genome.fa.s2.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  117  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40272313--40272484	93	1.8	93	93	2	301	21	21	29	27	1.99
40275360--40275476	29	4.1	29	86	3	166	31	31	13	23	1.93
40275687--40275721	16	2.2	16	94	0	61	11	20	17	51	1.75
40283337--40283418	43	1.9	43	82	5	103	32	12	21	32	1.91
40287709--40287804	42	2.3	43	82	8	117	30	18	23	27	1.98
40295237--40295420	40	4.6	40	82	4	219	25	23	26	25	2.00
40295237--40295420	80	2.3	80	88	1	262	25	23	26	25	2.00
40303393--40303576	40	4.6	40	82	2	226	25	22	26	26	2.00
40312138--40312254	29	4.1	29	92	1	191	29	30	14	25	1.95
40318767--40318942	46	3.8	46	78	14	200	20	19	29	30	1.97
40318764--40318935	93	1.8	93	93	2	301	20	20	29	29	1.98
40322537--40322651	43	2.7	43	82	6	162	30	13	24	32	1.93
40324237--40324365	46	2.8	46	86	3	170	20	20	25	33	1.97
40327413--40327474	29	2.1	29	85	5	81	45	8	0	46	1.32
40334239--40334309	35	2.0	35	88	0	106	23	23	8	43	1.81
40334697--40334790	49	1.9	49	93	4	163	29	25	2	42	1.67
40350209--40350522	27	11.7	27	79	7	282	38	20	9	31	1.84
40350474--40350562	27	3.3	26	84	6	106	37	16	16	29	1.92
40351024--40351048	11	2.3	11	100	0	50	28	8	20	44	1.79
40353402--40353472	28	2.5	28	79	6	72	32	15	29	22	1.95
40353771--40354054	27	10.7	27	80	6	312	36	21	10	30	1.88
40353771--40354053	81	3.6	80	85	2	349	37	21	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40354033--40354095	27	2.3	27	83	0	72	38	15	17	28	1.91
40354622--40354709	27	3.3	27	88	4	117	23	17	27	31	1.97
40357325--40357638	27	11.7	27	84	2	319	37	20	10	31	1.86
40357325--40357638	81	3.9	81	85	2	364	37	20	10	31	1.86
40359259--40359517	42	6.2	42	76	10	219	24	18	17	39	1.92
40359259--40359517	84	3.1	82	78	6	272	24	18	17	39	1.92
40359263--40359490	126	1.8	126	84	7	320	24	17	17	39	1.92
40359298--40359527	126	1.8	126	81	7	288	24	17	18	39	1.92
40366926--40367119	47	4.1	47	87	0	271	34	10	28	26	1.89
40366955--40367028	22	3.2	22	66	23	62	35	13	28	22	1.92
40367089--40367323	48	4.8	48	89	6	373	34	6	26	31	1.83
40367090--40367363	148	1.9	143	82	8	349	33	8	27	29	1.86
40367469--40367577	37	2.9	37	95	0	191	22	19	31	26	1.98
40369697--40369748	26	2.0	25	85	14	70	38	3	26	30	1.74
40373211--40373330	37	3.2	37	83	6	145	30	19	24	25	1.98
40373310--40373442	48	2.8	48	91	0	203	24	20	26	28	1.99
40373368--40373462	48	2.1	43	81	14	104	25	16	26	31	1.97
40375371--40375461	27	3.4	27	78	4	85	36	16	18	28	1.93
40396970--40397351	48	7.9	48	80	1	433	28	17	28	25	1.98
40396975--40397350	96	3.9	96	91	1	592	27	18	28	25	1.98
40403057--40403119	30	2.1	30	93	0	108	23	4	15	55	1.59
40412214--40412254	18	2.2	19	91	4	66	48	17	9	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40412214--40412269	19	2.9	19	86	5	69	46	14	10	28	1.78
40415934--40416092	43	3.7	42	73	7	124	33	26	17	22	1.96
40415986--40416093	44	2.5	42	76	7	110	35	27	15	21	1.94
40434942--40435049	26	4.2	26	93	0	189	29	7	25	37	1.83
40438744--40438792	24	2.1	24	85	11	66	38	6	0	55	1.25
40438902--40438965	26	2.5	25	75	9	58	46	3	4	45	1.39
40441707--40441740	2	17.0	2	100	0	68	50	0	50	0	1.00
40451769--40451806	19	2.1	18	85	14	51	44	5	34	15	1.69
40452697--40452755	21	2.6	24	76	15	70	38	25	23	11	1.89
40452876--40453001	24	5.2	24	79	3	137	23	25	34	15	1.95
40452876--40453001	48	2.6	47	86	3	162	23	25	34	15	1.95
40452874--40453031	48	3.3	47	78	7	156	25	24	35	14	1.94
40457062--40457094	3	10.7	3	93	6	57	66	0	3	30	1.06
40457162--40457196	18	1.9	18	88	11	54	77	2	0	20	0.90
40458779--40459033	44	5.8	43	84	7	261	28	21	20	30	1.98
40458779--40459033	88	2.9	88	87	3	361	28	21	20	30	1.98
40458727--40459033	132	2.3	134	84	7	381	28	20	19	30	1.97
40467140--40467184	19	2.4	19	85	7	56	42	8	22	26	1.83
40470978--40471011	3	11.7	3	87	6	52	64	2	0	32	1.08
40471079--40471113	18	1.9	18	88	0	52	74	2	2	20	1.08
40478815--40479013	102	2.0	102	89	4	312	36	10	17	36	1.83
40479051--40479080	12	2.5	12	88	0	51	56	0	26	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40482957--40483042	45	1.9	45	92	4	147	26	12	23	37	1.91
40497807--40497855	25	2.0	25	100	0	98	36	16	8	38	1.78
40500363--40500497	44	3.1	44	75	10	107	28	19	18	34	1.95
40500602--40500819	89	2.4	89	86	1	303	28	21	16	33	1.95
40500591--40500819	44	5.2	44	83	4	262	27	20	17	33	1.95
40504798--40504839	14	3.2	14	77	16	54	14	0	9	76	1.02
40505276--40505327	25	2.0	26	81	3	61	48	3	23	25	1.68
40505381--40505406	13	2.0	13	100	0	52	38	0	23	38	1.55
40505507--40505531	13	1.9	13	100	0	50	44	8	16	32	1.76
40510675--40510732	24	2.4	24	82	5	64	29	22	24	24	1.99
40512779--40512836	26	2.2	26	93	0	98	34	5	24	36	1.78
40514456--40514595	27	5.2	27	88	2	183	17	24	22	35	1.96
40514456--40514595	54	2.6	55	89	2	203	17	24	22	35	1.96
40514657--40514696	19	2.0	22	85	14	59	17	2	47	32	1.61
40516134--40516176	21	2.0	22	81	4	52	32	9	23	34	1.87
40516755--40516794	21	1.9	21	89	0	62	52	17	12	17	1.74
40521061--40521116	18	3.0	21	70	21	52	46	0	0	53	1.00
40522673--40522722	21	2.4	21	80	6	57	52	20	2	26	1.57
40530412--40530606	94	2.1	94	82	3	232	29	17	28	24	1.98
40530412--40530765	46	7.5	49	71	11	197	27	19	29	24	1.98
40540813--40540849	17	2.2	18	85	9	51	27	16	13	43	1.85
40554279--40554340	30	2.1	30	84	0	79	19	24	32	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40565816--40565944	46	2.8	46	91	0	204	20	21	27	30	1.98
40571987--40572059	36	2.0	37	97	2	139	35	13	26	24	1.93
40573329--40573504	46	3.8	46	77	12	180	21	20	28	29	1.98
40573326--40573497	93	1.8	93	91	0	281	21	20	29	28	1.98
40583896--40583963	33	2.1	33	100	0	136	25	14	20	39	1.91
40590228--40590260	14	2.5	13	90	9	50	39	0	27	33	1.57
40594869--40595059	54	3.6	53	75	10	156	38	19	15	26	1.92
40594860--40595037	81	2.2	81	84	5	218	38	19	15	25	1.92
40594880--40595059	27	6.7	27	78	5	141	37	19	15	28	1.92
40594992--40595055	26	2.4	26	79	7	67	40	15	12	31	1.85
40609655--40609722	21	3.2	21	89	4	102	8	1	42	47	1.43
40609662--40609725	7	9.1	7	80	0	65	7	0	46	45	1.32
40610265--40610315	7	7.3	7	84	0	66	23	11	33	31	1.91
40610283--40610356	21	3.5	20	80	7	76	25	9	32	32	1.88
40611177--40611216	21	2.0	21	85	14	57	20	25	40	15	1.90
40612397--40612572	49	3.6	49	81	5	187	24	28	19	27	1.98
40621712--40621738	6	4.5	6	100	0	54	0	0	62	37	0.95
40621979--40622014	18	2.0	18	88	0	54	41	2	25	30	1.69
40623554--40623609	9	6.2	9	81	6	69	71	1	0	26	0.96
40623554--40623609	26	2.1	27	86	6	78	71	1	0	26	0.96
40628537--40628576	19	2.1	19	85	4	53	67	5	7	20	1.34
40628599--40628666	19	3.6	19	78	11	61	54	4	2	38	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40628640--40628702	29	2.3	27	83	10	74	63	4	1	30	1.24
40629272--40629345	38	1.9	38	91	5	123	29	4	4	62	1.32
40629314--40629366	21	2.5	22	76	17	58	35	1	7	54	1.40
40629280--40629503	20	11.8	18	66	20	93	32	2	3	61	1.27
40629370--40629535	38	4.6	36	72	22	86	29	2	3	65	1.20
40629444--40629505	29	2.1	29	82	11	74	22	3	1	72	1.08
40629481--40629526	22	2.1	21	92	4	74	19	4	2	73	1.10
40629272--40629503	9	24.6	9	69	19	100	31	2	3	62	1.27
40629522--40629581	30	2.0	30	93	0	102	41	1	11	45	1.50
40630387--40630443	28	2.0	29	89	3	89	22	5	5	66	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295