Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Length:  100057689

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   

This is table  138  of  295  ( 35319 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47094861--47094885
3
8.3
3
100
0
50
68
0
0
32
0.90
47098460--47098510
26
2.0
26
96
0
93
17
11
23
47
1.81
47102823--47104525
120
14.2
120
99
0
3298
44
2
5
47
1.41
47104114--47104148
18
2.0
17
88
5
52
45
0
0
54
0.99
47104354--47104388
18
2.0
17
94
5
61
42
0
0
57
0.99
47104744--47104812
16
4.2
16
90
3
111
37
36
1
24
1.65
47104744--47104812
33
2.1
32
91
2
111
37
36
1
24
1.65
47108760--47108847
39
2.3
38
90
4
131
29
25
21
23
1.99
47116225--47116260
16
2.2
17
90
5
56
27
2
0
69
1.02
47117165--47117363
45
4.4
45
89
1
256
40
17
19
23
1.91
47117142--47117380
90
2.7
90
80
2
257
40
18
18
22
1.91
47117298--47117454
45
3.5
45
77
10
149
45
12
21
20
1.84
47117342--47117454
46
2.5
45
83
1
145
46
10
22
21
1.82
47118585--47118614
8
3.6
8
95
4
51
13
0
36
50
1.42
47125597--47125718
42
2.9
42
73
4
102
32
19
21
26
1.97
47127074--47127169
34
2.9
34
78
10
108
28
21
21
28
1.99
47127192--47127234
22
1.9
23
90
4
70
23
53
2
20
1.57
47135809--47135911
44
2.3
45
84
3
127
30
21
13
34
1.92
47135831--47135916
46
1.9
44
90
4
136
29
24
13
32
1.94
47139736--47139778
18
2.4
18
77
14
54
53
0
6
39
1.28
47141058--47141104
21
2.2
21
100
0
94
29
0
12
57
1.36
47143052--47143097
22
2.0
22
83
8
56
39
15
4
41
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47143182--47143219
20
1.9
20
94
0
67
71
0
2
26
1.00
47143184--47143228
20
2.2
20
84
4
54
68
2
4
24
1.19
47146335--47146477
41
3.5
41
81
0
142
19
16
26
37
1.92
47146404--47146435
16
2.1
15
94
5
55
12
12
31
43
1.80
47148861--47149021
44
3.7
43
76
12
125
22
18
26
32
1.97
47155621--47155842
94
2.3
93
81
6
241
27
18
31
22
1.97
47155618--47155833
46
4.6
47
75
14
178
28
17
31
23
1.97
47158797--47158856
28
2.1
28
87
6
86
5
28
0
66
1.12
47158816--47158868
19
2.7
19
82
2
52
3
28
0
67
1.07
47158799--47158871
11
7.4
10
71
22
57
4
30
0
65
1.11
47163525--47163553
12
2.4
12
100
0
58
24
0
34
41
1.55
47163809--47163878
30
2.4
29
81
13
81
60
1
1
37
1.15
47163836--47163878
14
3.0
14
75
3
50
62
2
0
34
1.08
47169264--47169297
17
1.9
18
88
5
52
44
0
0
55
0.99
47169517--47169568
7
7.6
7
86
4
79
32
1
0
65
1.04
47170060--47170182
58
2.1
58
81
0
138
51
12
13
22
1.75
47175705--47175786
41
2.0
41
88
4
121
41
10
14
32
1.81
47176789--47176832
22
2.0
22
100
0
88
36
13
4
45
1.64
47178079--47178129
12
4.1
13
75
10
52
60
0
1
37
1.08
47178079--47178125
24
1.9
25
86
4
69
61
0
2
36
1.08
47189959--47190104
43
3.4
42
81
5
159
31
29
16
22
1.96
47191022--47191074
22
2.4
22
87
6
72
45
22
3
28
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47194208--47194250
14
3.1
14
93
0
77
39
0
37
23
1.55
47194316--47194345
14
2.1
14
93
0
51
13
3
40
43
1.60
47195357--47195400
21
2.0
23
91
8
74
36
40
4
18
1.71
47195662--47195770
41
2.7
41
89
2
166
19
18
24
37
1.94
47195662--47195800
41
3.4
40
84
5
152
18
18
24
38
1.93
47196071--47196123
22
2.3
23
87
6
72
64
5
1
28
1.27
47196563--47196611
20
2.5
20
89
0
71
59
6
6
28
1.46
47199472--47199541
30
2.3
30
97
0
131
17
34
32
15
1.91
47202432--47202467
18
2.1
18
89
5
56
33
25
0
41
1.55
47203079--47203127
26
1.9
25
84
12
64
61
2
0
36
1.08
47203075--47203123
12
3.8
13
78
21
59
61
2
0
36
1.08
47203648--47203712
30
2.3
27
81
7
76
44
1
1
52
1.19
47204548--47204600
6
8.3
6
82
12
52
77
3
5
13
1.09
47204568--47204601
18
1.9
17
94
5
59
76
0
8
14
1.01
47206237--47206284
13
3.9
12
81
10
53
72
0
6
20
1.05
47206244--47206332
33
2.8
32
80
12
89
74
0
7
17
1.05
47210106--47210415
155
2.0
155
96
0
575
28
20
10
40
1.86
47217196--47217459
46
5.7
46
77
11
211
26
20
29
23
1.99
47222748--47222802
20
2.7
20
83
13
60
70
0
0
29
0.87
47223858--47223918
30
2.0
30
84
6
79
16
31
26
26
1.96
47225761--47225797
19
1.9
19
94
0
65
56
10
5
27
1.55
47226651--47226692
22
2.0
21
90
4
66
23
28
38
9
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47233306--47233335
15
2.0
15
93
0
51
70
6
13
10
1.34
47235501--47235571
34
2.1
34
82
7
83
42
11
29
16
1.83
47239160--47239196
16
2.3
16
86
13
58
40
0
0
59
0.97
47239206--47239264
22
2.8
20
78
9
55
49
1
0
49
1.11
47244663--47244696
17
2.1
16
88
5
50
61
0
0
38
0.96
47245217--47245301
31
2.7
31
82
13
95
34
3
0
62
1.12
47245226--47245301
39
2.0
37
82
10
91
34
2
0
63
1.09
47245328--47245375
16
2.9
17
75
9
55
66
2
0
31
1.03
47247719--47247748
3
10.0
3
100
0
60
66
0
0
33
0.92
47259485--47259527
17
2.5
17
88
0
59
74
4
9
11
1.20
47260404--47260445
13
3.1
13
86
10
57
71
4
21
2
1.16
47260404--47260460
13
3.9
15
80
17
50
70
5
21
3
1.22
47260508--47260548
19
2.1
20
90
4
66
70
2
24
2
1.11
47265420--47265502
42
2.0
42
100
0
166
33
18
16
31
1.93
47266519--47266563
11
3.9
11
80
11
54
35
0
2
62
1.08
47268706--47268777
21
3.2
21
66
27
58
36
11
26
26
1.90
47268700--47269009
46
6.7
46
92
0
451
39
14
23
22
1.90
47271163--47271217
21
2.7
21
94
2
94
34
0
23
41
1.55
47271324--47271371
11
4.2
11
79
10
51
62
2
0
35
1.07
47282084--47282261
27
6.6
27
81
3
187
27
15
27
29
1.96
47282085--47282240
82
1.9
81
85
3
215
27
16
27
28
1.97
47282081--47282261
82
2.2
81
81
2
211
27
16
27
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47282166--47282272
27
3.9
27
81
3
81
27
15
27
29
1.96
47290193--47290370
27
6.6
27
81
3
187
27
15
27
29
1.96
47290194--47290349
82
1.9
81
85
3
215
27
16
27
28
1.97
47290190--47290370
82
2.2
81
81
2
211
27
16
27
29
1.97
47290275--47290381
27
3.9
27
81
3
81
27
15
27
29
1.96
47292679--47292711
17
1.9
17
93
0
57
54
9
9
27
1.62
47293507--47293546
21
2.0
21
85
9
57
62
2
0
35
1.09
47294122--47294175
24
2.3
23
78
12
56
61
1
0
37
1.07
47294228--47294278
24
2.2
23
82
10
59
3
17
1
76
1.03
47299170--47299333
82
2.0
82
98
0
319
37
15
21
25
1.92
47303999--47304047
11
4.4
11
77
12
55
42
0
0
57
0.99
47308000--47308107
40
2.7
40
80
8
139
68
3
16
11
1.33
47308624--47308667
22
2.0
22
86
0
61
52
0
0
47
1.00
47308674--47308732
13
4.4
13
76
16
50
45
0
1
52
1.10
47308691--47308727
16
2.3
16
86
13
58
56
0
0
43
0.99
47309684--47309725
20
2.2
20
95
4
77
35
4
19
40
1.72
47310550--47310583
17
1.9
18
88
5
52
14
17
0
67
1.23
47312452--47312491
5
8.0
5
83
10
55
35
5
20
40
1.74
47312452--47312497
15
3.1
15
84
9
60
34
6
17
41
1.75
47319961--47320019
26
2.4
26
80
8
70
23
22
23
30
1.99
47320161--47320206
20
2.3
20
88
0
65
32
6
23
36
1.81
47320172--47320280
20
5.5
19
76
4
92
36
8
17
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47320168--47320293
20
6.3
20
71
14
80
38
7
17
37
1.77
47323425--47323458
15
2.2
16
94
5
61
23
0
0
76
0.79
47324600--47324640
21
2.0
21
85
0
55
26
0
2
70
0.99
47324629--47324664
15
2.4
15
86
13
56
25
5
0
69
1.10
47324685--47324736
25
2.1
25
85
3
70
34
0
1
63
1.06
47324679--47324737
24
2.5
23
78
8
64
35
0
3
61
1.13
47325071--47325125
27
2.1
25
83
12
67
65
1
1
30
1.13
47326508--47326552
19
2.4
19
85
7
56
64
2
4
28
1.25
47326514--47326566
19
2.5
22
76
14
67
60
5
3
30
1.37
47327290--47327316
13
2.1
13
100
0
54
33
7
0
59
1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295