genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  98  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31532724--31532781	5	11.6	5	80	14	50	0	32	0	67	0.91
31532724--31532782	20	2.8	20	92	7	91	0	32	0	67	0.91
31532731--31532783	25	2.1	25	83	13	65	0	30	0	69	0.88
31540634--31540684	19	2.7	18	80	14	50	60	1	3	33	1.26
31541235--31541338	52	2.0	52	100	0	208	36	3	15	44	1.65
31541519--31541581	24	2.5	25	82	12	67	34	1	1	61	1.15
31541657--31541694	19	2.0	19	85	10	51	55	2	0	42	1.14
31541931--31542016	45	1.9	45	81	9	104	44	5	3	46	1.44
31545105--31545144	19	2.0	21	85	9	57	32	0	15	52	1.43
31545507--31545742	50	4.7	50	80	3	276	25	18	26	29	1.98
31545504--31545742	101	2.4	100	83	2	291	25	18	26	29	1.98
31548791--31548902	43	2.6	43	95	0	206	28	33	27	10	1.90
31548895--31549002	38	2.8	38	85	0	144	30	27	22	19	1.98
31553367--31553440	29	2.6	29	86	4	96	27	16	31	25	1.96
31557522--31557676	43	3.6	43	91	0	247	30	30	25	12	1.93
31557669--31557774	38	2.8	38	88	0	140	28	25	22	23	1.99
31567114--31567284	93	1.8	93	87	2	254	29	28	19	22	1.98
31571347--31571447	27	3.8	26	80	3	103	20	25	20	32	1.97
31571555--31571610	28	2.0	28	86	6	78	17	21	25	35	1.95
31572649--31572761	29	3.9	30	80	7	128	28	30	14	27	1.95
31572651--31572761	58	1.9	57	83	5	143	27	29	14	27	1.95
31575022--31575219	43	4.6	43	91	0	324	31	32	24	11	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31575009--31575240	129	1.8	128	89	1	360	30	33	23	12	1.92
31575212--31575295	38	2.2	38	84	0	114	30	25	21	22	1.98
31578687--31578718	16	2.0	16	100	0	64	18	6	25	50	1.70
31580760--31580807	24	1.9	26	83	8	64	37	18	0	43	1.51
31584598--31584862	40	6.6	41	85	6	316	26	22	26	24	2.00
31586839--31586870	16	2.0	16	93	0	55	18	15	31	34	1.93
31593747--31593779	16	2.0	17	88	5	50	27	12	18	42	1.85
31599987--31600313	46	6.9	46	74	11	211	22	29	18	28	1.98
31599988--31600313	96	3.4	96	75	10	267	23	30	19	27	1.98
31599985--31600305	138	2.3	144	80	7	354	23	29	19	27	1.98
31607601--31607891	38	6.9	38	67	19	123	31	14	23	30	1.94
31607628--31607841	48	4.7	48	75	12	209	32	14	21	31	1.94
31607639--31607841	47	4.5	47	77	13	219	31	14	22	31	1.94
31607678--31607878	85	2.4	85	90	0	312	32	13	22	30	1.93
31611131--31611172	15	2.8	15	85	0	57	16	19	14	50	1.79
31613414--31613624	47	4.7	47	76	10	233	30	14	24	30	1.94
31613456--31613662	85	2.4	85	92	0	342	30	14	24	30	1.95
31613593--31613669	38	2.0	38	87	5	111	29	14	24	31	1.94
31618725--31618896	46	3.7	46	76	13	190	30	27	19	22	1.98
31618731--31618900	93	1.8	93	96	0	313	30	28	18	22	1.97
31624391--31624457	20	3.3	20	77	4	64	14	31	19	34	1.92
31628377--31628420	20	2.2	20	91	0	70	38	15	6	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31628616--31628739	23	5.3	23	70	14	67	34	18	23	23	1.96
31629935--31630032	41	2.4	41	100	0	196	37	28	8	25	1.84
31634089--31634133	20	2.1	21	84	8	56	64	2	22	11	1.36
31635982--31636016	17	2.0	18	88	5	54	25	28	31	14	1.95
31636109--31636142	17	1.9	18	88	5	52	11	23	38	26	1.89
31636589--31636728	27	5.2	27	73	2	120	37	22	8	31	1.84
31636597--31636728	54	2.4	54	81	2	149	38	20	9	31	1.84
31636655--31636739	27	3.1	27	77	9	93	42	17	9	30	1.81
31637200--31637295	32	3.0	31	74	6	84	29	20	18	31	1.97
31638619--31638790	27	6.4	27	84	0	209	36	19	19	24	1.95
31639439--31639490	27	2.0	26	84	3	68	17	26	21	34	1.95
31639420--31639595	67	2.6	67	95	0	307	19	28	21	30	1.97
31639508--31639693	98	1.9	98	88	2	284	21	26	19	32	1.97
31639441--31639747	165	1.9	165	91	1	508	19	26	21	32	1.97
31639671--31639721	27	1.9	26	84	4	66	19	23	17	39	1.92
31639606--31639746	67	2.1	67	89	2	212	20	25	21	31	1.98
31646178--31646377	27	7.4	27	86	2	267	35	19	20	24	1.96
31647010--31647185	67	2.6	67	92	0	280	20	28	22	28	1.98
31651006--31651066	31	2.0	31	100	0	122	42	26	9	21	1.84
31666566--31666645	15	5.4	15	73	18	69	61	12	15	11	1.57
31666575--31666654	30	2.7	30	81	11	92	58	13	15	12	1.63
31666577--31666654	15	5.2	15	72	20	56	58	14	14	12	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31671642--31671721	15	5.4	15	73	18	69	61	12	15	11	1.57
31671651--31671730	30	2.7	30	81	11	92	58	13	15	12	1.63
31671653--31671730	15	5.2	15	72	20	56	58	14	14	12	1.63
31676559--31676607	26	2.0	25	88	8	73	61	14	14	10	1.57
31679567--31679739	93	1.9	93	88	2	267	29	28	19	21	1.98
31679560--31679729	46	3.7	46	71	14	152	31	28	18	21	1.97
31684670--31684743	29	2.6	29	86	4	96	25	31	16	27	1.96
31692797--31692870	29	2.6	29	86	4	96	25	31	16	27	1.96
31702154--31702260	41	2.6	41	86	10	155	30	28	21	19	1.98
31702236--31702376	46	3.3	40	80	15	160	23	24	21	30	1.99
31710094--31710298	27	7.6	27	86	3	259	30	27	15	26	1.96
31712113--31712137	13	1.9	13	100	0	50	20	16	40	24	1.91
31713101--31713167	29	2.3	30	92	5	118	40	5	10	43	1.63
31714856--31714957	6	16.8	6	75	17	95	50	13	15	20	1.78
31714856--31714957	30	3.4	30	86	6	143	50	13	15	20	1.78
31715075--31715161	27	3.3	26	88	4	102	35	24	22	17	1.95
31715360--31715555	27	7.3	27	83	1	223	26	19	19	35	1.95
31715560--31716094	27	19.8	27	82	4	542	41	9	21	27	1.84
31715560--31716087	81	6.5	81	88	4	636	41	10	21	27	1.85
31719129--31719197	5	12.4	5	77	17	57	23	1	1	73	0.99
31721115--31721141	13	2.1	13	100	0	54	14	33	37	14	1.88
31722808--31722884	24	3.2	24	62	20	61	27	23	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31722798--31722893	48	2.0	48	100	0	192	27	22	14	35	1.93
31726850--31727023	89	1.9	90	80	3	199	29	20	16	34	1.94
31727006--31727105	43	2.3	43	79	6	103	31	25	13	31	1.93
31727042--31727283	43	5.5	43	71	12	161	26	26	17	28	1.97
31726937--31727902	177	5.5	177	82	5	1132	26	24	17	31	1.97
31726933--31727899	349	2.7	349	84	4	1203	26	24	17	31	1.97
31727537--31727632	43	2.2	45	81	12	119	29	23	15	31	1.96
31730386--31730769	40	9.6	40	88	6	500	24	26	21	27	1.99
31753512--31753561	24	2.1	24	96	0	91	44	8	26	22	1.80
31759073--31759217	40	3.6	40	85	4	193	25	24	26	23	2.00
31760786--31761018	40	5.8	40	86	1	299	25	22	27	24	2.00
31768220--31768250	16	1.9	16	93	0	53	51	29	9	9	1.66
31771678--31771790	28	3.9	28	68	18	79	27	20	25	26	1.99
31774769--31774822	27	2.0	27	85	7	74	38	7	12	40	1.72
31775068--31775300	49	4.7	50	81	2	263	25	18	27	28	1.98
31778021--31778047	13	2.1	13	100	0	54	22	7	29	40	1.81
31784229--31784392	87	1.9	87	89	0	256	14	37	1	47	1.52
31791610--31791648	20	2.0	20	90	10	62	41	0	7	51	1.31
31792337--31792408	35	2.0	36	94	2	128	12	15	13	58	1.64
31794123--31794578	132	3.5	131	89	2	670	25	17	20	35	1.95
31798542--31798618	37	2.1	36	85	4	102	25	29	18	25	1.98
31798737--31799395	47	14.1	47	92	2	988	27	30	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31799234--31799306	22	3.3	22	62	11	58	28	28	10	31	1.91
31803584--31803625	9	4.6	9	85	5	57	69	0	4	26	1.08
31803584--31803624	19	2.2	19	100	0	82	70	0	4	24	1.06
31806087--31806200	34	3.4	34	73	0	102	31	15	10	42	1.81
31808582--31808790	46	4.5	46	70	10	124	29	17	27	25	1.98
31815554--31815646	40	2.4	39	82	10	109	32	16	23	27	1.96
31821456--31821535	34	2.4	34	87	4	108	23	28	21	26	1.99
31833298--31833613	48	6.6	49	86	3	369	26	29	16	26	1.97
31833298--31833613	144	2.2	143	85	4	422	26	29	16	26	1.97
31835069--31835123	29	1.9	29	85	10	78	58	3	14	23	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295