genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  106  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34391133--34391678	152	3.7	152	94	2	923	32	24	6	36	1.81
34395723--34395881	46	3.4	46	73	17	148	20	19	30	29	1.97
34395709--34395879	93	1.8	93	87	0	252	21	19	29	29	1.98
34396108--34396145	19	2.0	20	85	15	53	36	0	23	39	1.55
34397200--34397342	42	3.3	43	78	6	148	33	23	15	27	1.95
34400331--34400520	56	3.4	56	92	0	299	33	25	14	26	1.94
34400466--34400648	43	4.3	43	83	0	231	31	25	15	27	1.96
34403995--34404063	34	2.0	34	94	0	120	24	18	24	31	1.98
34413117--34413326	28	7.5	28	93	1	341	27	11	26	33	1.92
34421127--34421307	55	3.2	56	91	3	285	27	11	27	34	1.91
34421127--34421307	28	6.5	28	92	3	285	27	11	27	34	1.91
34421127--34421307	83	2.2	84	90	3	285	27	11	27	34	1.91
34426071--34426120	26	1.9	26	100	0	100	24	20	16	40	1.91
34433944--34434026	32	2.6	31	78	3	94	28	21	18	31	1.97
34434226--34434288	32	2.0	32	84	6	83	11	17	28	42	1.83
34444895--34445032	40	3.5	40	85	5	163	28	26	19	24	1.99
34444885--34445051	40	4.2	40	85	1	140	27	25	20	25	1.99
34458018--34458241	40	5.6	40	80	8	219	24	20	28	26	1.99
34458019--34458241	80	2.8	80	81	8	258	24	20	28	26	1.99
34472281--34472305	13	1.9	13	100	0	50	28	32	24	16	1.96
34477782--34478065	39	7.1	39	84	6	370	24	29	22	23	1.99
34477808--34477897	47	1.9	47	93	0	153	24	33	22	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34487858--34487899	8	5.0	8	94	5	66	14	0	0	85	0.59
34488145--34488178	16	2.1	16	100	0	68	47	0	0	52	1.00
34488160--34488214	27	2.1	26	86	6	76	52	0	3	43	1.18
34489682--34489756	27	2.7	27	93	2	123	32	8	17	42	1.78
34490292--34490343	26	2.0	26	92	7	88	28	9	23	38	1.86
34506755--34506780	13	2.0	13	100	0	52	23	7	46	23	1.78
34515937--34515989	28	1.9	27	84	3	70	33	24	16	24	1.96
34516140--34516185	22	2.1	22	87	0	65	36	28	19	15	1.92
34518673--34518737	28	2.4	28	86	2	87	30	23	24	21	1.99
34518879--34518929	22	2.3	22	93	0	84	41	29	19	9	1.84
34518969--34519029	27	2.5	25	79	12	65	42	21	19	16	1.89
34520810--34520842	8	4.0	8	96	4	57	63	24	0	12	1.28
34543775--34543942	46	3.6	45	75	15	155	21	20	28	29	1.98
34543772--34543943	93	1.8	93	90	4	276	21	20	29	29	1.98
34549263--34549435	45	3.8	45	78	14	203	20	20	29	29	1.98
34549260--34549428	91	1.8	92	93	3	297	20	21	29	28	1.98
34551098--34551179	34	2.4	34	82	8	96	40	13	12	34	1.82
34555085--34555117	14	2.3	15	89	5	50	30	0	0	69	0.88
34556124--34556176	26	2.0	26	88	0	79	24	7	5	62	1.44
34569053--34569222	92	1.8	93	89	1	270	21	21	28	28	1.98
34569065--34569227	46	3.5	46	74	14	156	22	20	28	29	1.98
34602372--34602524	42	3.6	42	83	3	182	29	24	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34609964--34610114	42	3.6	42	85	3	187	27	26	15	30	1.96
34611552--34611596	20	2.2	20	88	0	63	35	13	2	48	1.54
34619174--34619212	20	2.0	20	94	0	69	35	10	2	51	1.50
34623282--34623318	18	2.1	18	100	0	74	21	16	5	56	1.59
34632536--34632566	7	4.3	7	92	8	53	70	0	0	29	0.87
34632536--34632566	15	2.1	14	94	5	53	70	0	0	29	0.87
34633171--34633759	125	4.7	124	87	2	829	36	17	16	29	1.91
34633171--34633759	249	2.4	249	89	2	876	36	17	16	29	1.91
34634484--34634562	31	2.5	31	95	0	140	27	25	17	29	1.98
34634586--34634677	42	2.2	42	88	0	130	33	22	15	28	1.94
34634821--34634943	26	4.8	26	89	1	169	29	22	21	26	1.99
34635746--34635829	27	3.1	27	87	3	116	22	26	20	30	1.98
34635974--34636293	27	11.9	27	75	10	271	29	9	21	39	1.85
34635981--34636293	80	3.9	80	91	1	439	28	9	22	40	1.84
34636008--34636292	107	2.7	107	77	3	261	28	9	22	39	1.86
34635868--34636293	27	15.8	27	74	4	268	29	10	20	39	1.86
34636285--34636415	27	4.9	27	84	0	163	41	9	20	29	1.83
34636295--34636415	54	2.2	54	89	0	188	42	9	20	27	1.84
34640802--34640840	18	2.1	19	85	4	53	51	7	7	33	1.59
34643033--34643067	16	2.2	16	89	0	52	51	20	17	11	1.75
34643194--34643227	18	1.9	18	94	5	61	23	23	38	14	1.92
34643300--34643379	29	2.8	29	78	0	88	27	17	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34645960--34645990	16	1.9	16	100	0	62	32	6	16	45	1.72
34648855--34648908	14	3.9	14	80	0	63	24	0	29	46	1.53
34648939--34648967	14	2.0	15	93	6	51	20	0	37	41	1.53
34648944--34649057	7	16.1	7	71	12	72	17	0	41	41	1.49
34649842--34649895	16	3.8	16	70	27	57	38	9	3	48	1.53
34652158--34652742	293	2.0	293	100	0	1170	29	14	21	34	1.93
34655144--34655177	17	2.0	17	100	0	68	5	11	23	58	1.55
34655103--34655220	59	2.0	60	83	1	148	20	16	26	36	1.94
34659982--34660186	27	7.6	27	86	3	259	26	15	27	30	1.96
34659983--34660186	109	1.9	108	89	3	320	26	15	27	30	1.96
34668010--34668214	27	7.6	27	85	4	252	26	15	28	29	1.96
34671024--34671067	19	2.4	19	85	7	56	50	0	9	40	1.34
34671081--34671105	12	2.1	12	100	0	50	40	0	8	52	1.31
34673773--34673867	34	2.9	32	77	16	95	27	23	23	26	2.00
34688944--34688987	22	2.0	22	86	4	61	22	0	13	63	1.29
34689269--34689396	32	4.0	32	97	0	229	30	10	21	37	1.88
34692921--34693093	46	3.7	46	76	13	192	30	31	18	19	1.96
34692928--34693100	93	1.9	93	93	0	301	30	31	19	19	1.96
34702189--34702284	50	1.9	50	95	0	174	26	4	21	47	1.68
34702893--34702962	21	3.5	21	71	15	76	52	14	10	22	1.71
34702895--34702971	38	2.0	38	97	0	145	50	15	11	22	1.76
34708940--34708979	19	2.1	19	86	9	55	27	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34710648--34710860	105	2.0	105	95	0	381	39	22	15	22	1.91
34714476--34714516	15	2.7	15	96	0	73	31	26	4	36	1.78
34720959--34721005	15	3.4	14	77	14	53	31	27	2	38	1.69
34727576--34727620	22	2.0	22	91	0	72	33	2	15	48	1.57
34732968--34733064	33	2.9	33	84	6	142	28	45	9	16	1.78
34739009--34739098	46	2.0	46	93	0	153	23	5	11	60	1.52
34750456--34750497	21	2.0	21	100	0	84	38	9	19	33	1.84
34752422--34752488	31	2.2	31	86	10	93	25	20	8	44	1.80
34757229--34757305	36	2.1	36	100	0	154	42	18	7	31	1.78
34780203--34780469	46	5.7	46	74	10	231	22	28	21	26	1.99
34780202--34780466	93	2.9	93	84	6	342	23	28	20	27	1.99
34780808--34780865	30	1.9	30	92	0	98	27	25	13	32	1.94
34782669--34782764	27	3.6	27	81	0	111	28	23	23	23	2.00
34783881--34783942	24	2.7	24	82	5	65	51	9	8	30	1.63
34785823--34785973	42	3.6	42	83	1	185	33	14	23	29	1.94
34792245--34792371	46	2.8	45	79	13	127	29	18	29	23	1.97
34792357--34792466	49	2.3	49	85	1	141	28	19	27	25	1.98
34792438--34792491	28	1.9	28	92	0	90	24	16	31	27	1.96
34796641--34796791	42	3.6	42	80	2	169	31	13	24	30	1.93
34796966--34796995	15	1.9	16	93	6	53	36	0	23	40	1.55
34802534--34802576	16	2.7	16	88	0	68	37	0	30	32	1.58
34802567--34802659	44	2.1	43	86	11	125	32	4	25	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34805335--34805694	46	7.6	48	74	15	254	27	20	29	22	1.98
34805329--34805694	142	2.6	140	82	8	431	27	20	29	22	1.99
34822298--34822341	17	2.5	19	75	17	51	25	15	15	43	1.87
34823168--34823220	25	2.1	25	100	0	106	49	18	3	28	1.65
34831696--34831854	43	3.7	43	72	10	146	31	23	18	26	1.97
34843255--34843313	27	2.2	27	84	0	73	33	13	22	30	1.92
34843255--34843321	27	2.5	26	80	9	71	29	14	23	31	1.95
34843276--34843346	27	2.6	28	80	10	67	28	15	26	29	1.96
34847959--34848142	78	2.3	80	81	9	207	25	27	22	23	2.00
34847940--34848142	40	5.1	40	81	8	220	25	27	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295