genome.fa.s2.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  202  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69118956--69119216	40	6.6	40	91	4	390	27	26	21	24	1.99
69127044--69127305	40	6.6	40	93	1	420	25	25	22	25	2.00
69129875--69130080	40	5.2	40	91	2	335	24	21	25	28	1.99
69129860--69130080	80	2.8	80	94	2	374	25	21	24	28	1.99
69136598--69136625	13	2.2	13	100	0	56	28	0	14	57	1.38
69138043--69138328	40	7.2	39	88	6	423	25	22	23	28	1.99
69138027--69138328	80	3.8	80	93	2	502	26	21	23	28	1.99
69143169--69143330	43	3.8	43	77	6	157	34	24	14	27	1.93
69144962--69145000	14	2.8	15	88	11	57	46	23	10	20	1.81
69146742--69146785	22	2.0	21	83	12	54	43	38	4	13	1.65
69148062--69148117	28	2.0	28	89	0	85	35	19	14	30	1.91
69155118--69155143	11	2.4	11	100	0	52	15	38	15	30	1.88
69155747--69155793	24	2.0	23	87	4	67	29	23	27	19	1.98
69157757--69157816	20	3.1	18	75	20	50	40	20	26	13	1.89
69160649--69160689	20	2.0	20	95	0	73	9	7	24	58	1.55
69164168--69164231	13	4.9	13	82	0	83	29	7	26	35	1.85
69164168--69164232	26	2.5	26	82	2	94	30	7	26	35	1.84
69165986--69166031	21	2.2	20	88	7	74	32	0	13	54	1.39
69167293--69167363	29	2.5	30	81	9	94	60	1	4	33	1.25
69167876--69167955	29	2.9	27	80	12	90	57	0	1	41	1.07
69167876--69168015	10	14.8	10	72	18	79	56	0	3	39	1.22
69167876--69168026	18	8.1	19	70	20	79	56	0	3	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69167873--69168026	38	4.1	35	75	12	130	55	0	3	40	1.21
69167879--69167964	28	3.0	28	83	10	95	54	0	3	41	1.17
69167873--69168000	9	14.0	8	70	24	51	56	0	3	39	1.23
69167876--69167982	28	3.8	27	79	11	90	57	0	2	39	1.20
69168610--69168711	10	9.9	10	75	15	84	36	4	0	57	1.27
69168589--69168654	9	6.8	9	75	16	60	33	1	0	65	1.02
69168590--69168712	20	6.0	20	78	10	97	33	4	0	60	1.23
69168799--69168863	21	3.5	18	70	27	55	29	4	0	66	1.12
69171245--69171279	17	2.0	18	88	5	54	51	2	11	34	1.53
69172441--69172469	14	2.1	14	93	6	51	37	31	3	27	1.73
69178383--69178644	40	6.6	40	84	5	273	25	20	27	25	1.99
69178436--69178644	79	2.6	77	84	5	247	25	21	28	25	1.99
69178497--69178679	79	2.3	79	83	4	219	27	20	27	25	1.99
69185966--69186228	40	6.6	40	85	4	282	25	21	27	25	1.99
69185967--69186263	80	3.7	80	81	6	230	26	21	27	24	1.99
69190925--69190964	21	1.9	21	100	0	80	17	0	35	47	1.48
69194592--69194861	46	5.7	47	71	16	175	24	30	18	27	1.98
69205292--69205326	18	1.9	18	88	0	52	5	34	8	51	1.56
69217724--69217838	56	2.1	56	100	0	230	24	28	5	41	1.76
69221206--69221254	24	2.0	24	100	0	98	34	4	48	12	1.59
69223239--69223405	40	4.2	40	80	2	149	25	26	23	24	2.00
69224594--69224669	38	2.0	38	94	0	134	31	25	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69230403--69230453	13	4.3	11	85	14	66	50	1	0	47	1.12
69230403--69230453	24	2.1	24	92	0	84	50	1	0	47	1.12
69230550--69230606	15	3.5	15	71	17	51	47	3	1	47	1.29
69238075--69238237	40	4.1	40	91	2	240	23	20	27	28	1.99
69246027--69246232	40	5.2	40	94	0	342	23	21	27	27	1.99
69254182--69254215	17	2.1	16	88	5	50	76	14	0	8	1.01
69255897--69255943	17	2.7	17	81	15	60	48	2	0	48	1.13
69255920--69255960	14	2.9	14	88	0	55	41	4	2	51	1.36
69257636--69257705	27	2.5	28	77	13	72	60	1	4	34	1.25
69270992--69271139	43	3.4	44	82	3	167	29	14	22	33	1.94
69281174--69281447	136	2.0	136	97	1	514	32	11	17	38	1.86
69284560--69284627	35	2.0	35	88	8	104	42	2	0	54	1.15
69286792--69286843	24	2.1	25	82	10	63	34	1	13	50	1.53
69287212--69287261	24	2.1	24	100	0	100	60	4	0	36	1.16
69288739--69288990	137	1.8	137	86	0	360	22	21	25	31	1.98
69290491--69290622	47	2.8	48	87	1	185	33	27	15	23	1.95
69290498--69290622	48	2.6	47	88	1	178	32	28	16	23	1.95
69293448--69293494	20	2.3	20	100	0	94	21	29	31	17	1.96
69295547--69295572	12	2.2	12	100	0	52	19	42	30	7	1.79
69298935--69298985	25	2.0	26	92	3	86	9	7	33	49	1.65
69302695--69302756	31	2.0	31	100	0	124	32	22	16	29	1.95
69308548--69308601	27	2.0	27	92	0	90	27	12	20	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69310549--69310703	73	2.1	73	77	2	159	30	18	21	29	1.97
69314943--69315262	160	2.0	160	95	2	572	31	17	18	32	1.94
69315546--69315590	22	2.0	22	100	0	90	33	13	22	31	1.92
69317158--69317311	43	3.6	44	70	15	135	24	18	30	26	1.98
69331057--69331087	16	2.0	15	93	6	53	16	6	0	77	0.97
69334221--69334273	20	3.0	17	77	17	54	47	0	1	50	1.12
69334234--69334273	20	2.0	20	85	9	55	42	0	0	57	0.98
69336790--69336894	47	2.2	47	94	0	183	27	31	7	33	1.85
69343467--69343624	43	3.7	43	81	5	167	34	23	13	27	1.93
69343521--69343627	42	2.5	42	86	4	144	37	25	13	24	1.91
69362527--69362623	42	2.3	42	87	0	149	21	35	25	17	1.95
69370823--69370860	19	2.0	20	85	15	53	39	23	0	36	1.55
69371090--69371260	93	1.8	93	91	0	279	29	28	19	21	1.98
69371085--69371257	46	3.7	46	78	13	192	30	27	19	21	1.98
69373992--69374049	28	2.1	28	100	0	116	37	3	24	34	1.72
69379385--69379425	19	2.2	19	100	0	82	31	9	26	31	1.89
69379405--69379555	42	3.6	42	77	1	131	33	11	23	30	1.91
69383181--69383281	42	2.4	42	93	3	168	24	25	21	27	1.99
69384901--69384962	24	2.6	24	84	5	72	24	17	25	32	1.97
69389694--69389871	40	4.5	40	91	3	263	24	24	27	24	2.00
69397674--69397890	40	5.5	40	93	3	343	23	23	28	24	2.00
69400572--69400879	40	7.6	39	83	8	384	25	29	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69400572--69400879	83	3.8	81	93	3	469	25	29	22	22	1.99
69400572--69400879	123	2.5	120	84	7	399	25	29	22	22	1.99
69407236--69407285	21	2.3	22	82	3	57	18	6	2	74	1.12
69413076--69413310	114	2.1	114	99	0	461	39	13	12	34	1.83
69413860--69413893	11	3.1	11	95	0	59	11	8	14	64	1.49
69418386--69418473	45	2.0	45	93	0	149	21	21	28	28	1.99
69423643--69423839	55	3.6	54	81	4	200	21	22	18	37	1.94
69423657--69423828	55	3.2	53	82	7	204	21	23	18	36	1.95
69423673--69423839	54	3.1	53	81	8	203	22	25	16	36	1.94
69424558--69424598	20	2.0	21	85	4	57	24	24	14	36	1.93
69429652--69429784	51	2.6	51	76	0	140	41	6	11	41	1.65
69431466--69431755	96	3.0	96	92	1	456	35	17	34	13	1.88
69432662--69432794	51	2.6	51	78	0	149	40	6	11	41	1.67
69434015--69434049	17	1.9	19	88	11	56	20	2	11	65	1.37
69435140--69435208	9	7.4	9	80	9	68	39	1	0	59	1.06
69435140--69435216	19	4.2	19	77	9	79	37	2	0	59	1.11
69435186--69435254	10	7.3	9	72	18	52	28	2	1	66	1.14
69435210--69435253	8	5.0	8	82	17	52	25	2	2	70	1.10
69435204--69435244	19	2.2	19	95	0	73	21	4	2	70	1.18
69435212--69435271	20	3.1	19	81	13	61	23	3	1	71	1.10
69435231--69435271	20	2.0	20	90	9	66	24	2	0	73	0.96
69435148--69435253	9	11.7	9	76	15	53	32	2	0	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69435190--69435289	27	3.7	27	75	10	87	31	3	2	64	1.20
69435439--69435509	34	2.2	32	85	7	90	21	5	19	53	1.65
69436327--69436371	23	2.0	23	100	0	90	48	8	11	31	1.69
69438225--69438322	35	2.8	35	74	9	92	32	9	16	41	1.80
69443623--69443691	35	2.0	35	100	0	138	42	23	5	28	1.77
69447908--69447948	21	2.0	21	90	4	66	39	0	19	41	1.52
69451614--69451647	15	2.2	16	89	5	52	52	0	2	44	1.16
69452773--69452880	50	2.2	50	91	0	171	47	5	24	23	1.73
69455454--69455558	42	2.5	42	87	0	147	15	25	32	26	1.95
69461865--69461955	34	2.7	34	87	0	128	29	7	31	30	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295