genome.fa.s2.2.7.7.80.10.50.1000.270.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  270  of  295  ( 35319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92293201--92293290	44	2.0	44	95	0	162	20	21	26	32	1.97
92293201--92293296	23	4.3	23	88	6	153	20	19	27	32	1.97
92300285--92300323	18	2.2	17	86	13	53	33	0	20	46	1.51
92300549--92300646	23	4.3	23	90	2	162	20	21	26	31	1.98
92300551--92300639	45	2.0	45	95	0	160	19	22	26	31	1.97
92303927--92304092	72	2.3	71	88	4	244	22	15	20	41	1.89
92304025--92304652	140	4.5	140	96	1	1159	25	16	20	37	1.93
92304490--92304523	13	2.5	13	90	4	50	20	11	8	58	1.59
92304680--92304775	49	2.0	49	97	0	183	30	16	20	32	1.95
92304908--92305029	57	2.2	56	88	5	176	27	12	18	41	1.86
92304998--92305059	30	2.1	30	90	6	99	19	9	29	41	1.83
92306687--92306729	15	2.9	15	82	10	61	37	0	6	55	1.27
92306690--92306726	13	2.6	15	87	8	51	37	0	5	56	1.22
92308342--92308383	14	3.1	14	86	3	50	14	9	4	71	1.28
92308968--92309063	49	2.0	49	97	0	183	30	44	2	22	1.64
92322747--92322786	20	2.0	20	95	0	71	35	5	32	27	1.79
92326287--92326337	27	1.9	27	88	4	77	52	1	1	43	1.23
92326281--92326340	26	2.3	27	82	5	79	56	1	1	40	1.19
92331953--92332119	52	3.1	53	73	16	164	47	5	16	30	1.70
92331955--92332069	58	2.0	58	86	6	162	47	5	15	31	1.67
92331953--92332082	57	2.4	55	75	18	144	47	4	17	30	1.68
92341540--92341607	30	2.3	30	85	5	86	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92347822--92347859	2	19.0	2	94	0	67	47	50	2	0	1.15
92348077--92348208	39	3.4	39	89	0	201	21	27	20	30	1.98
92349550--92349601	25	2.1	25	100	0	104	36	11	11	40	1.78
92355763--92355804	2	21.0	2	100	0	84	50	50	0	0	1.00
92356020--92356151	39	3.4	39	86	0	183	22	26	19	31	1.98
92364668--92364699	10	3.4	10	87	12	50	59	0	0	40	0.97
92368468--92368505	18	2.1	18	95	0	67	13	42	21	23	1.88
92370333--92370391	26	2.3	25	80	8	64	10	10	3	76	1.13
92377323--92377360	16	2.4	16	86	8	51	23	0	2	73	0.95
92378135--92378197	33	1.9	33	90	0	99	20	22	25	31	1.98
92389196--92389243	26	2.0	22	84	15	60	41	10	10	37	1.74
92390356--92390393	20	1.9	20	88	0	58	60	5	5	28	1.40
92390384--92390425	21	2.0	20	82	13	50	71	0	0	28	0.86
92390389--92390449	25	2.4	25	81	5	61	62	1	0	36	1.05
92391089--92391124	5	6.8	5	87	12	54	80	0	0	19	0.71
92391089--92391124	11	3.4	10	88	11	54	80	0	0	19	0.71
92391679--92391711	16	2.1	16	94	0	57	57	3	0	39	1.14
92394133--92394161	6	4.8	6	100	0	58	86	0	0	13	0.58
92398608--92398664	22	2.5	22	78	18	64	22	7	5	64	1.38
92398613--92398663	21	2.5	20	78	9	57	25	7	3	62	1.40
92411005--92411577	44	13.3	44	72	11	402	27	16	25	31	1.96
92411022--92411601	87	6.8	89	78	9	555	28	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92411022--92411588	131	4.4	132	83	6	646	28	15	25	30	1.96
92413151--92413206	21	2.5	22	77	13	62	23	7	5	64	1.40
92413158--92413205	20	2.4	19	83	13	53	25	8	4	62	1.41
92413491--92413585	37	2.6	37	78	13	97	37	13	0	48	1.43
92422385--92422423	21	1.9	20	84	5	51	33	28	12	25	1.93
92424721--92424748	3	9.3	3	100	0	56	67	0	0	32	0.91
92436446--92436582	42	3.3	41	77	5	141	32	15	23	29	1.95
92443841--92443898	29	2.0	29	100	0	116	34	0	24	41	1.55
92445566--92445613	24	2.0	23	92	4	78	75	0	25	0	0.81
92445581--92445607	14	1.9	14	100	0	54	74	0	25	0	0.83
92463102--92463135	18	1.9	18	88	5	52	29	0	5	64	1.17
92473146--92473267	42	2.9	42	78	6	122	16	21	19	42	1.89
92478624--92478685	30	2.2	29	82	8	74	51	0	3	45	1.17
92478790--92478859	35	2.0	34	88	2	104	47	0	5	47	1.26
92478786--92478863	35	2.2	37	80	13	101	46	0	5	48	1.24
92478995--92479042	9	5.6	9	81	18	50	39	0	0	60	0.97
92480013--92480090	33	2.3	34	80	12	90	42	1	19	37	1.59
92483441--92483480	14	2.8	14	92	3	53	45	0	15	40	1.46
92483441--92483471	7	4.4	7	100	0	62	45	0	12	41	1.42
92490049--92490101	27	1.9	28	84	3	72	7	9	5	77	1.12
92492784--92492816	17	2.0	17	94	5	59	36	6	6	51	1.51
92496395--92496462	33	2.1	33	100	0	136	38	27	2	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92498638--92498697	9	6.3	9	75	17	50	68	1	3	26	1.15
92498802--92498847	18	2.6	18	80	13	58	32	4	0	63	1.14
92498815--92498860	17	2.6	17	86	10	58	23	6	0	69	1.11
92498815--92498860	18	2.6	18	83	13	60	23	6	0	69	1.11
92498865--92498912	10	4.9	10	76	5	53	50	0	0	50	1.00
92499719--92499766	15	3.1	15	82	11	53	64	0	2	33	1.05
92508665--92508699	18	1.9	18	100	0	70	17	11	5	65	1.43
92512850--92512903	21	2.6	20	80	13	56	46	18	20	14	1.84
92513528--92513563	17	2.1	18	89	5	56	63	5	5	25	1.38
92518865--92518905	2	20.5	2	100	0	82	0	0	48	51	1.00
92519599--92519645	23	2.0	23	95	0	85	51	4	19	25	1.65
92519902--92519933	17	1.9	16	93	6	55	15	12	40	31	1.85
92522718--92522777	31	1.9	31	86	6	86	40	13	5	41	1.66
92531526--92531559	7	4.9	7	85	0	50	0	70	5	23	1.09
92531518--92531565	21	2.3	20	80	13	53	0	72	4	22	1.01
92532472--92532517	24	2.0	23	82	4	56	47	13	2	36	1.54
92548316--92548440	36	3.2	36	68	16	97	63	9	5	21	1.45
92548326--92548488	80	2.0	82	85	5	224	61	9	8	20	1.53
92548810--92548847	18	2.1	19	90	5	60	34	0	7	57	1.28
92556399--92556484	40	2.2	40	84	0	109	38	19	17	24	1.93
92556535--92556723	40	4.8	40	87	1	263	28	20	23	27	1.99
92556813--92556901	21	4.2	21	77	0	79	17	1	30	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92556874--92556914	21	2.0	21	90	0	64	19	0	36	43	1.51
92557413--92557531	43	2.8	43	76	11	136	24	0	23	51	1.54
92557521--92557566	14	3.3	14	81	0	56	17	0	28	54	1.43
92557734--92557784	20	2.5	20	81	6	59	17	0	37	45	1.49
92557986--92558019	18	1.9	18	88	5	52	50	2	2	44	1.32
92561379--92561489	42	2.6	42	84	1	141	22	16	27	34	1.95
92565911--92565949	21	1.9	20	89	5	60	43	7	0	48	1.31
92566591--92566632	15	2.7	15	79	17	50	61	0	9	28	1.27
92575357--92575403	17	2.7	18	74	12	53	46	0	10	42	1.38
92585334--92585372	17	2.3	17	86	0	51	48	5	0	46	1.24
92586209--92586240	12	2.6	12	95	5	55	3	6	0	90	0.53
92587308--92587389	2	43.5	2	72	16	59	39	2	2	56	1.26
92587326--92587390	11	5.5	11	79	16	60	38	1	3	56	1.24
92587326--92587389	9	7.3	9	76	18	55	39	1	3	56	1.25
92587568--92587623	3	18.0	3	78	14	60	30	5	1	62	1.28
92599992--92600478	44	11.2	44	88	3	729	29	17	31	20	1.96
92599992--92600478	128	3.7	129	90	1	726	29	17	31	20	1.96
92601128--92601154	11	2.5	11	100	0	54	0	14	0	85	0.61
92602182--92602216	12	2.9	12	95	0	61	40	0	8	51	1.33
92602186--92602221	12	3.0	12	91	0	54	36	0	11	52	1.37
92602181--92602221	16	2.6	16	92	0	64	39	0	9	51	1.35
92602280--92602357	16	5.3	15	79	11	74	37	1	2	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92602271--92602349	23	3.4	23	72	18	74	35	1	5	58	1.28
92604920--92604950	15	2.1	14	94	5	53	74	9	0	16	1.07
92612823--92612848	11	2.4	11	100	0	52	92	0	0	7	0.39
92615908--92615949	22	1.9	22	90	0	66	33	2	4	59	1.31
92620293--92620329	6	6.0	6	93	3	56	35	16	16	32	1.91
92621172--92621217	22	2.1	22	84	15	60	32	23	0	43	1.54
92625760--92625880	55	2.2	55	87	0	170	27	21	28	23	1.99
92627459--92627508	3	17.3	3	85	8	68	68	2	30	0	1.01
92627433--92627523	11	8.5	10	73	15	51	70	1	27	1	1.01
92627433--92627472	22	1.9	20	90	10	62	70	0	27	2	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295