genome.fa.s2.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  158  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53745449--53745906	47	9.7	47	93	2	717	28	29	9	32	1.88
53745498--53745623	25	5.3	25	58	11	66	30	29	7	32	1.86
53745459--53745927	234	2.0	230	86	6	651	30	28	8	32	1.88
53749021--53749065	22	2.1	22	87	4	65	31	33	8	26	1.87
53749262--53749421	38	4.1	39	82	11	170	26	27	21	24	1.99
53749725--53749802	28	2.7	29	82	9	97	28	33	14	24	1.94
53749784--53749884	42	2.4	42	96	3	186	25	35	15	22	1.94
53751746--53751875	62	2.0	67	86	8	189	29	34	16	20	1.94
53751809--53751882	37	2.0	37	97	2	141	25	35	18	20	1.96
53752044--53752450	47	8.7	47	94	3	698	29	28	8	33	1.87
53752163--53752235	22	3.3	22	64	7	58	28	27	10	32	1.91
53752044--53752450	138	2.9	140	93	4	687	29	28	8	33	1.87
53752044--53752450	185	2.2	187	93	3	696	29	28	8	33	1.87
53763344--53763759	47	8.7	47	93	2	663	32	8	29	29	1.86
53763878--53763955	36	2.1	37	90	2	122	24	19	30	25	1.98
53769051--53769220	46	3.7	46	76	16	192	22	21	27	29	1.99
53776082--53776254	46	3.7	46	77	13	201	22	20	27	28	1.99
53776079--53776249	93	1.8	93	94	0	306	22	21	28	28	1.99
53782701--53782742	17	2.4	18	96	4	77	57	4	14	23	1.56
53784101--53784147	25	1.9	24	82	4	58	53	8	4	34	1.51
53786965--53787024	24	2.5	24	84	10	77	13	5	0	81	0.84
53786959--53787015	13	4.4	14	72	17	50	15	5	0	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53786965--53787049	24	3.4	23	81	12	71	15	7	1	76	1.06
53791833--53791884	19	2.9	18	81	10	63	44	15	17	23	1.86
53798515--53798579	32	2.0	32	90	0	103	12	20	18	49	1.79
53803040--53803154	23	5.0	23	73	7	90	24	20	18	37	1.94
53803703--53803787	36	2.4	36	100	0	170	20	8	21	50	1.73
53806286--53806517	40	5.8	40	95	1	387	22	23	28	25	2.00
53814389--53814605	40	5.5	40	90	2	298	23	23	29	24	1.99
53822771--53822940	46	3.7	46	82	6	229	21	21	28	29	1.98
53822816--53822885	20	3.3	20	65	27	54	21	20	30	28	1.98
53822771--53822935	90	1.8	90	96	0	303	20	21	29	29	1.98
53828406--53828615	40	5.3	39	86	5	228	28	27	20	23	1.99
53828397--53828614	79	2.7	79	79	7	219	28	27	20	23	1.99
53846009--53846401	129	3.0	130	88	1	563	33	16	19	30	1.94
53848979--53850157	132	8.9	132	91	0	1856	27	24	19	29	1.98
53849647--53850147	45	11.4	43	64	9	125	27	23	19	28	1.99
53849813--53850145	45	7.5	45	66	10	166	27	25	18	28	1.98
53853098--53853303	27	7.6	27	91	0	322	40	19	7	32	1.80
53853261--53854096	27	31.3	27	81	7	929	35	19	19	25	1.95
53853351--53853389	18	2.2	18	95	0	69	33	20	23	23	1.97
53853324--53853515	45	4.1	45	81	15	235	33	20	21	23	1.97
53853396--53853434	18	2.2	18	95	0	69	33	20	23	23	1.97
53853640--53853714	37	2.0	37	89	0	114	40	16	21	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53854424--53854482	22	2.7	22	81	5	66	20	27	22	30	1.98
53854649--53854706	27	2.1	27	84	6	73	18	24	22	34	1.96
53854849--53854942	6	15.3	6	77	16	95	19	17	14	48	1.81
53854849--53854933	37	2.3	37	89	0	125	18	17	14	49	1.80
53873524--53873678	9	17.2	9	86	0	211	30	0	22	45	1.57
53873947--53874014	29	2.3	28	85	9	91	54	0	0	45	0.99
53873982--53874115	39	3.0	47	80	16	194	52	4	0	43	1.21
53874057--53874120	19	3.3	19	72	20	69	53	6	0	40	1.26
53874336--53874382	24	2.0	24	95	0	85	42	8	21	27	1.81
53875385--53875503	59	2.0	59	100	0	238	45	8	13	32	1.73
53876704--53876781	39	2.0	38	90	2	120	42	3	14	39	1.63
53878018--53878163	75	1.9	74	82	5	177	33	14	18	33	1.91
53877954--53878351	188	2.1	184	80	9	414	30	15	18	34	1.92
53878459--53878511	28	1.9	27	81	11	63	33	5	3	56	1.41
53878766--53878821	21	2.6	21	88	2	76	21	0	26	51	1.48
53878787--53878827	21	2.0	21	90	0	64	26	0	24	48	1.51
53878871--53878926	29	1.9	29	82	7	69	21	5	26	46	1.73
53879230--53879256	10	2.7	10	100	0	54	29	0	11	59	1.32
53879552--53879983	153	2.8	150	84	7	559	27	20	19	31	1.97
53880831--53880859	14	2.0	15	93	6	51	27	0	20	51	1.47
53893687--53893732	22	2.1	22	88	4	67	21	2	0	76	0.90
53893789--53893833	23	1.9	24	86	4	65	17	6	0	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53893814--53893852	10	3.7	11	86	10	55	12	10	0	76	1.01
53893783--53893852	21	3.2	22	81	15	74	17	7	0	75	1.01
53893893--53893972	19	4.2	19	72	13	58	16	2	3	77	1.02
53903202--53903298	27	3.6	27	80	5	97	15	20	20	43	1.88
53903280--53903334	22	2.5	22	84	0	74	18	18	23	40	1.91
53905038--53905150	31	3.7	30	84	5	131	25	23	18	31	1.97
53905174--53905265	42	2.2	42	92	0	148	34	21	14	29	1.93
53905410--53905533	26	4.8	26	90	1	187	27	22	22	27	1.99
53906336--53906419	27	3.1	27	89	3	125	20	26	21	32	1.98
53906481--53906737	27	9.4	27	80	3	156	35	10	18	35	1.84
53906478--53906683	54	3.8	54	78	3	216	33	10	17	38	1.84
53906635--53906842	54	3.9	54	82	1	177	40	9	21	28	1.83
53906635--53906842	81	2.6	81	81	2	213	40	9	21	28	1.83
53906661--53906842	27	6.8	27	87	4	226	41	8	21	27	1.83
53906661--53906900	81	3.0	81	79	4	214	39	9	21	29	1.84
53906489--53906941	27	16.7	27	79	6	153	35	9	19	35	1.84
53909181--53909355	46	3.8	46	76	11	187	30	27	19	22	1.98
53909186--53909356	93	1.8	93	89	2	272	30	28	19	21	1.97
53909779--53909838	30	2.0	30	86	0	84	30	25	6	38	1.81
53911092--53911263	46	3.7	46	79	4	202	29	20	27	22	1.98
53917716--53917760	20	2.2	20	100	0	90	37	13	15	33	1.86
53918380--53918455	30	2.6	30	80	2	100	28	10	26	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53918799--53919020	46	4.8	46	75	9	193	27	20	29	22	1.99
53928747--53928799	27	2.0	27	84	0	70	22	20	22	33	1.97
53939074--53939133	27	2.3	26	82	2	66	35	18	23	23	1.96
53941145--53941221	40	1.9	40	84	5	102	38	22	3	35	1.72
53942541--53942712	93	1.8	93	92	0	290	27	28	22	21	1.99
53942533--53942708	46	3.8	46	79	10	205	28	27	22	21	1.99
53942584--53942727	46	3.1	46	71	18	136	29	27	20	22	1.98
53955436--53955829	50	7.8	50	80	4	398	31	25	17	25	1.97
53957666--53957732	24	2.8	24	86	2	89	22	23	10	43	1.84
53959147--53959241	42	2.3	42	90	0	145	16	34	23	25	1.95
53960274--53960487	46	4.6	46	75	11	152	24	28	19	27	1.98
53960824--53960881	30	1.9	30	82	6	73	34	17	12	36	1.87
53965831--53965972	40	3.6	40	93	2	234	23	23	27	25	2.00
53969394--53969499	52	2.0	52	96	0	194	44	21	4	29	1.73
53977309--53977366	30	1.9	30	92	0	98	34	18	20	25	1.96
53987501--53987530	15	2.0	15	93	0	51	50	13	23	13	1.77
53994096--53994214	56	2.1	56	96	1	222	44	9	23	22	1.81
53995345--53995568	40	5.6	39	82	5	236	25	21	27	25	1.99
53995398--53995568	79	2.2	79	87	2	236	26	21	26	25	1.99
53995401--53995568	39	4.2	40	88	3	225	26	20	26	26	1.99
53995440--53995601	79	2.1	79	82	6	195	27	19	26	26	1.99
54000224--54000324	39	2.6	39	87	6	136	25	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54080422--54080593	93	1.8	93	91	0	281	27	27	21	23	1.99
54080418--54080590	46	3.7	46	78	10	190	28	26	21	23	1.99
54085426--54085519	49	1.9	49	84	4	127	30	14	27	26	1.95
54089674--54089740	31	2.2	31	88	0	98	28	11	34	25	1.91
54092293--54092647	49	7.5	49	76	13	298	28	18	29	23	1.98
54094039--54094294	46	5.5	48	76	16	186	25	30	17	26	1.97
54094009--54094302	94	3.2	92	76	13	255	25	30	17	26	1.97
54094172--54094299	47	2.8	46	80	13	138	25	30	18	25	1.98
54098780--54099047	47	5.7	47	76	12	237	29	21	27	21	1.99
54098780--54099047	93	2.8	93	83	11	332	29	21	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295