genome.fa.s2.2.7.7.80.10.50.1000.257.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  257  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88571341--88571380	19	2.1	19	100	0	80	35	22	20	22	1.96
88572543--88572660	31	4.0	30	71	17	86	49	9	16	24	1.75
88573032--88573080	22	2.2	22	100	0	98	63	8	4	24	1.40
88573469--88573499	6	5.2	6	100	0	62	0	19	48	32	1.49
88573836--88573876	17	2.4	17	100	0	82	12	17	31	39	1.86
88575100--88575128	12	2.3	13	94	5	51	27	0	68	3	1.05
88579788--88579818	8	3.9	8	100	0	62	77	0	0	22	0.77
88579788--88579827	16	2.5	16	91	0	62	72	2	0	25	0.97
88580317--88580341	5	5.0	5	100	0	50	0	0	80	20	0.72
88580404--88580446	16	2.5	17	77	7	52	58	0	0	41	0.98
88583267--88583386	34	3.6	35	76	14	146	33	1	20	45	1.61
88583266--88583815	30	17.8	29	68	18	215	36	2	20	41	1.64
88583266--88583777	64	8.2	64	71	14	338	36	1	20	41	1.64
88583378--88583430	22	2.4	22	90	0	79	41	0	16	41	1.49
88583314--88583493	86	2.1	86	94	0	315	36	1	18	43	1.61
88583473--88583558	42	2.0	42	90	0	136	43	1	17	38	1.57
88583515--88583815	64	5.0	57	80	11	343	35	1	22	39	1.66
88583295--88583815	121	4.2	121	77	9	545	36	2	20	40	1.65
88583708--88583909	101	1.9	98	85	10	269	34	2	22	41	1.67
88583974--88584466	126	3.9	127	86	2	636	38	16	17	26	1.91
88585269--88585309	21	1.9	22	85	5	57	53	19	4	21	1.63
88597015--88597113	42	2.4	41	78	13	103	30	25	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88604075--88604123	25	2.0	25	92	8	82	48	14	4	32	1.62
88606756--88606814	29	2.0	29	100	0	118	33	20	13	32	1.91
88608722--88608987	49	5.6	49	72	12	200	24	28	20	27	1.99
88612223--88612487	50	5.6	47	77	8	259	24	29	18	26	1.98
88612223--88612500	95	2.9	95	84	2	351	24	29	18	26	1.98
88617205--88617256	26	2.0	26	100	0	104	42	0	11	46	1.40
88632280--88632386	55	1.9	55	98	0	205	12	15	40	31	1.85
88632705--88632762	30	1.9	30	89	0	89	15	15	37	31	1.89
88633260--88633291	7	4.6	7	100	0	64	59	12	0	28	1.34
88634376--88634415	13	3.1	13	81	0	53	27	27	30	15	1.96
88638165--88638263	28	3.5	28	91	0	162	31	30	13	25	1.93
88641516--88641622	48	2.4	47	80	14	111	29	23	15	30	1.96
88653594--88653648	23	2.4	23	90	0	83	18	0	49	32	1.48
88662301--88662364	31	2.1	31	96	0	119	26	14	21	37	1.92
88668940--88669170	48	4.9	48	76	9	215	29	22	19	27	1.98
88672061--88672177	43	2.8	42	75	2	117	30	24	17	27	1.97
88676730--88676826	28	3.5	26	87	2	113	30	28	14	25	1.95
88676730--88676902	27	6.6	27	77	14	137	28	27	15	27	1.96
88681173--88681215	10	3.9	10	78	21	50	51	23	0	25	1.49
88683931--88683972	22	1.9	22	90	0	66	45	26	4	23	1.73
88695504--88695686	77	2.3	81	84	8	243	25	27	22	24	2.00
88695485--88695686	40	5.1	40	85	7	245	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88699556--88699580	13	1.9	13	100	0	50	32	4	24	40	1.73
88702665--88702719	26	2.1	26	96	0	101	36	23	5	34	1.78
88702812--88703174	46	7.7	46	74	14	149	24	29	18	27	1.98
88707319--88707373	21	2.6	21	78	16	60	27	25	27	20	1.99
88708640--88708668	14	2.0	15	93	6	51	24	0	20	55	1.44
88710008--88710067	27	2.3	26	85	2	75	35	20	23	21	1.96
88712096--88712262	45	3.7	45	90	0	244	21	15	29	33	1.94
88713719--88713847	50	2.6	50	83	8	165	23	33	17	25	1.96
88713715--88714028	46	6.6	49	71	14	173	23	28	18	28	1.98
88729567--88729645	41	1.9	42	84	7	108	58	1	5	35	1.28
88729565--88729648	17	4.8	17	71	20	66	60	1	4	33	1.25
88729694--88729732	17	2.4	16	87	12	53	61	2	0	35	1.10
88729655--88729741	16	5.1	17	74	15	58	57	2	4	35	1.32
88729693--88729767	28	2.8	27	76	8	73	58	1	1	38	1.15
88729693--88729799	41	2.6	42	78	10	114	60	1	1	35	1.18
88732401--88732434	4	9.0	4	87	12	54	23	0	0	76	0.79
88743486--88743516	15	2.1	15	93	0	53	64	0	0	35	0.94
88743532--88743579	19	2.5	19	80	12	55	68	6	0	25	1.12
88743620--88743701	44	1.9	42	82	9	103	58	1	4	35	1.27
88743585--88743701	23	5.3	22	72	18	73	59	1	5	32	1.31
88743750--88743788	17	2.4	16	87	12	53	61	2	0	35	1.10
88743711--88743797	16	5.1	17	74	15	58	57	2	4	35	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88743749--88743823	28	2.8	27	76	8	73	58	1	1	38	1.15
88743749--88743855	41	2.6	42	78	10	114	60	1	1	35	1.18
88748667--88748740	37	2.0	37	97	0	139	41	18	12	27	1.86
88751006--88751061	27	2.0	28	83	16	71	62	14	0	23	1.31
88752873--88752951	29	2.9	28	74	23	78	49	3	0	46	1.19
88757417--88757445	6	4.8	6	100	0	58	68	17	13	0	1.20
88757901--88757966	11	5.6	11	75	18	62	21	4	4	69	1.24
88760851--88760892	20	2.1	20	90	0	66	73	2	0	23	0.94
88767526--88767743	40	5.5	40	91	2	325	23	22	27	25	2.00
88774375--88774567	40	4.8	40	86	3	248	24	21	25	27	1.99
88774360--88774567	80	2.6	80	83	3	303	25	22	25	26	2.00
88777433--88777476	18	2.4	18	100	0	88	34	20	15	29	1.94
88784633--88784721	28	3.2	28	95	0	151	33	25	8	31	1.87
88784827--88784916	28	3.2	27	85	7	119	20	24	23	32	1.98
88784837--88784916	27	2.9	28	86	5	99	21	25	21	32	1.98
88784827--88784941	55	2.1	56	82	8	137	20	23	21	34	1.96
88785379--88785417	19	2.1	19	85	0	51	15	5	7	71	1.26
88786002--88786035	10	3.3	10	84	8	50	29	8	8	52	1.62
88792518--88792610	28	3.3	28	89	0	141	33	24	9	32	1.88
88792716--88792777	27	2.2	29	85	5	83	20	25	22	30	1.98
88792734--88792788	29	1.9	28	85	3	74	23	23	20	32	1.98
88793241--88793279	19	2.1	19	85	0	51	15	5	7	71	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88797775--88797821	21	2.3	21	79	20	55	59	12	4	23	1.51
88798011--88798052	22	1.9	22	90	0	66	47	14	16	21	1.82
88808935--88808977	16	2.9	15	86	10	54	9	25	0	65	1.22
88808935--88808977	13	2.9	15	86	10	54	9	25	0	65	1.22
88810376--88810506	27	4.9	27	87	6	178	35	22	24	17	1.95
88810383--88810506	54	2.3	54	97	0	230	34	24	25	16	1.95
88812121--88812228	26	4.2	26	91	0	180	36	23	7	33	1.83
88813073--88813181	47	2.3	48	87	1	157	26	22	15	35	1.94
88813148--88813319	93	1.8	94	82	6	224	27	22	15	34	1.94
88817390--88817427	20	1.9	19	85	15	51	63	2	0	34	1.09
88817640--88817705	3	21.0	3	74	20	55	60	4	1	33	1.26
88817640--88817705	7	10.5	6	75	18	55	60	4	1	33	1.26
88817648--88817705	17	3.3	16	81	16	55	60	3	1	34	1.24
88817620--88817763	43	3.4	43	77	12	111	60	2	3	33	1.28
88817664--88817714	17	2.9	17	85	8	59	58	1	0	39	1.09
88817641--88817723	7	12.1	7	73	16	50	57	3	1	37	1.24
88817664--88817774	41	2.7	41	77	10	118	61	1	2	34	1.21
88819406--88819983	119	4.9	119	94	0	944	30	18	17	33	1.94
88831821--88831858	20	1.9	19	85	15	51	63	2	0	34	1.09
88832053--88832118	33	1.9	34	81	6	80	60	4	3	31	1.32
88832050--88832124	33	2.3	31	78	13	78	61	4	2	32	1.28
88832093--88832133	17	2.4	17	88	8	57	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88832675--88832699	8	3.1	8	100	0	50	12	64	24	0	1.27
88836793--88836821	12	2.4	12	100	0	58	6	13	51	27	1.66
88836791--88836823	12	2.5	13	85	14	50	6	15	48	30	1.69
88837480--88837678	5	39.8	5	93	0	326	38	0	20	41	1.56
88846327--88846410	42	2.0	42	92	0	141	28	14	17	39	1.89
88849662--88849900	47	5.1	47	95	0	379	31	12	30	24	1.93
88849710--88849784	23	3.2	23	62	23	57	29	12	32	26	1.92
88849874--88849992	46	2.6	46	82	0	148	34	10	29	26	1.89
88860076--88860133	30	1.9	30	89	0	89	37	10	22	29	1.87
88860478--88860603	47	2.7	46	83	8	146	27	20	31	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295