genome.fa.s2.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  107  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34849104--34849223	56	2.1	56	98	0	231	22	23	9	45	1.81
34851643--34851684	17	2.5	17	100	0	84	33	19	11	35	1.88
34861415--34861454	21	2.0	21	95	5	73	20	25	40	15	1.90
34864884--34864939	27	2.1	27	96	0	103	32	33	12	21	1.91
34865910--34865935	10	2.6	10	100	0	52	38	0	19	42	1.51
34868831--34868926	24	3.9	24	78	8	111	30	2	5	62	1.28
34877510--34877554	21	2.1	21	83	0	54	26	31	22	20	1.98
34878664--34878805	57	2.5	56	77	10	146	33	22	16	28	1.95
34883703--34883765	28	2.3	27	91	5	99	28	26	11	33	1.91
34887469--34887673	27	7.6	27	83	3	223	26	15	29	29	1.96
34887470--34887673	54	3.8	54	84	3	257	25	15	29	29	1.96
34895621--34895825	27	7.6	27	83	3	223	26	15	29	29	1.96
34895622--34895825	54	3.8	54	84	3	257	25	15	29	29	1.96
34907181--34907437	40	6.4	40	94	1	419	25	27	22	24	2.00
34907592--34907633	16	2.6	16	96	0	75	40	19	9	30	1.83
34911271--34911645	47	7.9	48	78	9	310	23	30	19	26	1.98
34911269--34911685	47	8.9	46	77	14	299	23	29	19	26	1.98
34912799--34912827	10	2.7	11	94	5	51	72	0	0	27	0.85
34915895--34916059	43	3.8	44	73	15	164	31	26	19	22	1.98
34915890--34916064	86	2.0	85	82	7	212	33	26	18	22	1.97
34927454--34927491	12	3.2	12	88	0	58	21	44	0	34	1.52
34937819--34937951	46	2.9	47	85	3	180	30	25	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34945247--34945338	42	2.2	41	84	9	114	58	10	4	26	1.50
34945341--34945380	19	2.2	18	90	4	62	42	12	0	45	1.42
34946704--34946775	36	2.0	36	100	0	144	27	22	11	38	1.88
34949737--34949825	42	2.1	42	87	0	124	52	12	5	29	1.61
34949738--34949847	42	2.6	41	80	9	96	53	11	4	30	1.57
34949850--34949889	19	2.2	18	95	4	71	42	15	0	42	1.46
34953029--34953074	23	2.1	23	88	8	69	43	2	4	50	1.34
34955100--34955136	16	2.3	16	90	9	58	35	13	24	27	1.93
34959647--34959726	38	2.1	38	97	0	151	42	12	12	32	1.80
34959845--34959881	14	2.7	14	88	12	51	43	5	13	37	1.67
34959969--34960007	20	2.0	20	94	0	69	48	2	0	48	1.15
34963876--34964004	49	2.6	49	76	2	125	35	31	8	24	1.85
34963918--34964022	33	3.2	33	84	0	120	35	32	7	24	1.84
34963879--34964022	66	2.2	66	80	7	159	34	30	9	25	1.87
34969529--34969612	25	3.4	25	84	0	96	23	20	22	33	1.97
34970621--34970756	56	2.4	56	81	4	150	25	22	25	27	2.00
34974731--34974886	27	5.7	27	76	6	136	27	28	16	27	1.97
34974731--34974886	82	1.9	81	82	3	197	27	28	16	27	1.97
34974818--34974900	27	3.1	26	73	16	71	30	25	12	32	1.92
34980245--34980284	20	1.9	22	85	10	57	45	2	5	47	1.38
34980397--34980479	25	3.3	25	83	3	96	24	25	20	30	1.99
34983775--34983918	54	2.6	54	92	3	227	18	24	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34983777--34983918	27	5.2	27	83	9	173	18	23	22	35	1.96
34983777--34983936	27	5.9	27	80	12	168	19	24	21	35	1.96
34983777--34983936	81	2.0	81	82	7	200	19	24	21	35	1.96
34986582--34986613	15	2.0	17	88	11	50	25	0	31	43	1.55
34987525--34987634	56	2.0	56	88	0	166	21	26	28	23	1.99
34990469--34990503	9	3.7	9	85	14	52	65	25	0	8	1.21
34990472--34990506	11	3.4	11	92	7	56	62	25	0	11	1.28
34991612--34991664	25	2.1	25	100	0	106	22	18	3	54	1.59
34994948--34995012	32	2.0	32	96	0	121	40	24	7	27	1.82
34995732--34995777	19	2.5	19	86	10	60	71	0	4	23	1.03
35001850--35001887	20	1.9	20	88	0	58	36	31	13	18	1.89
35005852--35005904	24	2.2	24	83	6	63	41	13	30	15	1.85
35005968--35005996	13	2.1	14	93	6	51	20	10	13	55	1.68
35006374--35006399	10	2.6	10	100	0	52	80	11	7	0	0.89
35010114--35010148	16	2.2	16	89	0	52	37	40	8	14	1.76
35010207--35010266	30	2.0	30	90	0	93	31	26	5	36	1.78
35012507--35012840	170	2.0	172	88	2	503	33	22	14	29	1.93
35012864--35013001	49	2.8	48	78	10	129	23	28	19	28	1.98
35014788--35014820	13	2.6	13	90	4	50	48	12	0	39	1.40
35017752--35017805	6	9.2	6	82	11	51	77	0	1	20	0.86
35017755--35017790	5	6.8	5	90	9	54	80	0	0	19	0.71
35017760--35017806	15	3.3	14	80	14	60	78	0	2	19	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35022954--35022986	13	2.6	13	90	4	50	48	12	0	39	1.40
35024439--35024477	16	2.4	16	82	0	51	53	20	15	10	1.70
35024694--35024783	29	3.1	28	85	7	119	27	13	27	31	1.94
35026111--35026227	46	2.6	45	82	9	130	25	31	14	28	1.95
35027867--35027974	54	2.0	54	100	0	216	33	20	12	33	1.91
35040958--35040983	3	8.7	3	100	0	52	34	0	0	65	0.93
35043212--35043250	20	2.0	20	90	5	62	43	0	0	56	0.99
35043219--35043268	25	2.0	25	84	7	66	52	0	0	48	1.00
35043929--35044034	55	1.9	55	100	0	212	28	16	7	47	1.74
35045611--35045681	23	3.1	23	79	4	81	26	29	16	26	1.97
35050811--35050840	10	2.9	10	95	5	51	70	10	0	20	1.16
35050978--35051025	24	2.0	24	95	0	87	37	18	8	35	1.81
35051928--35051976	11	4.1	11	80	17	53	59	2	0	38	1.09
35051928--35051983	12	4.4	13	76	17	55	58	1	0	39	1.08
35051929--35051987	25	2.3	26	88	5	84	59	1	0	38	1.08
35053478--35053610	47	2.8	47	81	9	164	26	21	30	21	1.98
35060959--35061229	47	5.8	46	76	11	191	28	18	29	23	1.98
35061056--35061217	46	3.5	44	80	9	180	28	16	30	24	1.97
35060962--35061217	140	1.8	140	83	6	340	28	17	29	23	1.97
35062297--35062344	21	2.3	21	77	0	60	16	29	25	29	1.97
35067273--35067336	31	2.1	31	90	0	101	21	23	15	39	1.92
35067551--35067669	23	5.1	23	90	1	184	27	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35067720--35067786	20	3.3	20	93	0	116	32	20	11	34	1.90
35067720--35067775	11	5.5	11	71	16	57	32	19	12	35	1.89
35067823--35067870	25	1.9	25	82	0	60	25	12	22	39	1.89
35069029--35069096	27	2.5	27	90	4	102	22	25	19	33	1.97
35069125--35069363	27	8.8	27	77	5	185	32	9	19	38	1.84
35069238--35069377	54	2.6	54	87	4	210	30	7	22	39	1.82
35069208--35069362	81	1.9	81	85	5	215	30	9	20	40	1.83
35069354--35069488	27	5.0	27	85	3	148	42	5	20	31	1.75
35069238--35069444	54	3.8	54	80	3	175	36	7	19	37	1.79
35069445--35069525	37	2.2	38	84	2	101	41	7	28	22	1.80
35069483--35069546	27	2.4	26	84	5	83	39	6	29	25	1.80
35069428--35069549	64	1.9	64	87	0	181	38	6	27	27	1.81
35069490--35069549	27	2.2	27	90	0	93	36	5	31	26	1.78
35069555--35069644	27	3.3	27	85	3	119	32	11	16	40	1.84
35069538--35069644	54	2.0	54	81	7	128	30	11	19	38	1.87
35069555--35069659	27	3.9	27	78	9	90	34	10	16	39	1.83
35072247--35072325	28	2.9	28	88	1	124	22	15	35	26	1.94
35072625--35072884	27	9.7	27	77	9	230	38	19	11	31	1.87
35072634--35072884	54	4.7	53	84	4	306	37	19	11	31	1.87
35072624--35072857	80	2.9	81	84	4	276	38	19	11	31	1.87
35072625--35072883	81	3.2	82	84	4	305	38	19	11	30	1.87
35072849--35072927	27	2.9	27	86	0	77	37	18	16	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35074416--35074583	46	3.7	46	76	8	139	29	16	29	24	1.96
35074414--35074738	146	2.3	140	80	7	345	28	16	29	25	1.97
35076198--35077758	545	2.9	543	94	0	2777	37	7	19	36	1.80
35080386--35080507	43	2.9	42	79	16	151	28	24	16	30	1.96
35086687--35086763	38	2.0	38	97	0	145	42	12	9	35	1.75
35087686--35087720	16	2.2	16	100	0	70	34	14	31	20	1.92
35088075--35088429	44	7.6	45	75	12	154	27	20	28	23	1.99
35088075--35088286	46	4.5	48	78	5	202	30	20	27	21	1.98
35088114--35088286	94	1.8	94	90	2	276	30	20	28	20	1.98
35088263--35088376	44	2.6	44	98	0	219	19	20	30	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295