genome.fa.s2.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  122  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41892825--41892874	19	2.7	19	80	17	61	32	10	0	58	1.31
41892958--41893048	20	4.8	20	74	18	63	35	1	1	62	1.10
41892957--41893048	30	3.3	27	80	13	89	34	1	1	63	1.09
41892948--41893048	9	10.8	9	75	16	82	34	1	0	62	1.13
41892957--41893074	10	12.2	10	67	20	56	33	1	1	62	1.15
41893041--41893083	22	2.0	21	82	13	52	37	2	4	55	1.33
41899386--41899424	10	3.9	10	86	0	60	61	2	0	35	1.10
41899661--41899738	10	7.8	10	73	9	70	37	0	3	58	1.16
41899663--41899735	31	2.4	29	79	18	78	38	0	4	57	1.18
41899652--41899744	41	2.3	40	88	5	134	40	0	3	55	1.16
41899652--41899765	61	1.9	60	82	15	146	41	0	2	55	1.20
41899660--41899866	50	4.2	49	73	15	128	39	1	2	56	1.23
41899818--41899878	22	2.7	22	85	7	79	29	1	1	67	1.10
41899817--41899879	10	5.8	10	75	12	54	30	1	1	66	1.10
41899652--41899878	20	11.4	20	72	16	143	38	1	2	57	1.21
41899852--41899881	12	2.5	12	94	0	51	23	0	0	76	0.78
41899817--41899880	11	5.8	11	73	14	51	29	1	1	67	1.09
41900884--41900908	13	1.9	13	100	0	50	92	8	0	0	0.40
41906963--41907070	42	2.6	42	81	0	117	30	32	13	23	1.93
41907047--41907195	48	3.1	49	81	3	133	27	28	18	25	1.98
41907092--41907263	48	3.6	48	82	0	191	24	27	20	26	1.99
41907634--41907718	44	1.9	44	95	0	152	35	21	9	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915382--41915504	46	2.6	46	84	7	160	26	30	17	26	1.97
41917365--41917478	42	2.7	42	87	2	149	30	30	14	24	1.94
41917454--41917672	48	4.5	49	84	6	189	24	29	18	27	1.98
41917496--41917682	97	1.9	97	84	1	250	22	28	20	28	1.98
41917496--41917674	48	3.7	47	87	3	214	22	29	20	27	1.99
41919927--41919998	20	3.6	20	94	0	117	13	33	29	23	1.93
41931958--41932129	46	3.7	45	77	10	177	22	19	29	29	1.98
41931951--41932121	93	1.8	93	89	0	270	22	20	28	28	1.98
41940626--41940758	48	2.8	48	82	0	149	27	18	24	29	1.98
41944042--41944066	13	1.9	13	100	0	50	32	0	4	64	1.12
41944044--41944085	16	2.8	16	79	13	54	35	0	4	59	1.19
41944338--41944371	12	2.8	12	83	16	52	41	0	5	52	1.25
41944979--41945003	6	4.2	6	100	0	50	16	16	16	52	1.76
41944933--41945062	57	2.2	58	84	2	172	20	21	17	40	1.92
41945196--41945300	18	5.8	18	76	8	88	39	15	13	32	1.86
41945184--41945300	36	3.3	36	72	10	105	40	14	12	32	1.84
41946380--41946444	32	2.0	32	100	0	130	40	0	15	44	1.46
41947583--41947670	44	2.0	44	88	0	131	48	3	10	37	1.54
41947964--41948051	44	2.0	44	88	0	131	50	4	9	36	1.55
41948420--41948462	22	2.0	22	86	8	63	41	0	4	53	1.21
41950350--41950391	22	1.9	22	90	0	66	50	0	7	42	1.30
41951152--41951328	39	4.5	39	89	2	257	18	20	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41951122--41951328	78	2.6	77	84	6	256	19	20	29	29	1.97
41957751--41957928	39	4.5	39	91	1	266	19	23	27	30	1.98
41959617--41959661	22	1.9	25	86	13	69	44	8	4	42	1.56
41970893--41970929	15	2.5	15	95	0	65	32	16	27	24	1.96
41972393--41972451	29	2.0	29	96	0	109	20	6	32	40	1.78
41973236--41973285	18	2.8	18	75	6	57	64	2	4	30	1.23
41973275--41973382	20	5.6	20	76	10	91	57	1	2	37	1.24
41973176--41973383	67	3.1	67	76	15	171	59	1	3	35	1.25
41973284--41973332	18	2.7	18	81	12	57	55	0	4	40	1.19
41973269--41973363	49	1.9	49	81	8	113	56	2	3	37	1.27
41973273--41973382	10	11.3	9	74	13	69	58	1	2	37	1.23
41973595--41973737	20	7.3	19	69	18	80	41	4	1	53	1.29
41973595--41973756	10	16.5	10	67	22	69	40	4	1	53	1.28
41973595--41973738	40	3.7	38	72	18	100	41	4	1	52	1.29
41973608--41973756	59	2.5	59	77	10	153	39	4	1	54	1.30
41973599--41973766	38	4.3	38	69	16	96	39	4	1	54	1.27
41973716--41973790	38	2.0	38	82	12	93	33	5	1	60	1.28
41975426--41975462	15	2.4	15	90	4	56	83	0	5	10	0.79
41978835--41978860	10	2.6	10	100	0	52	19	26	11	42	1.85
41983605--41983662	30	1.9	30	100	0	116	31	31	20	17	1.96
41985349--41985459	46	2.4	46	82	5	118	21	28	21	27	1.99
41986677--41987397	44	16.2	44	75	4	518	29	21	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986677--41987393	89	8.1	89	72	7	274	29	21	15	33	1.94
41986677--41987397	133	5.4	133	76	6	589	29	21	15	33	1.94
41993296--41993327	4	8.0	4	92	0	55	71	0	3	25	1.00
42000286--42000329	24	1.9	24	81	9	56	43	2	0	54	1.12
42000282--42000329	23	2.0	24	84	11	64	43	2	0	54	1.12
42000859--42000947	43	2.1	43	97	0	169	42	6	21	29	1.78
42002045--42002223	87	2.1	87	95	0	322	30	19	22	27	1.98
42004702--42004731	15	2.0	15	93	0	51	30	0	3	66	1.07
42010592--42010623	5	6.6	5	92	7	57	81	0	0	18	0.70
42010593--42010623	9	3.3	9	95	4	53	80	0	0	19	0.71
42011857--42011904	25	1.9	25	100	0	96	27	18	8	45	1.78
42013522--42013591	35	2.0	35	97	0	131	54	15	10	20	1.69
42015411--42015465	25	2.2	25	80	3	67	27	3	7	61	1.39
42024067--42024133	30	2.3	29	89	2	98	22	13	13	50	1.76
42034227--42034263	19	1.9	19	88	0	56	59	0	2	37	1.12
42034236--42034277	19	2.2	19	87	8	59	54	0	2	42	1.13
42034202--42034300	10	10.3	10	67	12	55	59	0	3	37	1.13
42034231--42034299	27	2.3	30	85	11	90	57	0	1	40	1.07
42034221--42034307	17	5.4	16	73	19	56	57	0	2	40	1.11
42034551--42034686	25	5.1	26	74	15	93	30	4	2	63	1.26
42034573--42034748	9	19.6	9	68	17	82	31	2	1	63	1.19
42034526--42034666	56	2.5	53	83	11	158	28	4	2	63	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42034629--42034685	17	3.4	16	83	9	60	28	3	1	66	1.18
42042538--42042572	18	1.9	18	100	0	70	51	0	14	34	1.42
42044148--42044196	4	12.2	4	87	8	73	22	2	0	75	0.90
42046079--42046103	13	1.9	13	100	0	50	8	24	40	28	1.83
42054385--42054434	20	2.6	19	84	9	57	42	0	22	36	1.54
42055005--42055212	46	4.4	47	77	8	201	28	18	29	23	1.98
42055005--42055212	94	2.2	92	84	5	265	28	18	29	23	1.98
42055236--42055408	49	3.6	48	75	5	161	27	17	28	26	1.98
42055134--42055408	142	1.9	145	82	5	344	26	17	28	28	1.97
42066107--42066134	13	2.2	13	100	0	56	53	7	14	25	1.66
42080926--42080965	21	1.9	21	89	0	62	55	5	10	30	1.54
42082283--42082509	48	4.9	48	76	7	225	29	24	19	25	1.98
42088934--42089034	27	4.0	26	78	16	122	30	7	23	37	1.84
42090702--42090811	27	4.2	25	76	15	107	16	24	22	36	1.94
42090702--42090832	25	5.0	26	74	18	112	18	23	22	35	1.95
42090759--42090821	27	2.2	29	86	10	87	22	26	15	34	1.94
42099412--42099639	48	4.9	48	77	7	234	29	24	19	25	1.98
42102852--42102999	67	2.2	66	83	8	174	32	17	28	21	1.96
42105515--42105687	43	4.0	43	72	9	147	30	26	15	28	1.95
42106165--42106272	26	4.2	26	92	2	173	33	7	23	36	1.83
42107447--42107486	8	5.0	8	93	0	62	45	25	25	5	1.73
42107899--42108066	27	6.2	27	85	5	207	17	24	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42107899--42108084	81	2.3	80	83	6	232	17	24	21	36	1.95
42110765--42110798	12	2.9	12	95	4	61	61	17	8	11	1.54
42118683--42118709	13	2.1	13	100	0	54	14	22	11	51	1.73
42132278--42132410	44	3.0	45	80	3	151	35	14	22	27	1.93
42139740--42139890	28	5.4	28	94	1	241	27	11	27	33	1.92
42139740--42139904	83	2.0	85	85	6	228	28	11	25	34	1.91
42147756--42147906	28	5.4	28	94	1	241	27	11	27	33	1.92
42147756--42147920	83	2.0	85	85	6	228	28	11	25	34	1.91
42150904--42151018	44	2.6	44	81	2	131	36	13	20	29	1.91
42154467--42154527	30	2.0	30	93	0	104	42	19	16	21	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295