genome.fa.s2.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  147  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50114193--50114253	8	6.9	8	74	18	50	49	0	3	47	1.18
50122107--50122426	47	6.7	48	72	10	194	24	27	20	28	1.99
50125805--50126024	40	5.6	40	80	4	223	26	24	23	25	2.00
50132606--50132768	46	3.5	46	79	13	165	23	28	19	28	1.98
50140686--50140763	39	2.0	39	100	0	156	30	20	15	33	1.94
50148830--50149011	49	3.7	49	80	2	220	28	27	17	26	1.98
50148822--50149009	100	1.9	100	92	0	313	28	26	18	26	1.98
50152124--50152179	28	2.0	28	96	0	103	33	26	3	35	1.74
50174789--50175009	49	4.6	47	80	9	202	25	28	20	25	1.99
50174789--50175009	46	4.6	47	76	16	179	25	28	20	25	1.99
50180095--50180145	25	2.0	25	100	0	102	27	15	19	37	1.92
50180697--50180736	19	2.0	20	85	4	55	40	15	0	45	1.46
50181837--50181884	18	2.5	19	80	12	53	45	10	18	25	1.81
50183315--50183344	15	1.9	15	93	6	51	16	0	26	56	1.40
50188334--50188372	17	2.3	17	86	8	53	15	30	12	41	1.85
50203854--50204036	79	2.3	81	84	7	232	25	27	22	24	2.00
50203833--50204036	40	5.1	40	82	8	238	25	27	22	24	2.00
50212025--50212248	40	5.6	40	83	8	269	24	27	22	25	2.00
50212027--50212249	119	1.9	120	83	6	292	24	27	22	25	2.00
50215569--50215615	24	2.0	24	91	0	76	36	2	38	23	1.67
50217035--50217137	27	3.8	27	82	7	120	16	23	22	37	1.93
50217035--50217144	54	2.0	54	84	3	141	16	22	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50220763--50221211	47	9.5	47	94	0	763	29	29	8	32	1.87
50233391--50233568	40	4.5	40	90	3	254	24	28	23	24	2.00
50237200--50237286	34	2.6	33	81	1	93	26	22	21	28	1.99
50243748--50243805	24	2.5	23	81	16	66	62	0	5	32	1.18
50244076--50244232	49	3.2	49	95	3	275	31	7	29	30	1.85
50244350--50244428	37	2.1	37	90	0	122	24	18	31	25	1.98
50246291--50246392	43	2.4	42	98	1	195	22	15	35	26	1.94
50246376--50246447	29	2.5	29	88	4	101	26	16	31	25	1.96
50246759--50247034	40	6.9	40	82	3	263	25	22	27	25	2.00
50246759--50247035	120	2.3	121	81	4	301	24	22	27	25	2.00
50250151--50250208	24	2.5	23	81	16	66	62	0	5	32	1.18
50250479--50250636	49	3.2	49	96	2	284	31	7	30	30	1.85
50250754--50250832	37	2.1	37	90	0	122	24	18	31	25	1.98
50255427--50255492	27	2.4	27	97	0	123	22	31	21	24	1.98
50258300--50258450	27	5.6	27	81	7	171	29	28	15	26	1.96
50261244--50261797	129	4.1	135	84	9	680	46	6	7	40	1.56
50261244--50261797	275	2.0	268	85	6	733	46	6	7	40	1.56
50264773--50264866	25	3.8	25	76	0	98	30	22	17	29	1.96
50269738--50269975	39	6.1	39	90	0	386	22	23	27	25	2.00
50275049--50275242	39	5.0	39	94	0	325	20	24	29	25	1.99
50278915--50278974	28	2.2	26	77	11	66	26	26	11	35	1.91
50278929--50279000	28	2.6	28	88	0	99	29	27	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50279944--50279976	17	1.9	17	88	11	50	24	9	0	66	1.20
50285177--50285278	44	2.4	41	79	10	114	35	24	15	24	1.94
50288316--50288342	10	2.7	10	100	0	54	59	29	0	11	1.32
50293727--50293766	19	2.0	20	85	4	55	45	0	15	40	1.46
50294318--50294368	25	2.0	25	100	0	102	37	19	15	27	1.92
50295579--50295620	22	2.0	22	90	4	68	21	30	28	19	1.97
50299451--50299676	46	4.7	48	76	14	186	25	21	29	24	1.99
50299456--50299676	49	4.6	47	79	12	211	25	21	28	24	1.99
50299450--50299676	96	2.4	96	82	11	254	25	21	29	24	1.99
50304963--50305045	43	1.9	43	97	0	157	32	8	15	43	1.77
50308835--50308871	19	1.9	19	100	0	74	40	5	37	16	1.71
50316072--50316198	46	2.8	46	86	1	175	24	22	24	28	2.00
50323298--50323423	46	2.7	46	93	0	207	20	20	27	30	1.98
50325934--50326051	45	2.7	43	77	10	116	30	25	18	25	1.98
50327179--50327207	14	2.0	15	93	6	51	51	20	0	27	1.47
50334661--50334710	26	1.9	26	87	0	73	40	22	20	18	1.92
50336355--50336409	24	2.3	24	78	3	67	14	41	3	40	1.63
50341539--50341650	27	4.1	27	82	10	131	37	22	24	16	1.93
50341539--50341650	54	2.1	54	86	3	154	37	22	24	16	1.93
50347657--50347768	27	4.2	26	85	7	143	37	23	24	15	1.93
50347657--50347768	54	2.1	54	88	3	163	37	23	24	15	1.93
50348185--50348214	16	1.9	15	93	6	51	3	20	23	53	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50355855--50355978	42	2.9	43	79	13	157	30	25	18	25	1.98
50356261--50356317	28	2.0	28	93	0	96	40	10	8	40	1.71
50356968--50357121	79	1.9	79	98	0	299	42	17	3	36	1.68
50358067--50358091	13	1.9	13	100	0	50	48	0	0	52	1.00
50360746--50360863	43	2.7	43	89	5	177	24	21	27	27	1.99
50364129--50364316	49	3.8	49	88	1	241	28	18	24	28	1.98
50386389--50386467	37	2.1	37	90	0	122	25	31	18	24	1.98
50386586--50387188	47	12.7	47	94	3	1023	29	29	8	32	1.87
50386586--50387188	96	6.4	94	94	2	1023	29	29	8	32	1.87
50386586--50387188	143	4.2	141	94	2	1023	29	29	8	32	1.87
50388917--50389007	41	2.2	41	88	3	130	34	19	8	37	1.83
50388931--50389012	41	2.0	41	100	0	164	29	19	9	41	1.83
50393689--50393860	93	1.8	93	94	0	308	28	27	20	23	1.99
50393684--50393856	46	3.8	45	79	10	206	29	27	20	23	1.99
50394277--50394333	30	1.9	30	88	0	87	29	24	8	36	1.86
50398279--50398498	79	2.8	79	80	6	205	26	27	20	24	1.99
50398316--50398498	40	4.6	40	80	8	187	27	27	20	24	1.99
50400030--50400156	40	3.2	40	87	3	177	23	21	27	27	1.99
50400393--50400434	22	1.9	22	85	9	59	30	9	14	45	1.77
50407975--50408191	40	5.4	40	83	3	278	23	21	28	26	1.99
50438465--50438490	13	2.0	13	100	0	52	46	0	7	46	1.31
50439537--50439578	18	2.3	18	100	0	84	19	9	40	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50443399--50443548	67	2.2	67	81	8	171	32	17	28	21	1.96
50443423--50443606	67	2.8	64	77	8	185	29	17	29	23	1.97
50445390--50445527	49	2.7	49	85	4	159	34	18	24	21	1.96
50456141--50456324	40	4.7	40	79	8	189	25	22	26	25	2.00
50456197--50456347	79	1.9	79	82	8	191	25	20	27	26	1.99
50468386--50468441	15	3.7	15	87	0	85	10	16	16	57	1.65
50471064--50471153	24	3.7	24	77	2	90	26	16	30	26	1.97
50484237--50484293	30	1.9	30	85	0	78	31	21	7	40	1.80
50489660--50489737	36	2.1	37	90	2	122	25	30	19	24	1.98
50489856--50490174	47	6.7	47	93	2	487	28	30	8	32	1.87
50489906--50489984	25	3.3	25	66	16	76	31	29	5	34	1.79
50498935--50499159	49	4.5	49	81	3	279	29	26	18	25	1.98
50505054--50505133	29	2.8	28	84	3	106	27	31	15	26	1.95
50505357--50505403	16	2.9	16	90	0	67	12	21	21	44	1.85
50505361--50505403	8	5.4	8	85	0	59	11	20	20	46	1.82
50516555--50516677	28	4.4	28	90	2	176	33	28	12	26	1.92
50526621--50526745	46	2.7	46	96	1	225	30	28	20	20	1.98
50527165--50527224	30	2.0	30	90	0	93	30	25	8	36	1.85
50528506--50528631	46	2.7	46	96	0	225	30	27	20	20	1.98
50529052--50529112	30	2.0	30	90	0	95	31	24	8	36	1.85
50530395--50530520	46	2.7	46	96	0	225	30	27	20	20	1.98
50530938--50530997	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50532267--50532391	46	2.7	46	95	1	216	29	28	22	20	1.98
50534144--50534268	46	2.7	46	95	1	216	29	28	21	20	1.98
50534146--50534287	46	3.1	45	87	5	137	28	28	21	21	1.98
50534689--50534748	30	2.0	30	90	0	93	30	25	8	36	1.85
50536747--50536869	46	2.7	46	94	1	212	30	28	19	21	1.97
50537281--50537338	28	2.0	29	90	3	91	32	25	6	34	1.83
50538604--50538728	46	2.7	46	92	1	198	32	27	20	20	1.97
50539142--50539201	29	2.0	29	87	3	84	33	25	8	33	1.86
50540468--50540588	46	2.7	46	94	1	208	30	28	19	20	1.97
50541005--50541064	29	2.0	30	87	3	86	31	25	8	35	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295