genome.fa.s2.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  148  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50543077--50543202	46	2.7	46	97	0	234	30	27	21	20	1.98
50543623--50543681	29	2.0	29	90	3	91	30	25	8	35	1.86
50544961--50545086	46	2.7	46	96	0	225	30	27	20	20	1.98
50545506--50545566	30	2.0	30	90	0	95	31	24	8	36	1.85
50546848--50546973	46	2.7	46	97	0	234	30	27	21	20	1.98
50547395--50547454	30	2.0	30	90	0	93	30	25	8	36	1.85
50551919--50552111	98	2.0	98	95	0	350	36	5	25	31	1.80
50551916--50552114	48	4.1	48	92	2	335	36	5	26	31	1.79
50552263--50552479	37	5.9	37	93	0	353	23	17	32	25	1.97
50555423--50555508	40	2.2	40	93	0	145	29	30	19	20	1.97
50558420--50558480	32	1.9	32	100	0	122	29	18	29	22	1.97
50562113--50562226	24	4.8	24	92	0	183	35	33	13	18	1.89
50562068--50562226	48	3.3	48	85	1	158	36	31	11	20	1.89
50570063--50570178	24	4.8	24	89	0	160	35	30	13	20	1.92
50570018--50570178	72	2.2	72	79	6	184	34	29	13	22	1.92
50581940--50581968	15	2.0	15	93	6	51	55	17	0	27	1.42
50586205--50586446	40	6.1	40	90	3	348	24	21	26	27	1.99
50595807--50595885	31	2.5	31	89	0	113	48	12	18	20	1.81
50595798--50595885	6	14.3	6	73	17	65	47	13	18	20	1.82
50596296--50596529	81	2.9	80	84	2	306	26	17	17	38	1.93
50596280--50596522	27	9.0	27	84	0	270	24	19	18	37	1.94
50596574--50596800	27	8.4	27	84	0	229	30	9	19	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50596606--50596818	54	4.0	54	87	0	266	31	8	19	39	1.83
50599534--50599869	171	2.0	170	92	3	568	33	10	13	42	1.79
50602228--50602490	115	2.3	115	93	0	445	37	14	18	29	1.90
50607226--50607347	46	2.5	49	78	10	135	27	22	13	36	1.91
50614973--50615094	46	2.6	47	82	5	147	27	22	14	35	1.94
50617135--50617284	70	2.1	71	90	6	234	30	29	17	23	1.97
50617297--50617348	26	2.0	26	96	0	95	28	34	23	13	1.92
50617204--50617424	102	2.2	103	92	2	365	31	31	19	18	1.95
50617749--50617812	30	2.2	29	81	10	76	29	28	6	35	1.82
50617756--50617812	30	1.9	30	85	3	80	29	24	7	38	1.82
50618617--50618721	48	2.2	48	94	0	192	31	24	6	37	1.81
50624478--50624844	41	8.9	40	77	13	320	26	29	19	23	1.98
50624478--50624845	40	9.0	41	78	12	341	26	29	20	23	1.98
50628423--50628472	25	2.0	25	92	0	82	30	32	22	16	1.95
50628435--50628583	70	2.1	70	91	2	237	30	29	16	23	1.96
50628503--50628725	104	2.2	103	92	2	367	31	31	18	17	1.95
50629053--50629116	30	2.2	29	81	10	76	29	28	6	35	1.82
50629060--50629116	30	1.9	30	85	3	80	29	24	7	38	1.82
50629933--50630037	48	2.2	48	94	0	192	31	24	6	37	1.81
50633367--50633760	40	9.9	40	90	0	574	26	30	20	21	1.98
50635024--50635169	37	3.9	37	84	3	204	26	30	17	24	1.97
50635029--50635180	74	2.1	74	92	0	250	26	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50635316--50635599	48	5.9	48	94	0	487	31	27	5	35	1.81
50640858--50640980	55	2.2	56	88	2	176	26	12	28	33	1.92
50640858--50640980	28	4.4	28	90	2	176	26	12	28	33	1.92
50640883--50640993	28	4.0	27	90	3	116	28	11	26	33	1.91
50642810--50642892	37	2.2	37	89	0	121	32	31	13	22	1.92
50642879--50642906	14	2.0	14	100	0	56	42	28	14	14	1.84
50642844--50642943	51	2.0	51	100	0	200	32	32	16	20	1.94
50642893--50643009	37	3.1	37	96	1	207	28	31	18	21	1.97
50642810--50642980	88	1.9	88	92	0	288	30	31	15	22	1.95
50642894--50643046	37	4.0	38	90	2	148	27	30	17	24	1.97
50643192--50643316	46	2.7	46	88	0	178	25	30	9	34	1.88
50643302--50643542	47	5.1	47	89	4	331	27	29	10	32	1.90
50645548--50645572	13	1.9	13	100	0	50	0	16	0	84	0.63
50647089--50647577	40	12.2	40	90	0	701	25	27	20	26	1.99
50648849--50649071	37	6.0	37	93	0	347	28	30	17	22	1.97
50649254--50649390	46	3.0	46	90	0	202	26	30	8	35	1.85
50649364--50649510	51	3.1	47	84	8	174	27	28	10	33	1.89
50651515--50651539	13	1.9	13	100	0	50	0	16	0	84	0.63
50662417--50662532	47	2.4	48	91	2	189	36	19	18	25	1.95
50667497--50667656	38	4.2	38	84	3	196	20	20	25	33	1.97
50674731--50674765	17	2.1	17	100	0	70	17	5	25	51	1.67
50675601--50675685	38	2.2	38	89	0	125	22	20	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50675626--50675716	38	2.3	38	84	3	110	21	18	23	36	1.95
50676834--50676872	20	2.0	20	90	5	53	53	2	0	43	1.14
50676841--50676883	20	2.2	20	87	4	61	53	2	0	44	1.13
50686636--50686695	30	2.0	30	90	3	95	40	8	6	45	1.61
50697449--50697509	30	2.0	30	83	0	77	32	22	6	37	1.80
50700389--50700576	40	4.7	40	86	3	247	26	21	26	26	1.99
50712692--50712743	21	2.5	22	81	9	63	76	7	1	13	1.07
50712671--50712738	16	4.2	16	73	19	52	77	7	2	11	1.07
50717119--50717152	16	2.2	15	89	5	50	76	0	8	14	1.01
50717473--50717504	14	2.2	15	94	5	57	81	0	0	18	0.70
50717479--50717511	9	3.3	10	87	12	50	78	0	3	18	0.87
50722348--50722502	43	3.7	42	75	14	133	23	17	25	32	1.96
50727870--50727987	49	2.4	49	87	5	157	27	29	13	28	1.94
50730782--50730930	46	3.1	46	72	14	138	29	28	16	25	1.96
50732757--50732928	40	4.3	40	81	5	179	23	20	27	29	1.99
50732757--50732928	80	2.2	79	84	5	213	23	20	27	29	1.99
50740678--50740842	40	4.2	39	82	6	190	23	21	27	27	1.99
50740678--50740842	80	2.1	79	86	5	226	23	21	27	27	1.99
50743160--50743245	21	4.0	22	79	10	97	38	25	20	15	1.92
50743160--50743246	44	2.0	41	82	6	102	37	25	20	16	1.93
50743436--50743533	28	3.8	23	78	13	70	46	31	4	17	1.66
50743450--50743533	28	3.0	28	89	1	123	46	29	3	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50749867--50749933	33	2.0	33	85	0	89	28	23	23	23	2.00
50750483--50750516	17	2.0	17	88	0	50	17	44	20	17	1.87
50752835--50752860	11	2.4	11	100	0	52	7	0	53	38	1.30
50758612--50758782	46	3.7	45	77	10	175	29	28	19	22	1.98
50760768--50760818	22	2.5	20	83	6	57	58	11	0	29	1.33
50768611--50768863	68	3.9	64	76	13	230	29	16	29	24	1.97
50775414--50775458	19	2.3	20	78	17	51	35	2	2	60	1.22
50779444--50779476	16	2.1	16	94	0	57	12	15	21	51	1.75
50786014--50786044	14	2.2	14	100	0	62	38	12	6	41	1.69
50786554--50786682	46	2.8	46	91	0	195	31	29	20	19	1.97
50795582--50795718	27	5.1	26	76	11	118	36	18	10	33	1.86
50795672--50795737	27	2.4	27	78	9	71	39	16	16	27	1.90
50810312--50810413	43	2.4	43	82	8	120	30	23	16	29	1.96
50818487--50818736	40	6.3	40	82	4	179	26	26	21	24	1.99
50818523--50818736	40	5.3	40	84	2	227	26	26	21	25	1.99
50818487--50818736	80	3.2	79	82	4	281	26	26	21	24	1.99
50818512--50818736	120	1.9	119	81	4	274	27	27	21	24	1.99
50826664--50826928	40	6.7	40	84	3	304	26	27	21	24	1.99
50829257--50829357	43	2.4	42	80	8	107	29	26	20	22	1.99
50835678--50835720	19	2.3	19	87	0	59	51	0	9	39	1.34
50844550--50844619	30	2.4	27	80	20	63	48	1	4	45	1.30
50850900--50850956	29	2.0	29	92	0	96	49	5	19	26	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50852733--50852776	18	2.3	18	84	7	52	36	15	11	36	1.84
50855404--50855515	27	4.1	27	83	7	129	16	24	22	37	1.93
50855404--50855515	54	2.1	54	86	3	154	16	24	22	37	1.93
50856740--50856873	28	4.7	28	76	12	139	26	32	13	26	1.94
50856739--50856885	57	2.6	58	82	9	153	27	31	12	27	1.93
50860193--50860348	82	1.9	81	85	3	215	26	16	28	28	1.97
50860192--50860345	55	2.9	52	82	7	175	27	16	27	27	1.97
50860193--50860348	27	5.7	27	81	6	163	26	16	28	28	1.97
50860185--50860369	27	6.8	27	75	9	101	26	16	28	29	1.97
50860185--50860369	82	2.3	81	78	2	210	26	16	28	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295