genome.fa.s2.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  211  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72570233--72570312	23	3.4	23	80	1	88	38	18	20	22	1.93
72576639--72576809	93	1.8	93	96	0	315	29	29	20	21	1.98
72576634--72576806	46	3.7	46	79	13	219	30	28	20	21	1.98
72578565--72578606	19	2.3	18	88	8	59	66	2	0	30	1.04
72578750--72578784	3	11.7	3	100	0	70	68	0	0	31	0.90
72579254--72579319	20	3.0	20	80	20	78	24	1	0	74	0.91
72579262--72579308	6	7.7	6	81	13	60	25	2	0	72	0.96
72579287--72579331	19	2.3	20	80	3	56	26	2	0	71	0.98
72583142--72583192	25	2.0	25	100	0	102	39	19	11	29	1.87
72584450--72584507	29	2.0	30	89	3	91	46	20	1	31	1.61
72586080--72586114	18	1.9	18	88	11	54	57	2	5	34	1.37
72592367--72592425	30	1.9	31	83	10	77	49	3	1	45	1.28
72593697--72593768	33	2.2	33	92	0	117	37	15	2	44	1.61
72594832--72594863	13	2.5	13	95	5	57	50	9	0	40	1.35
72597725--72597830	47	2.3	45	78	12	115	22	17	20	38	1.93
72601748--72601903	82	1.9	81	85	3	215	26	16	28	28	1.97
72601747--72601900	55	2.9	52	82	7	175	27	16	27	27	1.97
72601748--72601903	27	5.7	27	81	6	163	26	16	28	28	1.97
72601740--72601924	27	6.8	27	75	9	101	26	16	28	29	1.97
72601740--72601924	82	2.3	81	78	2	210	26	16	28	29	1.97
72612282--72612457	46	3.8	46	79	14	209	20	20	29	29	1.98
72612279--72612450	93	1.8	93	95	2	310	20	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72620116--72620245	44	3.0	45	80	10	144	26	29	18	25	1.98
72620364--72620435	28	2.6	28	88	0	99	29	27	12	30	1.93
72623807--72624093	139	2.1	139	96	1	524	29	24	16	29	1.97
72639467--72639545	37	2.1	37	90	0	122	25	31	18	24	1.98
72639664--72640088	47	9.1	47	94	1	683	28	30	9	31	1.88
72644717--72644751	17	2.0	18	88	5	54	14	25	37	22	1.92
72644979--72645069	27	3.4	27	83	1	121	38	18	17	25	1.92
72645422--72645476	28	2.0	28	88	0	83	27	16	21	34	1.95
72649167--72649257	27	3.4	27	83	1	121	38	18	17	25	1.92
72649542--72649606	21	3.0	21	80	4	67	4	4	50	40	1.43
72653994--72654054	24	2.5	24	86	5	79	34	29	16	19	1.94
72672062--72672134	36	2.0	36	94	0	128	20	15	10	53	1.71
72684233--72684284	26	2.0	26	96	0	95	28	34	23	13	1.92
72684201--72684467	105	2.6	103	91	3	437	29	30	20	18	1.97
72691217--72691484	104	2.6	105	93	1	450	29	30	20	18	1.97
72696121--72696167	20	2.3	20	100	0	94	23	6	23	46	1.75
72699463--72699505	20	2.2	20	95	0	77	18	13	6	60	1.55
72703211--72703377	67	2.5	66	81	7	169	31	16	29	22	1.96
72703235--72703420	67	2.9	64	77	8	189	29	17	29	23	1.97
72713978--72714025	23	2.1	23	100	0	96	50	8	16	25	1.73
72720206--72720233	13	2.2	13	100	0	56	28	0	42	28	1.56
72724677--72724720	20	2.3	19	81	14	54	47	22	0	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72729372--72729479	55	2.0	55	90	0	171	27	29	24	18	1.98
72733016--72733143	29	4.5	28	88	2	175	32	25	12	28	1.92
72733015--72733143	57	2.3	57	87	2	188	32	26	12	28	1.92
72740485--72740545	25	2.4	25	86	2	77	29	26	24	19	1.99
72740599--72740653	20	2.8	20	86	10	71	34	18	10	36	1.86
72748694--72748907	52	4.3	51	75	13	178	25	14	27	32	1.95
72752632--72752859	46	5.0	46	88	1	305	21	25	14	39	1.91
72757114--72757270	43	3.7	43	81	3	172	29	15	22	31	1.95
72758814--72758902	44	2.0	44	95	0	160	41	6	8	42	1.63
72759003--72759149	75	2.0	75	87	0	213	30	13	8	46	1.74
72759320--72759400	40	2.0	40	100	0	162	44	7	19	28	1.78
72760015--72760074	30	2.0	30	87	6	86	36	6	26	30	1.82
72760718--72760963	49	4.9	50	83	2	307	26	18	26	28	1.98
72764508--72764568	24	2.5	25	78	10	72	29	18	26	26	1.98
72767085--72767110	10	2.6	10	100	0	52	30	11	7	50	1.67
72772525--72772549	13	1.9	13	100	0	50	32	16	8	44	1.76
72774763--72774795	13	2.6	13	90	4	50	39	0	12	48	1.40
72776263--72776351	46	1.9	46	97	0	169	24	17	12	44	1.83
72783974--72784059	31	2.8	31	91	1	138	23	29	17	30	1.97
72784264--72784349	26	3.4	26	81	10	81	26	22	23	27	1.99
72784277--72784349	26	2.9	25	86	8	103	27	21	26	24	2.00
72784479--72784526	25	1.9	25	91	0	78	29	14	22	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72805043--72805121	31	2.5	31	97	0	149	27	26	17	27	1.98
72805145--72805236	42	2.2	42	94	3	159	40	20	11	27	1.88
72805374--72805504	26	5.2	26	88	2	189	29	22	19	28	1.98
72805374--72805504	52	2.6	51	92	4	214	29	22	19	28	1.98
72805554--72805621	20	3.4	20	85	4	84	33	19	7	39	1.79
72805656--72805703	25	1.9	25	86	0	69	27	14	22	35	1.93
72806422--72806744	27	11.9	27	79	5	240	30	8	20	40	1.81
72806732--72806940	27	7.7	27	85	0	265	40	8	22	28	1.83
72806605--72806933	54	6.1	54	80	3	162	36	8	21	32	1.84
72806533--72806780	134	1.9	134	81	3	302	31	8	21	38	1.84
72806732--72806940	81	2.6	80	91	0	328	40	8	22	28	1.83
72809299--72809345	19	2.3	20	82	10	60	36	0	14	48	1.44
72809743--72809931	50	3.8	50	78	4	218	24	16	26	31	1.97
72809748--72809932	101	1.8	101	88	0	280	24	17	26	30	1.97
72814628--72814738	56	2.0	56	84	7	145	33	25	12	28	1.92
72815896--72815928	15	2.2	16	89	10	52	54	21	0	24	1.45
72817777--72817891	46	2.6	44	83	5	142	26	17	28	26	1.98
72817671--72817940	139	1.9	140	79	5	305	29	16	28	25	1.97
72828474--72828510	18	2.1	18	100	0	74	51	10	10	27	1.70
72831240--72831467	48	4.8	48	86	1	269	26	30	17	25	1.98
72831244--72831466	95	2.3	95	83	0	275	26	30	18	25	1.98
72833459--72833493	19	1.9	19	88	11	56	31	28	0	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72836456--72836512	26	2.2	26	87	0	78	29	19	19	31	1.96
72848218--72848277	24	2.5	24	86	5	77	20	15	30	35	1.93
72859170--72859230	24	2.5	24	86	5	79	19	16	29	34	1.94
72862745--72862860	54	2.1	54	87	3	162	31	13	17	37	1.89
72862745--72862902	27	5.9	27	74	3	113	29	15	16	37	1.90
72863251--72863314	18	3.5	18	85	4	83	23	21	14	40	1.90
72865249--72865325	34	2.3	34	97	0	145	28	0	44	27	1.55
72867429--72867516	27	3.3	26	85	4	113	19	20	22	37	1.94
72871462--72871541	40	2.0	40	100	0	160	30	22	17	30	1.97
72878290--72878489	40	5.0	40	91	0	303	20	20	30	29	1.98
72878478--72878608	43	3.0	43	81	0	154	12	20	30	35	1.91
72878739--72878793	25	2.2	25	87	6	76	29	12	32	25	1.93
72878784--72878876	45	2.1	45	97	0	177	22	18	30	29	1.97
72886055--72886141	27	3.3	26	83	4	102	21	22	19	35	1.96
72887708--72887797	27	3.3	27	89	3	137	31	15	16	36	1.90
72887708--72887823	27	4.3	27	84	4	119	31	17	16	34	1.92
72887708--72887831	54	2.3	54	84	5	153	29	17	16	35	1.93
72888183--72888223	18	2.3	18	86	0	55	19	21	12	46	1.82
72890721--72890826	44	2.5	43	79	13	119	23	16	26	33	1.95
72890708--72890880	43	4.0	43	73	12	140	25	16	25	32	1.96
72891698--72891739	21	2.0	21	85	4	57	38	2	21	38	1.67
72898270--72898397	44	3.0	43	77	12	129	22	16	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72901430--72901491	31	2.0	31	96	0	115	30	22	8	38	1.83
72910435--72910481	22	2.1	22	88	0	67	46	10	4	38	1.58
72912475--72912561	43	2.0	45	86	4	124	52	1	24	21	1.53
72912480--72912544	15	4.4	16	69	25	61	53	1	26	18	1.53
72920718--72920762	23	1.9	24	86	4	65	22	26	11	40	1.87
72920873--72921082	55	3.9	55	79	9	227	21	25	16	35	1.95
72930138--72930180	16	2.8	15	75	6	50	39	18	0	41	1.51
72936332--72936383	3	16.3	3	76	11	50	28	0	3	67	1.08
72936341--72936376	12	2.8	13	91	8	56	25	0	5	69	1.10
72936355--72936405	21	2.4	21	90	6	77	23	3	5	66	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295