genome.fa.s2.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  186  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63986942--63986985	23	1.9	23	95	0	79	29	4	11	54	1.56
63987867--63987913	20	2.3	20	78	7	60	29	0	6	63	1.19
63992601--63992651	23	2.4	21	87	9	68	47	27	1	23	1.63
63993020--63993051	16	2.0	16	100	0	64	62	0	6	31	1.20
63995505--63995628	42	3.0	41	79	3	142	27	16	25	29	1.97
63996736--63996956	108	2.0	108	88	0	325	17	28	29	23	1.97
64000773--64000900	60	2.1	60	97	0	238	27	7	9	55	1.59
64000994--64001168	38	4.6	38	89	0	233	18	18	28	33	1.95
64001028--64001093	16	3.8	16	69	21	51	19	21	28	30	1.98
64000980--64001174	76	2.6	76	84	0	237	19	17	28	34	1.94
64001005--64001115	22	5.6	21	67	23	80	17	18	29	34	1.94
64003350--64003388	15	2.5	15	84	15	53	28	0	2	69	1.02
64004737--64004769	17	1.9	18	88	11	52	15	6	3	75	1.11
64005605--64005652	18	2.7	18	71	12	53	52	16	10	20	1.73
64014043--64014096	22	2.5	22	96	0	99	22	9	22	46	1.80
64018487--64019001	270	1.9	270	93	0	888	26	13	21	38	1.90
64020412--64021470	532	2.0	524	95	1	1920	28	20	15	35	1.93
64029834--64030112	41	6.8	41	89	6	413	28	21	22	27	1.99
64029855--64030112	82	3.1	82	96	3	459	28	21	23	26	1.99
64029842--64030166	123	2.6	121	84	7	395	28	20	23	26	1.99
64030325--64030422	33	2.9	33	84	7	108	30	9	22	37	1.85
64031328--64031376	18	2.8	16	84	12	53	53	14	2	30	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64038849--64039034	49	3.8	48	83	4	246	29	28	17	24	1.98
64038861--64039045	99	1.9	99	94	2	327	28	29	17	24	1.97
64045023--64045138	28	4.2	28	77	2	119	19	24	18	37	1.94
64066185--64066242	26	2.2	26	84	6	73	37	24	10	27	1.88
64066350--64066458	28	3.9	28	90	1	166	18	25	20	35	1.95
64069132--64069163	13	2.3	15	89	10	50	25	34	3	37	1.72
64072311--64072434	6	19.8	6	70	19	67	45	13	19	20	1.84
64072325--64072394	27	2.7	25	89	8	113	45	11	21	21	1.83
64072320--64072444	31	4.2	31	86	8	150	46	12	20	20	1.83
64073219--64073370	27	5.6	27	80	6	121	26	18	20	34	1.95
64073217--64073399	54	3.4	54	83	6	219	27	16	20	34	1.95
64073354--64073601	27	9.2	27	83	0	289	31	7	21	39	1.82
64073227--64073561	81	4.1	81	83	4	266	28	12	20	37	1.90
64073269--64073601	54	6.2	53	84	3	292	30	10	21	38	1.87
64073352--64073601	81	3.1	80	87	2	347	31	7	21	39	1.81
64078055--64078230	46	3.8	46	78	12	198	20	21	29	28	1.98
64078052--64078223	93	1.8	93	94	0	308	20	21	29	27	1.98
64079980--64080042	26	2.6	23	67	13	63	14	36	30	19	1.91
64080754--64080842	44	2.0	44	91	0	142	25	13	25	34	1.93
64085645--64085816	45	3.8	45	92	3	274	25	15	30	28	1.96
64085645--64085870	90	2.5	90	87	2	299	25	16	30	26	1.97
64085646--64085869	45	4.9	45	87	3	270	25	16	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64088900--64089074	48	3.6	48	93	0	296	36	7	25	30	1.84
64090372--64090547	46	3.8	46	79	12	216	20	21	29	28	1.98
64090369--64090540	93	1.8	93	96	0	317	20	21	29	27	1.98
64097940--64098115	46	3.8	46	79	12	216	20	21	29	28	1.98
64097937--64098108	93	1.8	93	96	0	317	20	21	29	27	1.98
64099419--64099531	48	2.4	48	93	0	190	37	5	24	32	1.78
64099676--64099781	37	2.9	37	92	0	176	25	17	31	25	1.97
64103592--64103649	29	2.0	29	82	3	71	43	8	8	39	1.66
64117184--64117227	20	2.2	20	83	4	52	54	18	25	2	1.55
64137108--64137281	46	3.8	45	79	11	201	20	20	29	28	1.98
64141031--64141206	46	3.8	45	81	10	212	21	21	29	28	1.98
64141028--64141198	93	1.8	93	94	0	306	21	21	29	27	1.98
64144931--64145097	46	3.6	45	79	10	203	20	19	30	28	1.97
64147727--64147906	48	3.9	48	71	14	160	27	23	21	27	1.99
64151956--64152007	27	1.9	27	92	0	86	44	7	11	36	1.70
64158793--64158846	27	2.0	27	85	3	74	35	20	22	22	1.96
64158847--64158992	27	5.4	27	82	3	168	25	19	19	34	1.96
64162019--64162199	40	4.6	40	83	2	213	25	24	25	24	2.00
64170034--64170214	40	4.6	40	86	2	231	24	24	25	25	2.00
64176338--64176439	40	2.6	41	85	6	138	21	29	26	22	1.99
64182535--64182628	46	2.1	45	86	4	136	30	27	19	22	1.98
64183789--64184106	160	2.0	160	95	0	573	36	19	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64186881--64186959	40	2.0	40	85	5	106	22	27	26	22	1.99
64190156--64190216	27	2.3	26	82	2	68	37	19	19	22	1.94
64190934--64191077	27	5.4	27	87	1	200	25	22	18	34	1.96
64190937--64191077	53	2.6	53	87	1	201	24	22	18	34	1.96
64199957--64200115	44	3.7	43	72	18	134	23	20	26	29	1.99
64200006--64200106	43	2.4	42	81	5	105	26	19	24	28	1.99
64200882--64200924	22	2.0	22	86	9	61	23	2	25	48	1.62
64206006--64206147	40	3.6	40	83	6	173	26	23	27	23	2.00
64213882--64214098	40	5.5	40	90	3	316	23	22	28	25	2.00
64213883--64214098	119	1.8	118	88	7	330	24	22	28	25	1.99
64215456--64215539	43	2.0	42	88	2	123	23	16	25	34	1.95
64215459--64215558	43	2.4	42	83	5	121	24	18	27	31	1.97
64218849--64219173	48	6.8	48	91	0	497	35	6	27	31	1.82
64218849--64219173	144	2.3	144	95	0	569	35	6	27	31	1.82
64219218--64219318	37	2.7	37	96	0	184	23	19	31	24	1.98
64221262--64221561	40	7.5	40	90	0	456	24	22	29	25	1.99
64221739--64221789	25	2.0	25	81	7	59	33	13	31	21	1.92
64224635--64225007	48	7.8	48	93	0	602	34	6	27	31	1.82
64225051--64225153	37	2.8	37	89	0	152	26	17	30	26	1.97
64233280--64233385	40	2.7	40	86	5	144	21	28	25	24	1.99
64233254--64233392	40	3.5	41	76	14	139	23	28	22	25	1.99
64238085--64238223	40	3.5	40	90	3	201	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64239672--64239724	15	3.8	15	80	16	69	69	11	0	18	1.17
64240661--64240774	39	2.9	39	89	0	183	28	30	19	21	1.97
64242848--64243904	546	1.9	545	82	5	1319	34	18	10	36	1.85
64244641--64244756	42	2.7	44	81	9	141	23	17	25	33	1.96
64244617--64244775	43	3.7	43	77	9	155	24	18	26	30	1.98
64245938--64245999	31	2.0	32	83	3	81	37	20	20	20	1.95
64249417--64249614	50	4.0	49	81	5	245	40	18	10	30	1.84
64249411--64249614	100	2.0	100	87	1	293	41	18	10	30	1.83
64249773--64249850	41	1.9	41	82	10	97	30	29	19	20	1.97
64255668--64255745	38	2.1	38	100	0	156	17	28	33	20	1.96
64258980--64259006	12	2.2	12	100	0	54	62	0	22	14	1.31
64263889--64263956	36	1.9	35	81	3	82	42	4	19	33	1.71
64266379--64266500	28	4.3	29	80	2	131	46	24	13	15	1.81
64266604--64266715	55	2.1	53	85	9	147	21	25	13	40	1.89
64268839--64268874	16	2.2	16	90	0	54	8	16	13	61	1.56
64269661--64269731	35	2.0	35	97	0	133	35	21	11	32	1.89
64280998--64281166	42	4.1	42	87	3	243	33	21	19	26	1.97
64280998--64281166	82	2.1	82	89	2	259	33	21	19	26	1.97
64289221--64289537	64	4.9	64	81	6	318	31	15	29	24	1.95
64293381--64293436	27	2.1	27	89	0	85	32	16	17	33	1.92
64299874--64299931	27	2.1	27	87	0	80	37	18	13	29	1.90
64300046--64300087	18	2.3	19	88	12	70	21	45	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64300055--64300094	17	2.2	17	86	8	53	25	45	20	10	1.81
64300603--64300692	44	2.0	44	100	0	180	44	24	8	22	1.81
64302308--64302335	8	3.5	8	100	0	56	64	0	0	35	0.94
64302401--64302433	12	2.6	13	90	4	50	75	0	24	0	0.80
64304218--64304311	26	3.6	26	79	12	111	42	21	8	27	1.81
64304230--64304339	26	4.2	26	79	6	105	41	23	8	26	1.82
64304218--64304341	53	2.4	51	80	9	124	42	22	8	26	1.81
64304335--64304610	27	10.2	27	85	3	331	31	21	5	40	1.77
64304335--64304610	81	3.4	81	89	0	399	31	21	5	40	1.77
64304853--64304904	27	2.0	26	84	3	68	17	26	21	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295