	82	4	254	21	21	22	35	1.96
61763466--61763687	122	1.8	122	85	3	313	21	21	21	36	1.96
61765553--61765631	31	2.5	31	89	0	131	22	24	18	34	1.97
61765836--61765919	25	3.4	25	88	6	91	23	23	23	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61765849--61765919	25	2.8	25	95	2	124	23	23	26	25	2.00
61769056--61769085	13	2.3	13	94	0	51	50	6	13	30	1.67
61770573--61770758	59	3.1	58	70	14	189	40	1	6	51	1.37
61770647--61770681	18	2.0	18	94	5	63	42	0	0	57	0.99
61770654--61770699	18	2.8	17	83	9	51	45	0	0	54	0.99
61770666--61770722	26	2.2	25	81	3	69	40	0	3	56	1.17
61770570--61770816	120	2.0	121	95	0	442	40	1	5	52	1.32
61770769--61770804	18	2.0	18	100	0	72	33	0	0	66	0.92
61770773--61770812	18	2.2	18	86	0	53	42	0	0	57	0.98
61770962--61771056	45	2.1	44	86	1	127	34	27	6	31	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295