genome.fa.s2.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  200  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68353275--68353307	16	2.1	16	88	5	50	30	0	0	69	0.88
68369909--68369969	30	2.0	30	83	0	77	31	22	8	37	1.84
68371208--68371344	67	2.0	67	94	0	238	37	13	24	24	1.91
68388077--68388150	29	2.6	29	86	4	96	27	16	31	25	1.96
68391497--68391543	20	2.3	20	88	0	67	51	2	10	36	1.49
68394421--68394493	37	2.0	37	97	0	137	30	26	17	26	1.98
68395148--68395214	33	2.0	34	83	13	86	55	8	8	26	1.61
68397485--68397509	13	1.9	13	100	0	50	56	8	4	32	1.47
68400177--68400209	16	2.1	16	100	0	66	24	0	12	63	1.28
68400894--68400969	37	2.1	37	100	0	152	40	13	19	26	1.88
68401406--68401485	24	3.3	23	74	6	70	16	25	22	36	1.94
68402192--68402242	25	2.0	25	100	0	102	39	7	11	41	1.71
68406647--68406773	43	3.0	42	73	5	121	37	25	11	26	1.89
68412654--68412721	24	2.8	25	77	2	66	19	26	22	32	1.97
68414773--68414816	18	2.4	19	80	3	54	45	11	20	22	1.83
68414796--68414906	45	2.5	45	86	2	152	40	17	18	23	1.91
68415833--68415927	3	32.7	3	69	14	56	56	6	0	36	1.25
68415831--68415922	23	4.0	23	70	9	71	55	6	0	38	1.26
68415836--68415927	20	4.7	20	71	15	52	56	6	0	36	1.25
68421942--68421985	18	2.4	19	80	3	54	45	11	20	22	1.83
68422289--68422368	40	2.0	40	87	0	115	38	16	10	35	1.82
68422745--68422782	19	2.0	20	89	5	60	50	5	0	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68423006--68423030	3	8.3	3	100	0	50	64	0	0	36	0.94
68423004--68423054	26	2.0	26	84	0	66	54	3	1	39	1.30
68423066--68423103	20	1.9	20	84	10	51	52	5	2	39	1.38
68424769--68424880	23	4.9	23	75	11	104	35	15	19	29	1.92
68425100--68425264	58	2.9	58	88	2	235	24	21	15	39	1.91
68427461--68427500	20	2.0	21	85	14	57	50	7	7	35	1.59
68427895--68427919	13	1.9	13	100	0	50	40	0	0	60	0.97
68427930--68427977	16	2.9	16	84	3	60	47	6	0	45	1.27
68431382--68431528	55	2.7	54	88	3	208	51	15	8	24	1.72
68434255--68434293	20	2.0	20	90	10	62	15	28	15	41	1.87
68441701--68441752	25	2.1	25	92	0	86	67	5	5	21	1.33
68443658--68443737	20	4.0	20	86	3	108	7	23	23	45	1.78
68443658--68443737	40	2.0	40	90	4	126	7	23	23	45	1.78
68449167--68449257	43	2.1	43	91	0	146	37	21	14	26	1.92
68451989--68452370	48	7.9	48	78	4	333	28	17	27	26	1.97
68451989--68452366	96	3.9	95	86	3	479	28	16	27	26	1.97
68451990--68452365	144	2.6	143	82	5	427	28	17	27	26	1.97
68469804--68469855	26	2.0	26	100	0	104	34	11	23	30	1.90
68470073--68470117	22	2.0	22	100	0	90	31	8	26	33	1.87
68474728--68474752	13	1.9	13	100	0	50	52	0	0	48	1.00
68477657--68477706	10	5.0	10	81	13	59	22	8	2	68	1.26
68478427--68478460	17	1.9	18	88	5	52	29	11	2	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68496150--68496186	17	2.1	17	90	5	56	56	10	0	32	1.34
68499844--68499875	16	1.9	17	93	6	57	62	3	34	0	1.11
68499864--68499906	21	2.0	21	95	0	77	48	2	23	25	1.62
68501880--68501920	21	2.0	21	90	0	64	51	4	19	24	1.66
68505095--68505152	20	2.9	19	76	18	64	37	20	31	10	1.86
68505096--68505163	20	3.4	19	73	13	57	38	20	30	10	1.86
68508698--68508752	29	1.9	28	92	3	92	12	23	30	32	1.92
68525705--68525764	29	2.1	27	87	6	84	23	38	1	36	1.65
68525705--68525764	9	6.4	9	77	11	59	23	38	1	36	1.65
68534674--68534737	31	2.1	31	83	11	80	35	1	3	59	1.23
68553656--68553918	40	6.6	40	87	3	316	24	20	28	26	1.99
68553695--68553953	80	3.3	80	84	3	238	25	20	28	25	1.99
68560994--68561137	42	3.5	41	78	15	147	23	19	29	27	1.98
68580689--68580739	1	51.0	1	80	0	57	7	1	0	90	0.53
68586822--68586989	40	4.2	40	83	4	106	25	27	23	23	2.00
68586845--68586989	40	3.6	40	85	4	193	23	26	24	25	2.00
68594849--68595016	40	4.2	40	83	4	106	25	27	23	23	2.00
68594872--68595016	40	3.6	40	85	4	193	23	26	24	25	2.00
68596205--68596280	38	2.0	38	100	0	152	31	23	13	31	1.93
68603469--68603879	215	1.9	215	99	0	813	37	10	11	40	1.76
68604094--68604229	51	2.7	51	76	0	137	40	7	11	40	1.70
68605914--68606203	96	3.0	96	91	1	456	35	18	34	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68607110--68607245	51	2.7	51	77	0	155	39	6	12	41	1.69
68611432--68611481	19	2.5	19	83	6	55	60	10	10	20	1.57
68615683--68615777	40	2.4	40	87	3	138	29	14	25	30	1.95
68619019--68619200	101	1.8	101	85	0	256	26	20	23	29	1.99
68618867--68619242	50	7.5	50	73	4	299	26	17	25	30	1.97
68618866--68619260	151	2.6	151	87	0	565	27	18	24	30	1.98
68621768--68621927	82	2.0	82	92	0	266	41	8	21	28	1.83
68626596--68626655	28	2.1	29	81	3	68	43	3	23	30	1.70
68626610--68626668	29	2.1	28	81	9	66	49	0	22	28	1.50
68631398--68631517	43	2.8	42	75	2	123	30	19	24	25	1.98
68631366--68631478	43	2.7	42	80	1	127	30	15	24	28	1.96
68633994--68634190	106	1.9	105	84	8	265	50	11	6	31	1.63
68634649--68634687	20	2.0	19	90	5	60	64	0	5	30	1.15
68634677--68634712	19	1.9	19	88	5	56	47	5	2	44	1.41
68634660--68634753	16	5.6	16	69	16	57	58	2	3	36	1.26
68634720--68634771	27	2.0	26	92	3	86	63	0	0	36	0.95
68636911--68637041	47	2.8	47	82	4	140	30	26	14	28	1.95
68637045--68637073	7	4.1	7	100	0	58	13	27	13	44	1.82
68637072--68637280	31	6.7	31	91	0	301	25	26	19	28	1.99
68637258--68637434	50	3.5	50	88	2	257	26	21	16	35	1.94
68639421--68639460	21	2.0	21	90	5	64	40	10	22	27	1.86
68639642--68640141	44	11.2	44	73	5	335	26	27	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68639649--68640220	134	4.3	136	78	5	585	26	26	14	32	1.95
68639664--68640222	267	2.1	268	82	6	677	26	26	14	32	1.95
68651659--68651855	106	1.9	105	82	6	254	49	11	6	31	1.65
68651963--68652007	22	2.0	23	82	4	56	68	4	2	24	1.19
68652307--68652345	20	2.0	19	90	5	60	64	0	5	30	1.15
68652341--68652383	19	2.3	19	84	8	52	55	4	4	34	1.41
68652378--68652429	27	2.0	26	92	3	86	63	0	0	36	0.95
68661352--68661538	4	46.8	4	81	0	140	41	5	8	44	1.58
68661352--68661475	10	12.2	10	85	3	131	37	0	12	49	1.46
68661450--68661535	10	8.6	10	85	0	100	48	12	1	37	1.49
68661463--68661533	18	3.9	18	83	0	88	50	15	0	33	1.44
68663014--68663038	9	2.8	9	100	0	50	24	12	0	64	1.27
68665334--68665423	44	2.0	45	93	2	155	34	20	10	35	1.86
68674416--68674495	25	3.2	25	89	0	124	41	13	7	37	1.73
68677574--68678240	331	2.0	331	99	0	1316	29	22	14	33	1.94
68679415--68679483	12	5.6	12	74	6	57	37	17	4	40	1.69
68679411--68679490	25	3.2	25	87	0	115	40	15	6	38	1.72
68681454--68681514	30	2.0	30	93	0	104	27	18	16	37	1.92
68696614--68696676	31	2.0	31	96	0	117	42	9	23	23	1.83
68706483--68706580	43	2.3	43	85	3	126	33	23	14	28	1.94
68707505--68708084	287	2.0	287	97	0	1106	38	17	9	34	1.82
68715339--68715460	44	2.8	44	78	12	121	26	17	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68718614--68718895	18	15.3	18	71	9	147	36	14	12	36	1.83
68718614--68718895	36	7.6	36	71	11	176	36	14	12	36	1.83
68719000--68719024	6	4.2	6	100	0	50	52	16	16	16	1.76
68719112--68719136	12	2.1	12	100	0	50	40	20	24	16	1.91
68719069--68719269	45	4.3	45	86	7	267	40	21	19	18	1.92
68719094--68719269	90	1.9	93	91	6	295	39	22	20	17	1.92
68719846--68719902	25	2.2	26	78	9	64	31	10	1	56	1.44
68720060--68720120	21	2.9	21	79	13	63	47	18	0	34	1.49
68740994--68741026	14	2.3	15	89	5	50	42	0	33	24	1.55
68742462--68742620	27	5.9	27	81	11	175	35	22	23	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295