genome.fa.s2.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  195  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66463447--66463543	49	2.0	49	93	0	167	42	17	8	31	1.79
66466085--66466124	19	2.1	19	85	0	53	40	15	12	32	1.84
66470481--66470543	21	3.0	21	88	2	90	30	3	33	33	1.74
66482102--66482279	40	4.5	40	87	4	236	25	28	22	24	2.00
66498100--66498130	10	3.1	10	95	0	53	32	9	25	32	1.88
66500528--66500660	22	6.0	22	84	3	169	30	18	25	26	1.98
66500531--66500680	67	2.2	67	82	9	198	31	18	23	26	1.97
66505117--66505176	27	2.3	27	94	2	95	31	6	18	43	1.76
66517105--66517169	30	2.2	30	91	5	105	44	16	15	23	1.86
66518434--66518493	29	2.1	29	93	0	102	28	41	5	25	1.76
66522197--66522344	74	2.0	74	98	0	287	32	4	20	42	1.71
66526354--66526400	19	2.5	19	96	0	85	27	17	19	36	1.93
66533566--66533672	43	2.5	43	87	1	144	21	30	19	28	1.98
66533796--66533842	20	2.3	20	85	0	67	29	36	12	21	1.91
66535392--66535419	10	2.8	10	100	0	56	92	0	7	0	0.37
66536455--66536559	47	2.2	47	82	14	119	60	1	23	14	1.45
66538229--66538275	20	2.3	20	85	0	67	29	36	12	21	1.91
66541251--66541295	22	2.0	22	100	0	90	51	8	17	22	1.73
66546045--66546154	43	2.6	43	85	2	132	28	28	17	26	1.97
66553148--66553172	8	3.1	8	100	0	50	16	0	24	60	1.36
66557027--66557109	27	3.1	27	86	6	98	37	20	14	27	1.92
66557062--66557178	27	4.4	27	80	4	103	41	18	20	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66557522--66557579	18	3.2	18	71	9	55	27	20	13	37	1.91
66557570--66557667	34	2.9	34	92	0	151	27	20	24	27	1.99
66557559--66557648	34	2.4	39	75	21	109	27	21	22	28	1.99
66566146--66566242	30	3.2	30	70	8	81	28	28	14	27	1.95
66566759--66566805	24	2.0	24	91	0	76	36	2	38	23	1.67
66568214--66568313	28	3.6	28	78	6	105	19	24	22	35	1.96
66568214--66568326	27	4.2	26	81	8	118	18	23	22	36	1.95
66568214--66568326	55	2.1	54	83	5	138	18	23	22	36	1.95
66572975--66573087	27	4.2	26	76	13	102	20	23	21	35	1.96
66572975--66573087	55	2.1	54	81	5	129	20	23	21	35	1.96
66576410--66576466	11	5.5	10	73	22	55	77	1	17	3	1.00
66576399--66576466	21	3.2	20	80	12	66	76	2	17	2	1.04
66576410--66576466	5	11.0	5	77	17	55	77	1	17	3	1.00
66576410--66576466	16	3.7	14	80	17	60	77	1	17	3	1.00
66576535--66576559	12	2.1	12	100	0	50	76	0	16	8	1.02
66576529--66576584	18	3.1	18	76	5	51	69	3	19	7	1.27
66576535--66576616	30	2.7	31	81	5	105	64	1	21	12	1.33
66579148--66579185	15	2.5	15	95	0	67	21	10	34	34	1.87
66582627--66582709	27	3.1	27	84	6	89	38	20	13	27	1.90
66582662--66582716	27	2.0	27	92	0	92	45	23	14	16	1.84
66582664--66582780	27	4.3	26	77	11	85	42	17	18	20	1.89
66583123--66583180	18	3.2	18	71	9	55	27	20	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66583171--66583268	34	2.9	34	92	0	151	27	20	24	27	1.99
66583160--66583249	34	2.4	39	75	21	109	27	21	22	28	1.99
66598649--66598806	68	2.3	68	77	13	153	20	27	15	35	1.94
66603499--66603676	27	6.6	27	82	3	187	29	27	15	27	1.96
66603520--66603675	82	1.9	81	85	3	215	28	27	16	27	1.97
66611600--66611777	27	6.6	27	82	3	187	29	27	15	27	1.96
66611621--66611776	82	1.9	81	85	3	215	28	27	16	27	1.97
66625216--66625244	12	2.3	13	94	5	51	34	3	6	55	1.44
66625425--66625462	14	2.7	14	88	8	51	57	21	0	21	1.40
66629878--66630084	53	3.8	54	80	4	202	21	24	17	36	1.94
66630063--66630174	47	2.4	47	96	0	206	27	25	13	33	1.93
66630900--66630957	30	1.9	31	92	3	100	31	25	6	36	1.83
66633295--66633331	18	2.1	18	100	0	74	32	13	10	43	1.79
66636467--66636513	20	2.3	20	81	0	58	29	34	12	23	1.92
66640907--66640953	20	2.3	20	81	0	58	29	34	12	23	1.92
66649001--66649064	28	2.3	28	88	0	92	18	17	37	26	1.93
66649381--66649504	27	4.6	27	85	0	158	37	17	10	33	1.84
66649505--66649606	27	3.8	27	85	0	132	40	17	7	34	1.79
66649435--66649575	71	2.0	71	84	2	185	42	18	7	31	1.79
66649409--66649598	98	1.9	98	88	0	281	40	17	8	32	1.81
66649381--66649606	125	1.8	125	87	1	337	38	17	9	34	1.82
66649505--66649633	27	4.8	26	81	3	123	38	18	10	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66650597--66650622	6	4.3	6	100	0	52	84	0	0	15	0.62
66654044--66654305	40	6.6	40	86	3	307	24	20	28	26	1.99
66654044--66654305	79	3.3	78	86	3	319	24	20	28	26	1.99
66654083--66654340	79	3.3	80	84	3	229	25	20	28	25	1.99
66661988--66662250	40	6.6	40	87	3	316	24	20	28	26	1.99
66662027--66662285	80	3.3	80	84	3	238	25	20	28	25	1.99
66664520--66664636	28	4.2	28	95	0	198	21	16	37	24	1.93
66664952--66665185	27	8.7	27	74	8	181	39	20	9	29	1.85
66664952--66665185	81	2.9	79	78	5	236	39	20	9	29	1.85
66665137--66665225	27	3.3	27	90	0	133	38	16	15	29	1.90
66666594--66666640	20	2.3	20	85	0	67	29	36	12	21	1.91
66668162--66668232	29	2.6	26	73	16	63	71	4	16	7	1.24
66669253--66669358	48	2.2	47	85	9	135	59	1	24	14	1.45
66671028--66671074	20	2.3	20	85	0	67	29	36	12	21	1.91
66677258--66677303	20	2.3	20	84	0	56	23	19	17	39	1.92
66677249--66677323	30	2.5	30	85	8	82	22	20	18	38	1.93
66680960--66681066	47	2.3	47	85	3	135	47	13	10	28	1.75
66685663--66685694	14	2.1	16	88	11	50	56	0	0	43	0.99
66688658--66688733	38	2.0	38	100	0	152	31	13	23	31	1.93
66689922--66690066	40	3.6	40	85	4	193	25	24	26	23	2.00
66696707--66696782	38	2.0	38	100	0	152	31	13	23	31	1.93
66697969--66698112	40	3.6	40	85	5	184	25	24	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66714720--66714951	115	2.0	115	96	0	428	23	18	15	42	1.89
66715438--66715494	26	2.2	26	90	0	87	35	8	31	24	1.86
66719286--66719381	42	2.3	41	84	10	115	33	29	18	18	1.95
66719935--66719993	30	2.0	30	83	6	75	30	23	1	44	1.64
66726989--66727040	23	2.3	22	75	21	54	9	23	1	65	1.32
66732575--66732658	28	3.0	28	87	6	134	30	26	13	29	1.93
66732643--66732739	40	2.4	39	86	3	122	31	28	17	21	1.96
66740860--66740896	19	1.9	19	88	0	56	43	5	21	29	1.75
66743563--66743660	34	3.0	33	79	8	101	26	24	22	26	2.00
66750315--66750546	49	4.7	49	82	3	284	29	28	18	24	1.98
66750315--66750546	100	2.3	99	84	2	295	29	28	18	24	1.98
66755377--66755620	49	4.9	49	83	2	308	29	26	18	26	1.98
66755390--66755620	100	2.3	99	85	2	302	29	26	18	25	1.98
66762478--66762553	34	2.2	34	90	0	116	30	7	17	44	1.77
66763916--66764031	57	2.0	57	100	0	232	38	17	10	33	1.83
66764052--66764167	28	4.1	28	84	0	133	31	28	11	28	1.91
66764152--66764255	40	2.6	40	80	3	111	36	27	14	21	1.92
66780120--66780276	56	2.8	53	83	9	172	28	33	19	19	1.96
66788670--66788741	28	2.6	28	84	0	99	29	27	11	31	1.91
66801082--66801124	18	2.5	17	81	11	52	34	0	2	62	1.08
66801210--66801250	18	2.3	19	80	16	52	60	0	0	39	0.96
66802626--66802683	22	2.6	22	86	5	73	51	3	5	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66808430--66808477	16	2.8	17	81	15	55	52	6	12	29	1.63
66809233--66809289	26	2.1	29	87	9	84	17	10	14	57	1.64
66809241--66809289	12	3.5	15	71	23	52	20	8	16	55	1.66
66809430--66809464	17	1.9	17	88	11	52	2	14	0	82	0.77
66814579--66814612	15	2.3	15	89	0	50	50	17	11	20	1.77
66818564--66818634	35	2.0	35	97	0	133	21	32	21	25	1.98
66840966--66841044	29	2.7	30	82	13	110	29	30	15	25	1.96
66848991--66849069	29	2.7	30	82	13	110	29	30	15	25	1.96
66856398--66856613	46	4.6	46	78	11	197	20	28	20	30	1.98
66860966--66861003	14	2.7	14	91	0	58	36	18	7	36	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295